data_8JCY
#
_model_server_result.job_id            001QB3TicyoNy0Qj9-uu0g 
_model_server_result.datetime_utc      '2024-11-04 23:10:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jcy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":2001}' 
#
_entry.id    8JCY 
#
_exptl.entry_id    8JCY 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8JCY 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JCY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 42 2 CYS 50 1_555 A SG CYS 84 2 CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 226 2 CYS 234 1_555 A SG CYS 510 2 CYS 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 A SG CYS 347 2 CYS 355 1_555 A SG CYS 354 2 CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 A SG CYS 392 2 CYS 400 1_555 A SG CYS 399 2 CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 A SG CYS 492 2 CYS 500 1_555 A SG CYS 511 2 CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 A SG CYS 496 2 CYS 504 1_555 A SG CYS 514 2 CYS 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 A SG CYS 517 2 CYS 525 1_555 A SG CYS 529 2 CYS 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf8 A SG CYS 532 2 CYS 540 1_555 A SG CYS 545 2 CYS 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf9 A SG CYS 624 2 CYS 632 1_555 A SG CYS 713 2 CYS 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf10 B SG CYS 66 3 CYS 57 1_555 B SG CYS 108 3 CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf11 B SG CYS 249 3 CYS 240 1_555 B SG CYS 536 3 CYS 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf12 B SG CYS 370 3 CYS 361 1_555 B SG CYS 382 3 CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf13 B SG CYS 421 3 CYS 412 1_555 B SG CYS 428 3 CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf14 B SG CYS 518 3 CYS 509 1_555 B SG CYS 537 3 CYS 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf15 B SG CYS 522 3 CYS 513 1_555 B SG CYS 540 3 CYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf16 B SG CYS 543 3 CYS 534 1_555 B SG CYS 555 3 CYS 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf17 B SG CYS 558 3 CYS 549 1_555 B SG CYS 571 3 CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf18 B SG CYS 650 3 CYS 641 1_555 B SG CYS 739 3 CYS 730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 A ND2 ASN 195 2 ASN 203 1_555 C C1 NAG . 2 NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale2 B ND2 ASN 218 3 ASN 209 1_555 H C1 NAG . 3 NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 312 n n 
C1 O1 NAG sing 313 n n 
C1 O5 NAG sing 314 n n 
C1 H1 NAG sing 315 n n 
C2 C3 NAG sing 316 n n 
C2 N2 NAG sing 317 n n 
C2 H2 NAG sing 318 n n 
C3 C4 NAG sing 319 n n 
C3 O3 NAG sing 320 n n 
C3 H3 NAG sing 321 n n 
C4 C5 NAG sing 322 n n 
C4 O4 NAG sing 323 n n 
C4 H4 NAG sing 324 n n 
C5 C6 NAG sing 325 n n 
C5 O5 NAG sing 326 n n 
C5 H5 NAG sing 327 n n 
C6 O6 NAG sing 328 n n 
C6 H61 NAG sing 329 n n 
C6 H62 NAG sing 330 n n 
C7 C8 NAG sing 331 n n 
C7 N2 NAG sing 332 n n 
C7 O7 NAG doub 333 n n 
C8 H81 NAG sing 334 n n 
C8 H82 NAG sing 335 n n 
C8 H83 NAG sing 336 n n 
N2 HN2 NAG sing 337 n n 
O1 HO1 NAG sing 338 n n 
O3 HO3 NAG sing 339 n n 
O4 HO4 NAG sing 340 n n 
O6 HO6 NAG sing 341 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8JCY 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG 2 1 2001 2001 NAG NAG . 
D 4 Z99 2 1 2002 2101 Z99 LY3 . 
E 5 CLR 2 1 2003 3 CLR CLR . 
F 5 CLR 2 1 2004 5 CLR CLR . 
G 5 CLR 2 1 2005 6 CLR CLR . 
H 3 NAG 3 1 2001 2001 NAG NAG . 
I 4 Z99 3 1 2002 2101 Z99 LY3 . 
J 5 CLR 3 1 2003 1 CLR CLR . 
K 5 CLR 3 1 2004 2 CLR CLR . 
L 5 CLR 3 1 2005 4 CLR CLR . 
M 5 CLR 3 1 2006 7 CLR CLR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . H 3 204.237 160.883 227.33 1 36.72 ? C1 NAG 2001 3 1 
HETATM 2 C C2 NAG . . . H 3 204.874 159.512 227.552 1 36.72 ? C2 NAG 2001 3 1 
HETATM 3 C C3 NAG . . . H 3 206.383 159.591 227.337 1 36.72 ? C3 NAG 2001 3 1 
HETATM 4 C C4 NAG . . . H 3 206.696 160.194 225.974 1 36.72 ? C4 NAG 2001 3 1 
HETATM 5 C C5 NAG . . . H 3 205.983 161.534 225.813 1 36.72 ? C5 NAG 2001 3 1 
HETATM 6 C C6 NAG . . . H 3 206.151 162.131 224.435 1 36.72 ? C6 NAG 2001 3 1 
HETATM 7 C C7 NAG . . . H 3 203.813 157.925 229.1 1 36.72 ? C7 NAG 2001 3 1 
HETATM 8 C C8 NAG . . . H 3 203.27 157.242 227.88 1 36.72 ? C8 NAG 2001 3 1 
HETATM 9 N N2 NAG . . . H 3 204.573 159.004 228.881 1 36.72 ? N2 NAG 2001 3 1 
HETATM 10 O O3 NAG . . . H 3 206.944 158.287 227.433 1 36.72 ? O3 NAG 2001 3 1 
HETATM 11 O O4 NAG . . . H 3 208.098 160.39 225.838 1 36.72 ? O4 NAG 2001 3 1 
HETATM 12 O O5 NAG . . . H 3 204.573 161.365 226.022 1 36.72 ? O5 NAG 2001 3 1 
HETATM 13 O O6 NAG . . . H 3 204.954 162.755 223.99 1 36.72 ? O6 NAG 2001 3 1 
HETATM 14 O O7 NAG . . . H 3 203.575 157.518 230.233 1 36.72 ? O7 NAG 2001 3 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#