data_8JCY # _model_server_result.job_id d6l6SJy_5b15439NnqkdCA _model_server_result.datetime_utc '2024-11-04 23:12:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jcy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":2002}' # _entry.id 8JCY # _exptl.entry_id 8JCY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 353.369 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[(1S,2S)-2-carboxycyclopropyl]-3-(9H-xanthen-9-yl)-D-alanine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JCY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JCY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 42 2 CYS 50 1_555 A SG CYS 84 2 CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 226 2 CYS 234 1_555 A SG CYS 510 2 CYS 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 347 2 CYS 355 1_555 A SG CYS 354 2 CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 392 2 CYS 400 1_555 A SG CYS 399 2 CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 492 2 CYS 500 1_555 A SG CYS 511 2 CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 A SG CYS 496 2 CYS 504 1_555 A SG CYS 514 2 CYS 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 A SG CYS 517 2 CYS 525 1_555 A SG CYS 529 2 CYS 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 A SG CYS 532 2 CYS 540 1_555 A SG CYS 545 2 CYS 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 A SG CYS 624 2 CYS 632 1_555 A SG CYS 713 2 CYS 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 B SG CYS 66 3 CYS 57 1_555 B SG CYS 108 3 CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 B SG CYS 249 3 CYS 240 1_555 B SG CYS 536 3 CYS 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 B SG CYS 370 3 CYS 361 1_555 B SG CYS 382 3 CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 B SG CYS 421 3 CYS 412 1_555 B SG CYS 428 3 CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf14 B SG CYS 518 3 CYS 509 1_555 B SG CYS 537 3 CYS 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf15 B SG CYS 522 3 CYS 513 1_555 B SG CYS 540 3 CYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf16 B SG CYS 543 3 CYS 534 1_555 B SG CYS 555 3 CYS 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf17 B SG CYS 558 3 CYS 549 1_555 B SG CYS 571 3 CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf18 B SG CYS 650 3 CYS 641 1_555 B SG CYS 739 3 CYS 730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 195 2 ASN 203 1_555 C C1 NAG . 2 NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 B ND2 ASN 218 3 ASN 209 1_555 H C1 NAG . 3 NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C20 H19 N O5' _chem_comp.formula_weight 353.369 _chem_comp.id Z99 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(1S,2S)-2-carboxycyclopropyl]-3-(9H-xanthen-9-yl)-D-alanine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(1S,2S)-2-[(2S)-2-amino-1-hydroxy-1-oxo-3-(9H-xanthen-9-yl)propan-2-yl]cyclopropane-1-carboxylic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAA CAY Z99 sing 481 n n NAA HNAA Z99 sing 482 n n NAA HNAB Z99 sing 483 n n OAB CAQ Z99 doub 484 n n CAR OAC Z99 sing 485 n n OAC HOAC Z99 sing 486 n n CAQ OAD Z99 sing 487 n n OAD HOAD Z99 sing 488 n n OAE CAR Z99 doub 489 n n CAH CAF Z99 doub 490 n y CAF CAJ Z99 sing 491 n y CAF HAF Z99 sing 492 n n CAI CAG Z99 doub 493 n y CAG CAK Z99 sing 494 n y CAG HAG Z99 sing 495 n n CAL CAH Z99 sing 496 n y CAH HAH Z99 sing 497 n n CAM CAI Z99 sing 498 n y CAI HAI Z99 sing 499 n n CAS CAJ Z99 doub 500 n y CAJ HAJ Z99 sing 501 n n CAT CAK Z99 doub 502 n y CAK HAK Z99 sing 503 n n CAL CAU Z99 doub 504 n y CAL HAL Z99 sing 505 n n CAM CAV Z99 doub 506 n y CAM HAM Z99 sing 507 n n CAY CAN Z99 sing 508 n n CAN CAW Z99 sing 509 n n CAN HAN Z99 sing 510 n n CAN HANA Z99 sing 511 n n CAZ CAO Z99 sing 512 n n CAO CAX Z99 sing 513 n n CAO HAO Z99 sing 514 n n CAO HAOA Z99 sing 515 n n CAS OAP Z99 sing 516 n n CAT OAP Z99 sing 517 n n CAQ CAX Z99 sing 518 n n CAY CAR Z99 sing 519 n n CAU CAS Z99 sing 520 n y CAV CAT Z99 sing 521 n y CAW CAU Z99 sing 522 n n CAW CAV Z99 sing 523 n n CAW HAW Z99 sing 524 n n CAZ CAX Z99 sing 525 n n CAX HAX Z99 sing 526 n n CAZ CAY Z99 sing 527 n n CAZ HAZ Z99 sing 528 n n # _atom_sites.entry_id 8JCY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG 2 1 2001 2001 NAG NAG . D 4 Z99 2 1 2002 2101 Z99 LY3 . E 5 CLR 2 1 2003 3 CLR CLR . F 5 CLR 2 1 2004 5 CLR CLR . G 5 CLR 2 1 2005 6 CLR CLR . H 3 NAG 3 1 2001 2001 NAG NAG . I 4 Z99 3 1 2002 2101 Z99 LY3 . J 5 CLR 3 1 2003 1 CLR CLR . K 5 CLR 3 1 2004 2 CLR CLR . L 5 CLR 3 1 2005 4 CLR CLR . M 5 CLR 3 1 2006 7 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NAA Z99 . . . I 4 195.367 170.947 257.036 1 40.86 ? NAA Z99 2002 3 1 HETATM 2 O OAB Z99 . . . I 4 192.46 170.098 260.581 1 40.86 ? OAB Z99 2002 3 1 HETATM 3 O OAC Z99 . . . I 4 194.101 173.568 257.065 1 40.86 ? OAC Z99 2002 3 1 HETATM 4 O OAD Z99 . . . I 4 194.24 169.097 261.379 1 40.86 ? OAD Z99 2002 3 1 HETATM 5 O OAE Z99 . . . I 4 192.658 172.641 258.387 1 40.86 ? OAE Z99 2002 3 1 HETATM 6 C CAF Z99 . . . I 4 189.709 174.2 254.405 1 40.86 ? CAF Z99 2002 3 1 HETATM 7 C CAG Z99 . . . I 4 190.116 167.306 253.764 1 40.86 ? CAG Z99 2002 3 1 HETATM 8 C CAH Z99 . . . I 4 191.092 174.295 254.528 1 40.86 ? CAH Z99 2002 3 1 HETATM 9 C CAI Z99 . . . I 4 191.504 167.348 253.897 1 40.86 ? CAI Z99 2002 3 1 HETATM 10 C CAJ Z99 . . . I 4 189.052 173.003 254.664 1 40.86 ? CAJ Z99 2002 3 1 HETATM 11 C CAK Z99 . . . I 4 189.329 168.358 254.222 1 40.86 ? CAK Z99 2002 3 1 HETATM 12 C CAL Z99 . . . I 4 191.824 173.184 254.914 1 40.86 ? CAL Z99 2002 3 1 HETATM 13 C CAM Z99 . . . I 4 192.111 168.446 254.495 1 40.86 ? CAM Z99 2002 3 1 HETATM 14 C CAN Z99 . . . I 4 193.411 170.872 255.561 1 40.86 ? CAN Z99 2002 3 1 HETATM 15 C CAO Z99 . . . I 4 193.791 168.741 257.986 1 40.86 ? CAO Z99 2002 3 1 HETATM 16 O OAP Z99 . . . I 4 189.173 170.599 255.325 1 40.86 ? OAP Z99 2002 3 1 HETATM 17 C CAQ Z99 . . . I 4 193.613 169.631 260.431 1 40.86 ? CAQ Z99 2002 3 1 HETATM 18 C CAR Z99 . . . I 4 193.554 172.531 257.515 1 40.86 ? CAR Z99 2002 3 1 HETATM 19 C CAS Z99 . . . I 4 189.793 171.88 255.048 1 40.86 ? CAS Z99 2002 3 1 HETATM 20 C CAT Z99 . . . I 4 189.939 169.469 254.826 1 40.86 ? CAT Z99 2002 3 1 HETATM 21 C CAU Z99 . . . I 4 191.15 171.984 255.17 1 40.86 ? CAU Z99 2002 3 1 HETATM 22 C CAV Z99 . . . I 4 191.304 169.496 254.95 1 40.86 ? CAV Z99 2002 3 1 HETATM 23 C CAW Z99 . . . I 4 191.871 170.729 255.617 1 40.86 ? CAW Z99 2002 3 1 HETATM 24 C CAX Z99 . . . I 4 194.254 169.735 259.059 1 40.86 ? CAX Z99 2002 3 1 HETATM 25 C CAY Z99 . . . I 4 193.939 171.153 257.009 1 40.86 ? CAY Z99 2002 3 1 HETATM 26 C CAZ Z99 . . . I 4 193.277 170.182 257.98 1 40.86 ? CAZ Z99 2002 3 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #