data_8JD0 # _model_server_result.job_id BZo4AZG4pKBVEWpnfQ3ZCA _model_server_result.datetime_utc '2024-11-23 09:53:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jd0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1005}' # _entry.id 8JD0 # _exptl.entry_id 8JD0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JD0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JD0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 42 2 CYS 50 1_555 A SG CYS 84 2 CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 226 2 CYS 234 1_555 A SG CYS 510 2 CYS 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 347 2 CYS 355 1_555 A SG CYS 354 2 CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 392 2 CYS 400 1_555 A SG CYS 399 2 CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 492 2 CYS 500 1_555 A SG CYS 511 2 CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 496 2 CYS 504 1_555 A SG CYS 514 2 CYS 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 A SG CYS 517 2 CYS 525 1_555 A SG CYS 529 2 CYS 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 A SG CYS 532 2 CYS 540 1_555 A SG CYS 545 2 CYS 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 A SG CYS 624 2 CYS 632 1_555 A SG CYS 713 2 CYS 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 B SG CYS 66 3 CYS 57 1_555 B SG CYS 108 3 CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 B SG CYS 249 3 CYS 240 1_555 B SG CYS 536 3 CYS 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 B SG CYS 370 3 CYS 361 1_555 B SG CYS 382 3 CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf13 B SG CYS 421 3 CYS 412 1_555 B SG CYS 428 3 CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf14 B SG CYS 518 3 CYS 509 1_555 B SG CYS 537 3 CYS 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf15 B SG CYS 522 3 CYS 513 1_555 B SG CYS 540 3 CYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf16 B SG CYS 543 3 CYS 534 1_555 B SG CYS 555 3 CYS 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf17 B SG CYS 558 3 CYS 549 1_555 B SG CYS 571 3 CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf18 B SG CYS 650 3 CYS 641 1_555 B SG CYS 739 3 CYS 730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 195 2 ASN 203 1_555 C C1 NAG . 2 NAG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 B ND2 ASN 218 3 ASN 209 1_555 J C1 NAG . 3 NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 8JD0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG 2 1 1101 2000 NAG NAG . D 4 J9R 2 1 1102 2101 J9R ABC . E 5 CLR 2 1 1103 4 CLR CLR . F 5 CLR 2 1 1104 6 CLR CLR . G 5 CLR 2 1 1105 7 CLR CLR . H 5 CLR 2 1 1106 10 CLR CLR . I 6 GLU 3 1 1001 901 GLU GLB . J 3 NAG 3 1 1002 2000 NAG NAG . K 5 CLR 3 1 1003 1 CLR CLR . L 5 CLR 3 1 1004 2 CLR CLR . M 5 CLR 3 1 1005 5 CLR CLR . N 5 CLR 3 1 1006 8 CLR CLR . O 5 CLR 3 1 1007 9 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . M 5 187.688 192.645 146.803 1 68.7 ? C1 CLR 1005 3 1 HETATM 2 C C2 CLR . . . M 5 187.299 193.688 145.753 1 68.01 ? C2 CLR 1005 3 1 HETATM 3 C C3 CLR . . . M 5 186.213 194.602 146.264 1 66.21 ? C3 CLR 1005 3 1 HETATM 4 C C4 CLR . . . M 5 186.673 195.279 147.541 1 67.32 ? C4 CLR 1005 3 1 HETATM 5 C C5 CLR . . . M 5 187.107 194.279 148.592 1 68.76 ? C5 CLR 1005 3 1 HETATM 6 C C6 CLR . . . M 5 186.594 194.309 149.814 1 68.3 ? C6 CLR 1005 3 1 HETATM 7 C C7 CLR . . . M 5 187.027 193.438 150.951 1 68.37 ? C7 CLR 1005 3 1 HETATM 8 C C8 CLR . . . M 5 188.301 192.655 150.647 1 67.43 ? C8 CLR 1005 3 1 HETATM 9 C C9 CLR . . . M 5 188.244 192.115 149.206 1 66.58 ? C9 CLR 1005 3 1 HETATM 10 C C10 CLR . . . M 5 188.145 193.252 148.15 1 68.33 ? C10 CLR 1005 3 1 HETATM 11 C C11 CLR . . . M 5 189.399 191.145 148.915 1 66.53 ? C11 CLR 1005 3 1 HETATM 12 C C12 CLR . . . M 5 189.502 190.016 149.945 1 67.34 ? C12 CLR 1005 3 1 HETATM 13 C C13 CLR . . . M 5 189.669 190.57 151.363 1 69.76 ? C13 CLR 1005 3 1 HETATM 14 C C14 CLR . . . M 5 188.459 191.491 151.619 1 68.14 ? C14 CLR 1005 3 1 HETATM 15 C C15 CLR . . . M 5 188.514 191.776 153.118 1 68.05 ? C15 CLR 1005 3 1 HETATM 16 C C16 CLR . . . M 5 189.075 190.474 153.727 1 67.81 ? C16 CLR 1005 3 1 HETATM 17 C C17 CLR . . . M 5 189.487 189.564 152.539 1 69.53 ? C17 CLR 1005 3 1 HETATM 18 C C18 CLR . . . M 5 191.005 191.32 151.504 1 67.81 ? C18 CLR 1005 3 1 HETATM 19 C C19 CLR . . . M 5 189.487 193.985 147.966 1 67.56 ? C19 CLR 1005 3 1 HETATM 20 C C20 CLR . . . M 5 190.609 188.571 152.901 1 67.89 ? C20 CLR 1005 3 1 HETATM 21 C C21 CLR . . . M 5 190.86 187.53 151.813 1 66.53 ? C21 CLR 1005 3 1 HETATM 22 C C22 CLR . . . M 5 190.31 187.87 154.234 1 67.18 ? C22 CLR 1005 3 1 HETATM 23 C C23 CLR . . . M 5 191.264 186.751 154.583 1 67.28 ? C23 CLR 1005 3 1 HETATM 24 C C24 CLR . . . M 5 190.954 186.076 155.896 1 66.9 ? C24 CLR 1005 3 1 HETATM 25 C C25 CLR . . . M 5 191.823 184.863 156.23 1 67.61 ? C25 CLR 1005 3 1 HETATM 26 C C26 CLR . . . M 5 191.586 183.723 155.25 1 68.32 ? C26 CLR 1005 3 1 HETATM 27 C C27 CLR . . . M 5 193.298 185.232 156.264 1 66.41 ? C27 CLR 1005 3 1 HETATM 28 O O1 CLR . . . M 5 185.895 195.587 145.271 1 65.33 ? O1 CLR 1005 3 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 28 #