data_8JD0
#
_model_server_result.job_id            8TWAhcJ4l5XYVbXFItJ--w 
_model_server_result.datetime_utc      '2024-11-21 13:38:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jd0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1101}' 
#
_entry.id    8JD0 
#
_exptl.entry_id    8JD0 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8JD0 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JD0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 42 2 CYS 50 1_555 A SG CYS 84 2 CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 226 2 CYS 234 1_555 A SG CYS 510 2 CYS 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 A SG CYS 347 2 CYS 355 1_555 A SG CYS 354 2 CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 A SG CYS 392 2 CYS 400 1_555 A SG CYS 399 2 CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 A SG CYS 492 2 CYS 500 1_555 A SG CYS 511 2 CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 A SG CYS 496 2 CYS 504 1_555 A SG CYS 514 2 CYS 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 A SG CYS 517 2 CYS 525 1_555 A SG CYS 529 2 CYS 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf8 A SG CYS 532 2 CYS 540 1_555 A SG CYS 545 2 CYS 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf9 A SG CYS 624 2 CYS 632 1_555 A SG CYS 713 2 CYS 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf10 B SG CYS 66 3 CYS 57 1_555 B SG CYS 108 3 CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf11 B SG CYS 249 3 CYS 240 1_555 B SG CYS 536 3 CYS 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf12 B SG CYS 370 3 CYS 361 1_555 B SG CYS 382 3 CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf13 B SG CYS 421 3 CYS 412 1_555 B SG CYS 428 3 CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf14 B SG CYS 518 3 CYS 509 1_555 B SG CYS 537 3 CYS 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf15 B SG CYS 522 3 CYS 513 1_555 B SG CYS 540 3 CYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf16 B SG CYS 543 3 CYS 534 1_555 B SG CYS 555 3 CYS 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf17 B SG CYS 558 3 CYS 549 1_555 B SG CYS 571 3 CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf18 B SG CYS 650 3 CYS 641 1_555 B SG CYS 739 3 CYS 730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A ND2 ASN 195 2 ASN 203 1_555 C C1 NAG . 2 NAG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale2 B ND2 ASN 218 3 ASN 209 1_555 J C1 NAG . 3 NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 365 n n 
C1 O1 NAG sing 366 n n 
C1 O5 NAG sing 367 n n 
C1 H1 NAG sing 368 n n 
C2 C3 NAG sing 369 n n 
C2 N2 NAG sing 370 n n 
C2 H2 NAG sing 371 n n 
C3 C4 NAG sing 372 n n 
C3 O3 NAG sing 373 n n 
C3 H3 NAG sing 374 n n 
C4 C5 NAG sing 375 n n 
C4 O4 NAG sing 376 n n 
C4 H4 NAG sing 377 n n 
C5 C6 NAG sing 378 n n 
C5 O5 NAG sing 379 n n 
C5 H5 NAG sing 380 n n 
C6 O6 NAG sing 381 n n 
C6 H61 NAG sing 382 n n 
C6 H62 NAG sing 383 n n 
C7 C8 NAG sing 384 n n 
C7 N2 NAG sing 385 n n 
C7 O7 NAG doub 386 n n 
C8 H81 NAG sing 387 n n 
C8 H82 NAG sing 388 n n 
C8 H83 NAG sing 389 n n 
N2 HN2 NAG sing 390 n n 
O1 HO1 NAG sing 391 n n 
O3 HO3 NAG sing 392 n n 
O4 HO4 NAG sing 393 n n 
O6 HO6 NAG sing 394 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8JD0 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG 2 1 1101 2000 NAG NAG . 
D 4 J9R 2 1 1102 2101 J9R ABC . 
E 5 CLR 2 1 1103 4 CLR CLR . 
F 5 CLR 2 1 1104 6 CLR CLR . 
G 5 CLR 2 1 1105 7 CLR CLR . 
H 5 CLR 2 1 1106 10 CLR CLR . 
I 6 GLU 3 1 1001 901 GLU GLB . 
J 3 NAG 3 1 1002 2000 NAG NAG . 
K 5 CLR 3 1 1003 1 CLR CLR . 
L 5 CLR 3 1 1004 2 CLR CLR . 
M 5 CLR 3 1 1005 5 CLR CLR . 
N 5 CLR 3 1 1006 8 CLR CLR . 
O 5 CLR 3 1 1007 9 CLR CLR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 3 185.729 225.937 221.857 1 50.31 ? C1 NAG 1101 2 1 
HETATM 2 C C2 NAG . . . C 3 184.863 227.171 222.104 1 50.78 ? C2 NAG 1101 2 1 
HETATM 3 C C3 NAG . . . C 3 183.437 226.92 221.623 1 51.09 ? C3 NAG 1101 2 1 
HETATM 4 C C4 NAG . . . C 3 183.438 226.458 220.172 1 49.1 ? C4 NAG 1101 2 1 
HETATM 5 C C5 NAG . . . C 3 184.365 225.258 220 1 52.53 ? C5 NAG 1101 2 1 
HETATM 6 C C6 NAG . . . C 3 184.509 224.823 218.56 1 51.98 ? C6 NAG 1101 2 1 
HETATM 7 C C7 NAG . . . C 3 185.209 228.759 223.949 1 49.4 ? C7 NAG 1101 2 1 
HETATM 8 C C8 NAG . . . C 3 185.592 229.756 222.896 1 49.97 ? C8 NAG 1101 2 1 
HETATM 9 N N2 NAG . . . C 3 184.871 227.541 223.511 1 48.8 ? N2 NAG 1101 2 1 
HETATM 10 O O3 NAG . . . C 3 182.675 228.115 221.753 1 54.01 ? O3 NAG 1101 2 1 
HETATM 11 O O4 NAG . . . C 3 182.121 226.095 219.776 1 48.3 ? O4 NAG 1101 2 1 
HETATM 12 O O5 NAG . . . C 3 185.682 225.586 220.467 1 53.78 ? O5 NAG 1101 2 1 
HETATM 13 O O6 NAG . . . C 3 185.258 223.621 218.452 1 51.19 ? O6 NAG 1101 2 1 
HETATM 14 O O7 NAG . . . C 3 185.206 229.043 225.143 1 49.88 ? O7 NAG 1101 2 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#