data_8JD0 # _model_server_result.job_id SopKZJh2eo72RCY02em6nA _model_server_result.datetime_utc '2024-10-19 10:18:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jd0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1102}' # _entry.id 8JD0 # _exptl.entry_id 8JD0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 419.4 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(1-methylpyrazol-4-yl)-7-[[(2~{S})-2-(trifluoromethyl)morpholin-4-yl]methyl]quinoline-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JD0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JD0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 42 2 CYS 50 1_555 A SG CYS 84 2 CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 226 2 CYS 234 1_555 A SG CYS 510 2 CYS 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 347 2 CYS 355 1_555 A SG CYS 354 2 CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 392 2 CYS 400 1_555 A SG CYS 399 2 CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 492 2 CYS 500 1_555 A SG CYS 511 2 CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 496 2 CYS 504 1_555 A SG CYS 514 2 CYS 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 A SG CYS 517 2 CYS 525 1_555 A SG CYS 529 2 CYS 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 A SG CYS 532 2 CYS 540 1_555 A SG CYS 545 2 CYS 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 A SG CYS 624 2 CYS 632 1_555 A SG CYS 713 2 CYS 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 B SG CYS 66 3 CYS 57 1_555 B SG CYS 108 3 CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 B SG CYS 249 3 CYS 240 1_555 B SG CYS 536 3 CYS 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 B SG CYS 370 3 CYS 361 1_555 B SG CYS 382 3 CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf13 B SG CYS 421 3 CYS 412 1_555 B SG CYS 428 3 CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf14 B SG CYS 518 3 CYS 509 1_555 B SG CYS 537 3 CYS 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf15 B SG CYS 522 3 CYS 513 1_555 B SG CYS 540 3 CYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf16 B SG CYS 543 3 CYS 534 1_555 B SG CYS 555 3 CYS 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf17 B SG CYS 558 3 CYS 549 1_555 B SG CYS 571 3 CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf18 B SG CYS 650 3 CYS 641 1_555 B SG CYS 739 3 CYS 730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 195 2 ASN 203 1_555 C C1 NAG . 2 NAG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 B ND2 ASN 218 3 ASN 209 1_555 J C1 NAG . 3 NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C20 H20 F3 N5 O2' _chem_comp.formula_weight 419.4 _chem_comp.id J9R _chem_comp.mon_nstd_flag . _chem_comp.name 4-(1-methylpyrazol-4-yl)-7-[[(2~{S})-2-(trifluoromethyl)morpholin-4-yl]methyl]quinoline-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C6 J9R sing 248 n n C6 O J9R doub 249 n n C6 C5 J9R sing 250 n n C5 N2 J9R doub 251 n y C5 C4 J9R sing 252 n y N2 C7 J9R sing 253 n y C4 C3 J9R doub 254 n y C7 C8 J9R doub 255 n y C7 C18 J9R sing 256 n y C3 C18 J9R sing 257 n y C3 C2 J9R sing 258 n n C8 C9 J9R sing 259 n y C18 C17 J9R doub 260 n y C2 C19 J9R sing 261 n y C2 C1 J9R doub 262 n y C19 N4 J9R doub 263 n y C1 N J9R sing 264 n y C9 C10 J9R sing 265 n n C9 C16 J9R doub 266 n y C17 C16 J9R sing 267 n y N4 N J9R sing 268 n y C10 N3 J9R sing 269 n n N C J9R sing 270 n n N3 C15 J9R sing 271 n n N3 C11 J9R sing 272 n n C15 C13 J9R sing 273 n n C11 C12 J9R sing 274 n n C13 C14 J9R sing 275 n n C13 O1 J9R sing 276 n n C12 O1 J9R sing 277 n n F C14 J9R sing 278 n n F1 C14 J9R sing 279 n n C14 F2 J9R sing 280 n n N1 H1 J9R sing 281 n n N1 H2 J9R sing 282 n n C4 H4 J9R sing 283 n n C8 H5 J9R sing 284 n n C10 H6 J9R sing 285 n n C10 H7 J9R sing 286 n n C13 H8 J9R sing 287 n n C15 H9 J9R sing 288 n n C15 H10 J9R sing 289 n n C17 H11 J9R sing 290 n n C H12 J9R sing 291 n n C H13 J9R sing 292 n n C H14 J9R sing 293 n n C1 H15 J9R sing 294 n n C11 H16 J9R sing 295 n n C11 H17 J9R sing 296 n n C12 H18 J9R sing 297 n n C12 H19 J9R sing 298 n n C16 H20 J9R sing 299 n n C19 H21 J9R sing 300 n n # _atom_sites.entry_id 8JD0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG 2 1 1101 2000 NAG NAG . D 4 J9R 2 1 1102 2101 J9R ABC . E 5 CLR 2 1 1103 4 CLR CLR . F 5 CLR 2 1 1104 6 CLR CLR . G 5 CLR 2 1 1105 7 CLR CLR . H 5 CLR 2 1 1106 10 CLR CLR . I 6 GLU 3 1 1001 901 GLU GLB . J 3 NAG 3 1 1002 2000 NAG NAG . K 5 CLR 3 1 1003 1 CLR CLR . L 5 CLR 3 1 1004 2 CLR CLR . M 5 CLR 3 1 1005 5 CLR CLR . N 5 CLR 3 1 1006 8 CLR CLR . O 5 CLR 3 1 1007 9 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 J9R . . . D 4 204.76 203.3 155.564 1 20 ? N1 J9R 1102 2 1 HETATM 2 N N3 J9R . . . D 4 206.894 209.138 160.958 1 20 ? N3 J9R 1102 2 1 HETATM 3 C C4 J9R . . . D 4 204.847 206.898 154.521 1 20 ? C4 J9R 1102 2 1 HETATM 4 C C5 J9R . . . D 4 204.616 205.868 155.425 1 20 ? C5 J9R 1102 2 1 HETATM 5 C C6 J9R . . . D 4 204.218 204.486 154.927 1 20 ? C6 J9R 1102 2 1 HETATM 6 C C7 J9R . . . D 4 205.091 207.342 157.218 1 20 ? C7 J9R 1102 2 1 HETATM 7 C C8 J9R . . . D 4 205.21 207.544 158.622 1 20 ? C8 J9R 1102 2 1 HETATM 8 C C10 J9R . . . D 4 205.687 208.991 160.622 1 20 ? C10 J9R 1102 2 1 HETATM 9 C C13 J9R . . . D 4 208.737 207.965 162.045 1 20 ? C13 J9R 1102 2 1 HETATM 10 C C15 J9R . . . D 4 207.439 207.899 161.229 1 20 ? C15 J9R 1102 2 1 HETATM 11 C C17 J9R . . . D 4 205.69 209.646 156.856 1 20 ? C17 J9R 1102 2 1 HETATM 12 N N J9R . . . D 4 206.198 210.306 152.225 1 20 ? N J9R 1102 2 1 HETATM 13 C C J9R . . . D 4 206.924 210.635 151.015 1 20 ? C J9R 1102 2 1 HETATM 14 O O J9R . . . D 4 203.459 204.386 154.023 1 20 ? O J9R 1102 2 1 HETATM 15 C C1 J9R . . . D 4 206.268 209.157 152.851 1 20 ? C1 J9R 1102 2 1 HETATM 16 C C11 J9R . . . D 4 206.938 209.988 162.05 1 20 ? C11 J9R 1102 2 1 HETATM 17 C C12 J9R . . . D 4 207.338 209.253 163.333 1 20 ? C12 J9R 1102 2 1 HETATM 18 C C14 J9R . . . D 4 209.833 208.637 161.182 1 20 ? C14 J9R 1102 2 1 HETATM 19 C C16 J9R . . . D 4 205.808 209.845 158.23 1 20 ? C16 J9R 1102 2 1 HETATM 20 C C18 J9R . . . D 4 205.324 208.367 156.348 1 20 ? C18 J9R 1102 2 1 HETATM 21 C C19 J9R . . . D 4 204.868 210.502 153.939 1 20 ? C19 J9R 1102 2 1 HETATM 22 C C2 J9R . . . D 4 205.444 209.239 153.947 1 20 ? C2 J9R 1102 2 1 HETATM 23 C C3 J9R . . . D 4 205.198 208.133 154.969 1 20 ? C3 J9R 1102 2 1 HETATM 24 C C9 J9R . . . D 4 205.568 208.789 159.113 1 20 ? C9 J9R 1102 2 1 HETATM 25 F F J9R . . . D 4 209.403 209.87 160.783 1 20 ? F J9R 1102 2 1 HETATM 26 F F1 J9R . . . D 4 210.977 208.768 161.916 1 20 ? F1 J9R 1102 2 1 HETATM 27 F F2 J9R . . . D 4 210.079 207.862 160.084 1 20 ? F2 J9R 1102 2 1 HETATM 28 N N2 J9R . . . D 4 204.735 206.084 156.751 1 20 ? N2 J9R 1102 2 1 HETATM 29 N N4 J9R . . . D 4 205.343 211.153 152.875 1 20 ? N4 J9R 1102 2 1 HETATM 30 O O1 J9R . . . D 4 208.59 208.682 163.224 1 20 ? O1 J9R 1102 2 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #