data_8JD5 # _model_server_result.job_id kivdTSYLhPwvsXVeXFeoPw _model_server_result.datetime_utc '2025-02-05 12:02:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jd5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":1004}' # _entry.id 8JD5 # _exptl.entry_id 8JD5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 272.329 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-methyl-N-(4-methylpyrimidin-2-yl)-4-(1H-pyrazol-4-yl)-1,3-thiazol-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JD5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JD5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 12 _struct_asym.id Q _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 42 2 CYS 50 1_555 A SG CYS 84 2 CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 226 2 CYS 234 1_555 A SG CYS 510 2 CYS 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 347 2 CYS 355 1_555 A SG CYS 354 2 CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 392 2 CYS 400 1_555 A SG CYS 399 2 CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 492 2 CYS 500 1_555 A SG CYS 511 2 CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 A SG CYS 496 2 CYS 504 1_555 A SG CYS 514 2 CYS 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 A SG CYS 517 2 CYS 525 1_555 A SG CYS 529 2 CYS 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf8 A SG CYS 624 2 CYS 632 1_555 A SG CYS 713 2 CYS 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf9 B SG CYS 65 4 CYS 67 1_555 B SG CYS 107 4 CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 B SG CYS 247 4 CYS 249 1_555 B SG CYS 536 4 CYS 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 B SG CYS 426 4 CYS 428 1_555 B SG CYS 433 4 CYS 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 B SG CYS 518 4 CYS 520 1_555 B SG CYS 537 4 CYS 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf13 B SG CYS 522 4 CYS 524 1_555 B SG CYS 540 4 CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf14 B SG CYS 543 4 CYS 545 1_555 B SG CYS 555 4 CYS 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf15 B SG CYS 558 4 CYS 560 1_555 B SG CYS 571 4 CYS 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf16 B SG CYS 650 4 CYS 652 1_555 B SG CYS 744 4 CYS 746 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf17 F SG CYS 22 H CYS 22 1_555 F SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf18 F SG CYS 159 H CYS 159 1_555 F SG CYS 229 H CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 195 2 ASN 203 1_555 K C1 NAG . 2 NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 B ND2 ASN 452 4 ASN 454 1_555 P C1 NAG . 4 NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C12 H12 N6 S' _chem_comp.formula_weight 272.329 _chem_comp.id BQI _chem_comp.mon_nstd_flag . _chem_comp.name 5-methyl-N-(4-methylpyrimidin-2-yl)-4-(1H-pyrazol-4-yl)-1,3-thiazol-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ADX88178 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C06 C07 BQI doub 70 n y C06 N05 BQI sing 71 n y C07 C02 BQI sing 72 n y N05 C04 BQI doub 73 n y C02 C01 BQI sing 74 n n C02 N03 BQI doub 75 n y C04 N03 BQI sing 76 n y C04 N08 BQI sing 77 n n N08 C09 BQI sing 78 n n S13 C09 BQI sing 79 n y S13 C12 BQI sing 80 n y C09 N10 BQI doub 81 n y C12 C14 BQI sing 82 n n C12 C11 BQI doub 83 n y N10 C11 BQI sing 84 n y C11 C15 BQI sing 85 n n C16 C15 BQI doub 86 n y C16 N17 BQI sing 87 n y C15 C19 BQI sing 88 n y N17 N18 BQI sing 89 n y C19 N18 BQI doub 90 n y C01 H1 BQI sing 91 n n C01 H2 BQI sing 92 n n C01 H3 BQI sing 93 n n C06 H4 BQI sing 94 n n C07 H5 BQI sing 95 n n C14 H6 BQI sing 96 n n C14 H7 BQI sing 97 n n C14 H8 BQI sing 98 n n C16 H9 BQI sing 99 n n C19 H10 BQI sing 100 n n N08 H11 BQI sing 101 n n N17 H12 BQI sing 102 n n # _atom_sites.entry_id 8JD5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 HZR 2 1 901 901 HZR JNJ . H 8 GLU 2 1 902 902 GLU GLA . I 9 CLR 2 1 903 904 CLR CLR . J 10 PEF 2 1 904 1006 PEF LIP . K 11 NAG 2 1 905 2001 NAG NAG . L 9 CLR 2 1 906 2101 CLR CLR . M 9 CLR 2 1 907 2201 CLR CLR . N 9 CLR 4 1 1001 903 CLR CLR . O 8 GLU 4 1 1002 901 GLU GLA . P 11 NAG 4 1 1003 2001 NAG NAG . Q 12 BQI 4 1 1004 2101 BQI ADX . R 9 CLR 4 1 1005 2102 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 BQI . . . Q 12 190.717 208.842 184.02 1 69.37 ? C01 BQI 1004 4 1 HETATM 2 C C02 BQI . . . Q 12 192.17 208.491 183.727 1 69.37 ? C02 BQI 1004 4 1 HETATM 3 C C04 BQI . . . Q 12 194.342 208.381 184.414 1 69.37 ? C04 BQI 1004 4 1 HETATM 4 C C06 BQI . . . Q 12 193.866 207.675 182.288 1 69.37 ? C06 BQI 1004 4 1 HETATM 5 C C07 BQI . . . Q 12 192.528 207.976 182.49 1 69.37 ? C07 BQI 1004 4 1 HETATM 6 C C09 BQI . . . Q 12 196.129 207.476 185.893 1 69.37 ? C09 BQI 1004 4 1 HETATM 7 C C11 BQI . . . Q 12 197.816 206.328 186.915 1 69.37 ? C11 BQI 1004 4 1 HETATM 8 C C12 BQI . . . Q 12 197.17 205.217 186.346 1 69.37 ? C12 BQI 1004 4 1 HETATM 9 C C14 BQI . . . Q 12 197.57 203.749 186.451 1 69.37 ? C14 BQI 1004 4 1 HETATM 10 C C15 BQI . . . Q 12 199.079 206.206 187.762 1 69.37 ? C15 BQI 1004 4 1 HETATM 11 C C16 BQI . . . Q 12 200.292 206.898 187.58 1 69.37 ? C16 BQI 1004 4 1 HETATM 12 C C19 BQI . . . Q 12 199.28 205.383 188.891 1 69.37 ? C19 BQI 1004 4 1 HETATM 13 N N03 BQI . . . Q 12 193.084 208.679 184.658 1 69.37 ? N03 BQI 1004 4 1 HETATM 14 N N05 BQI . . . Q 12 194.74 207.887 183.256 1 69.37 ? N05 BQI 1004 4 1 HETATM 15 N N08 BQI . . . Q 12 195.319 208.597 185.464 1 69.37 ? N08 BQI 1004 4 1 HETATM 16 N N10 BQI . . . Q 12 197.23 207.531 186.65 1 69.37 ? N10 BQI 1004 4 1 HETATM 17 N N17 BQI . . . Q 12 201.101 206.492 188.527 1 69.37 ? N17 BQI 1004 4 1 HETATM 18 N N18 BQI . . . Q 12 200.503 205.595 189.304 1 69.37 ? N18 BQI 1004 4 1 HETATM 19 S S13 BQI . . . Q 12 195.844 205.855 185.513 1 69.37 ? S13 BQI 1004 4 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #