data_8JD5 # _model_server_result.job_id c-Vu3cgKqws3aeBfY8l98g _model_server_result.datetime_utc '2024-10-11 00:28:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jd5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":1005}' # _entry.id 8JD5 # _exptl.entry_id 8JD5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JD5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JD5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 I N N ? 9 L N N ? 9 M N N ? 9 N N N ? 9 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 42 2 CYS 50 1_555 A SG CYS 84 2 CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 226 2 CYS 234 1_555 A SG CYS 510 2 CYS 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 347 2 CYS 355 1_555 A SG CYS 354 2 CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 392 2 CYS 400 1_555 A SG CYS 399 2 CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 492 2 CYS 500 1_555 A SG CYS 511 2 CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 A SG CYS 496 2 CYS 504 1_555 A SG CYS 514 2 CYS 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 A SG CYS 517 2 CYS 525 1_555 A SG CYS 529 2 CYS 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf8 A SG CYS 624 2 CYS 632 1_555 A SG CYS 713 2 CYS 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf9 B SG CYS 65 4 CYS 67 1_555 B SG CYS 107 4 CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 B SG CYS 247 4 CYS 249 1_555 B SG CYS 536 4 CYS 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 B SG CYS 426 4 CYS 428 1_555 B SG CYS 433 4 CYS 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 B SG CYS 518 4 CYS 520 1_555 B SG CYS 537 4 CYS 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf13 B SG CYS 522 4 CYS 524 1_555 B SG CYS 540 4 CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf14 B SG CYS 543 4 CYS 545 1_555 B SG CYS 555 4 CYS 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf15 B SG CYS 558 4 CYS 560 1_555 B SG CYS 571 4 CYS 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf16 B SG CYS 650 4 CYS 652 1_555 B SG CYS 744 4 CYS 746 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf17 F SG CYS 22 H CYS 22 1_555 F SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf18 F SG CYS 159 H CYS 159 1_555 F SG CYS 229 H CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 195 2 ASN 203 1_555 K C1 NAG . 2 NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 B ND2 ASN 452 4 ASN 454 1_555 P C1 NAG . 4 NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 103 n n C1 C10 CLR sing 104 n n C1 H11 CLR sing 105 n n C1 H12 CLR sing 106 n n C2 C3 CLR sing 107 n n C2 H21 CLR sing 108 n n C2 H22 CLR sing 109 n n C3 C4 CLR sing 110 n n C3 O1 CLR sing 111 n n C3 H3 CLR sing 112 n n C4 C5 CLR sing 113 n n C4 H41 CLR sing 114 n n C4 H42 CLR sing 115 n n C5 C6 CLR doub 116 n n C5 C10 CLR sing 117 n n C6 C7 CLR sing 118 n n C6 H6 CLR sing 119 n n C7 C8 CLR sing 120 n n C7 H71 CLR sing 121 n n C7 H72 CLR sing 122 n n C8 C9 CLR sing 123 n n C8 C14 CLR sing 124 n n C8 H8 CLR sing 125 n n C9 C10 CLR sing 126 n n C9 C11 CLR sing 127 n n C9 H9 CLR sing 128 n n C10 C19 CLR sing 129 n n C11 C12 CLR sing 130 n n C11 H111 CLR sing 131 n n C11 H112 CLR sing 132 n n C12 C13 CLR sing 133 n n C12 H121 CLR sing 134 n n C12 H122 CLR sing 135 n n C13 C14 CLR sing 136 n n C13 C17 CLR sing 137 n n C13 C18 CLR sing 138 n n C14 C15 CLR sing 139 n n C14 H14 CLR sing 140 n n C15 C16 CLR sing 141 n n C15 H151 CLR sing 142 n n C15 H152 CLR sing 143 n n C16 C17 CLR sing 144 n n C16 H161 CLR sing 145 n n C16 H162 CLR sing 146 n n C17 C20 CLR sing 147 n n C17 H17 CLR sing 148 n n C18 H181 CLR sing 149 n n C18 H182 CLR sing 150 n n C18 H183 CLR sing 151 n n C19 H191 CLR sing 152 n n C19 H192 CLR sing 153 n n C19 H193 CLR sing 154 n n C20 C21 CLR sing 155 n n C20 C22 CLR sing 156 n n C20 H20 CLR sing 157 n n C21 H211 CLR sing 158 n n C21 H212 CLR sing 159 n n C21 H213 CLR sing 160 n n C22 C23 CLR sing 161 n n C22 H221 CLR sing 162 n n C22 H222 CLR sing 163 n n C23 C24 CLR sing 164 n n C23 H231 CLR sing 165 n n C23 H232 CLR sing 166 n n C24 C25 CLR sing 167 n n C24 H241 CLR sing 168 n n C24 H242 CLR sing 169 n n C25 C26 CLR sing 170 n n C25 C27 CLR sing 171 n n C25 H25 CLR sing 172 n n C26 H261 CLR sing 173 n n C26 H262 CLR sing 174 n n C26 H263 CLR sing 175 n n C27 H271 CLR sing 176 n n C27 H272 CLR sing 177 n n C27 H273 CLR sing 178 n n O1 H1 CLR sing 179 n n # _atom_sites.entry_id 8JD5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 HZR 2 1 901 901 HZR JNJ . H 8 GLU 2 1 902 902 GLU GLA . I 9 CLR 2 1 903 904 CLR CLR . J 10 PEF 2 1 904 1006 PEF LIP . K 11 NAG 2 1 905 2001 NAG NAG . L 9 CLR 2 1 906 2101 CLR CLR . M 9 CLR 2 1 907 2201 CLR CLR . N 9 CLR 4 1 1001 903 CLR CLR . O 8 GLU 4 1 1002 901 GLU GLA . P 11 NAG 4 1 1003 2001 NAG NAG . Q 12 BQI 4 1 1004 2101 BQI ADX . R 9 CLR 4 1 1005 2102 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . R 9 177.197 207.468 191.342 1 85.55 ? C1 CLR 1005 4 1 HETATM 2 C C2 CLR . . . R 9 176.982 207.844 192.81 1 85.55 ? C2 CLR 1005 4 1 HETATM 3 C C3 CLR . . . R 9 177.876 207.041 193.722 1 85.55 ? C3 CLR 1005 4 1 HETATM 4 C C4 CLR . . . R 9 179.325 207.246 193.325 1 85.55 ? C4 CLR 1005 4 1 HETATM 5 C C5 CLR . . . R 9 179.563 206.907 191.869 1 85.55 ? C5 CLR 1005 4 1 HETATM 6 C C6 CLR . . . R 9 180.494 206.032 191.522 1 85.55 ? C6 CLR 1005 4 1 HETATM 7 C C7 CLR . . . R 9 180.862 205.686 190.115 1 85.55 ? C7 CLR 1005 4 1 HETATM 8 C C8 CLR . . . R 9 180.266 206.655 189.099 1 85.55 ? C8 CLR 1005 4 1 HETATM 9 C C9 CLR . . . R 9 178.801 206.957 189.459 1 85.55 ? C9 CLR 1005 4 1 HETATM 10 C C10 CLR . . . R 9 178.66 207.615 190.862 1 85.55 ? C10 CLR 1005 4 1 HETATM 11 C C11 CLR . . . R 9 178.108 207.77 188.352 1 85.55 ? C11 CLR 1005 4 1 HETATM 12 C C12 CLR . . . R 9 178.255 207.152 186.955 1 85.55 ? C12 CLR 1005 4 1 HETATM 13 C C13 CLR . . . R 9 179.727 206.938 186.587 1 85.55 ? C13 CLR 1005 4 1 HETATM 14 C C14 CLR . . . R 9 180.321 206.054 187.702 1 85.55 ? C14 CLR 1005 4 1 HETATM 15 C C15 CLR . . . R 9 181.667 205.608 187.146 1 85.55 ? C15 CLR 1005 4 1 HETATM 16 C C16 CLR . . . R 9 181.368 205.35 185.659 1 85.55 ? C16 CLR 1005 4 1 HETATM 17 C C17 CLR . . . R 9 180.021 206.053 185.337 1 85.55 ? C17 CLR 1005 4 1 HETATM 18 C C18 CLR . . . R 9 180.463 208.283 186.468 1 85.55 ? C18 CLR 1005 4 1 HETATM 19 C C19 CLR . . . R 9 179.057 209.103 190.84 1 85.55 ? C19 CLR 1005 4 1 HETATM 20 C C20 CLR . . . R 9 180.011 206.669 183.925 1 85.55 ? C20 CLR 1005 4 1 HETATM 21 C C21 CLR . . . R 9 178.61 206.893 183.364 1 85.55 ? C21 CLR 1005 4 1 HETATM 22 C C22 CLR . . . R 9 180.864 205.82 182.969 1 85.55 ? C22 CLR 1005 4 1 HETATM 23 C C23 CLR . . . R 9 181.293 206.503 181.694 1 85.55 ? C23 CLR 1005 4 1 HETATM 24 C C24 CLR . . . R 9 182.351 205.73 180.942 1 85.55 ? C24 CLR 1005 4 1 HETATM 25 C C25 CLR . . . R 9 182.893 206.398 179.678 1 85.55 ? C25 CLR 1005 4 1 HETATM 26 C C26 CLR . . . R 9 184.048 205.606 179.086 1 85.55 ? C26 CLR 1005 4 1 HETATM 27 C C27 CLR . . . R 9 181.797 206.593 178.642 1 85.55 ? C27 CLR 1005 4 1 HETATM 28 O O1 CLR . . . R 9 177.677 207.44 195.085 1 85.55 ? O1 CLR 1005 4 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 48 _model_server_stats.query_time_ms 562 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 28 #