data_8JD5
#
_model_server_result.job_id            pkpUH-NupayVhWwzeqGQ-g 
_model_server_result.datetime_utc      '2024-10-11 00:23:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jd5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":901}' 
#
_entry.id    8JD5 
#
_exptl.entry_id    8JD5 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              344.878 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-butyl-3-chloranyl-4-(4-phenylpiperidin-1-yl)pyridin-2-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8JD5 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JD5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 42 2 CYS 50 1_555 A SG CYS 84 2 CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 226 2 CYS 234 1_555 A SG CYS 510 2 CYS 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 A SG CYS 347 2 CYS 355 1_555 A SG CYS 354 2 CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 A SG CYS 392 2 CYS 400 1_555 A SG CYS 399 2 CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 A SG CYS 492 2 CYS 500 1_555 A SG CYS 511 2 CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 A SG CYS 496 2 CYS 504 1_555 A SG CYS 514 2 CYS 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 A SG CYS 517 2 CYS 525 1_555 A SG CYS 529 2 CYS 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf8 A SG CYS 624 2 CYS 632 1_555 A SG CYS 713 2 CYS 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf9 B SG CYS 65 4 CYS 67 1_555 B SG CYS 107 4 CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf10 B SG CYS 247 4 CYS 249 1_555 B SG CYS 536 4 CYS 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf11 B SG CYS 426 4 CYS 428 1_555 B SG CYS 433 4 CYS 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf12 B SG CYS 518 4 CYS 520 1_555 B SG CYS 537 4 CYS 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf13 B SG CYS 522 4 CYS 524 1_555 B SG CYS 540 4 CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf14 B SG CYS 543 4 CYS 545 1_555 B SG CYS 555 4 CYS 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf15 B SG CYS 558 4 CYS 560 1_555 B SG CYS 571 4 CYS 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf16 B SG CYS 650 4 CYS 652 1_555 B SG CYS 744 4 CYS 746 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf17 F SG CYS 22 H CYS 22 1_555 F SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf18 F SG CYS 159 H CYS 159 1_555 F SG CYS 229 H CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 A ND2 ASN 195 2 ASN 203 1_555 K C1 NAG . 2 NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale2 B ND2 ASN 452 4 ASN 454 1_555 P C1 NAG . 4 NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
#
_chem_comp.formula           'C20 H25 Cl N2 O' 
_chem_comp.formula_weight    344.878 
_chem_comp.id                HZR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-butyl-3-chloranyl-4-(4-phenylpiperidin-1-yl)pyridin-2-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C13 C14 HZR doub 260 n y 
C13 C12 HZR sing 261 n y 
C14 C15 HZR sing 262 n y 
C12 C11 HZR doub 263 n y 
C15 C10 HZR doub 264 n y 
C11 C10 HZR sing 265 n y 
C10 C09 HZR sing 266 n n 
C16 C09 HZR sing 267 n n 
C16 C17 HZR sing 268 n n 
C09 C08 HZR sing 269 n n 
C17 N06 HZR sing 270 n n 
C24 C23 HZR sing 271 n n 
C08 C07 HZR sing 272 n n 
N06 C07 HZR sing 273 n n 
N06 C05 HZR sing 274 n n 
C23 C22 HZR sing 275 n n 
C22 C21 HZR sing 276 n n 
C03 CL4 HZR sing 277 n n 
C03 C05 HZR doub 278 n n 
C03 C02 HZR sing 279 n n 
C05 C18 HZR sing 280 n n 
C18 C19 HZR doub 281 n n 
C02 O01 HZR doub 282 n n 
C02 N20 HZR sing 283 n n 
N20 C21 HZR sing 284 n n 
N20 C19 HZR sing 285 n n 
C14 H1 HZR sing 286 n n 
C11 H2 HZR sing 287 n n 
C12 H3 HZR sing 288 n n 
C13 H4 HZR sing 289 n n 
C07 H7 HZR sing 290 n n 
C07 H8 HZR sing 291 n n 
C08 H9 HZR sing 292 n n 
C15 H10 HZR sing 293 n n 
C16 H11 HZR sing 294 n n 
C16 H12 HZR sing 295 n n 
C17 H13 HZR sing 296 n n 
C17 H14 HZR sing 297 n n 
C18 H15 HZR sing 298 n n 
C19 H17 HZR sing 299 n n 
C21 H19 HZR sing 300 n n 
C21 H20 HZR sing 301 n n 
C22 H21 HZR sing 302 n n 
C22 H22 HZR sing 303 n n 
C23 H23 HZR sing 304 n n 
C23 H24 HZR sing 305 n n 
C24 H25 HZR sing 306 n n 
C24 H26 HZR sing 307 n n 
C24 H27 HZR sing 308 n n 
C08 H5 HZR sing 309 n n 
C09 H6 HZR sing 310 n n 
#
_atom_sites.entry_id                     8JD5 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 7 HZR 2 1 901 901 HZR JNJ . 
H 8 GLU 2 1 902 902 GLU GLA . 
I 9 CLR 2 1 903 904 CLR CLR . 
J 10 PEF 2 1 904 1006 PEF LIP . 
K 11 NAG 2 1 905 2001 NAG NAG . 
L 9 CLR 2 1 906 2101 CLR CLR . 
M 9 CLR 2 1 907 2201 CLR CLR . 
N 9 CLR 4 1 1001 903 CLR CLR . 
O 8 GLU 4 1 1002 901 GLU GLA . 
P 11 NAG 4 1 1003 2001 NAG NAG . 
Q 12 BQI 4 1 1004 2101 BQI ADX . 
R 9 CLR 4 1 1005 2102 CLR CLR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C14 HZR . . . G 7 195.567 192.916 188.427 1 92.47 ? C14 HZR 901 2 1 
HETATM 2 C C11 HZR . . . G 7 194.918 194.123 186.02 1 92.47 ? C11 HZR 901 2 1 
HETATM 3 C C10 HZR . . . G 7 194.611 192.788 186.233 1 92.47 ? C10 HZR 901 2 1 
HETATM 4 C C12 HZR . . . G 7 195.549 194.855 187.013 1 92.47 ? C12 HZR 901 2 1 
HETATM 5 C C13 HZR . . . G 7 195.873 194.252 188.216 1 92.47 ? C13 HZR 901 2 1 
HETATM 6 C C02 HZR . . . G 7 191.948 191.968 178.574 1 92.47 ? C02 HZR 901 2 1 
HETATM 7 C C03 HZR . . . G 7 192.243 191.441 179.975 1 92.47 ? C03 HZR 901 2 1 
HETATM 8 C C05 HZR . . . G 7 192.535 192.4 181.083 1 92.47 ? C05 HZR 901 2 1 
HETATM 9 C C07 HZR . . . G 7 191.937 192.19 183.64 1 92.47 ? C07 HZR 901 2 1 
HETATM 10 C C08 HZR . . . G 7 192.73 192.758 184.816 1 92.47 ? C08 HZR 901 2 1 
HETATM 11 C C09 HZR . . . G 7 193.916 191.981 185.133 1 92.47 ? C09 HZR 901 2 1 
HETATM 12 C C15 HZR . . . G 7 194.936 192.184 187.436 1 92.47 ? C15 HZR 901 2 1 
HETATM 13 C C16 HZR . . . G 7 194.787 191.761 183.993 1 92.47 ? C16 HZR 901 2 1 
HETATM 14 C C17 HZR . . . G 7 194.061 191.128 182.811 1 92.47 ? C17 HZR 901 2 1 
HETATM 15 C C18 HZR . . . G 7 192.537 193.868 180.814 1 92.47 ? C18 HZR 901 2 1 
HETATM 16 C C19 HZR . . . G 7 192.242 194.388 179.412 1 92.47 ? C19 HZR 901 2 1 
HETATM 17 C C21 HZR . . . G 7 191.672 193.942 176.981 1 92.47 ? C21 HZR 901 2 1 
HETATM 18 C C22 HZR . . . G 7 192.601 195.121 176.691 1 92.47 ? C22 HZR 901 2 1 
HETATM 19 C C23 HZR . . . G 7 192.241 195.858 175.403 1 92.47 ? C23 HZR 901 2 1 
HETATM 20 C C24 HZR . . . G 7 193.303 196.886 175.017 1 92.47 ? C24 HZR 901 2 1 
HETATM 21 N N06 HZR . . . G 7 192.823 191.93 182.426 1 92.47 ? N06 HZR 901 2 1 
HETATM 22 N N20 HZR . . . G 7 191.95 193.432 178.311 1 92.47 ? N20 HZR 901 2 1 
HETATM 23 O O01 HZR . . . G 7 191.715 191.21 177.695 1 92.47 ? O01 HZR 901 2 1 
HETATM 24 CL CL4 HZR . . . G 7 192.237 189.682 180.28 1 92.47 ? CL4 HZR 901 2 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    41 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           24 
#