data_8JD5
#
_model_server_result.job_id            5HU9v6Swm9R1r4fzg_0_iQ 
_model_server_result.datetime_utc      '2025-02-05 11:51:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jd5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":902}' 
#
_entry.id    8JD5 
#
_exptl.entry_id    8JD5 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              147.129 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'GLUTAMIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8JD5 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JD5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 H N N 
? 8 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 42 2 CYS 50 1_555 A SG CYS 84 2 CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 226 2 CYS 234 1_555 A SG CYS 510 2 CYS 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 A SG CYS 347 2 CYS 355 1_555 A SG CYS 354 2 CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 A SG CYS 392 2 CYS 400 1_555 A SG CYS 399 2 CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 A SG CYS 492 2 CYS 500 1_555 A SG CYS 511 2 CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 A SG CYS 496 2 CYS 504 1_555 A SG CYS 514 2 CYS 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 A SG CYS 517 2 CYS 525 1_555 A SG CYS 529 2 CYS 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf8 A SG CYS 624 2 CYS 632 1_555 A SG CYS 713 2 CYS 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf9 B SG CYS 65 4 CYS 67 1_555 B SG CYS 107 4 CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf10 B SG CYS 247 4 CYS 249 1_555 B SG CYS 536 4 CYS 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf11 B SG CYS 426 4 CYS 428 1_555 B SG CYS 433 4 CYS 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf12 B SG CYS 518 4 CYS 520 1_555 B SG CYS 537 4 CYS 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf13 B SG CYS 522 4 CYS 524 1_555 B SG CYS 540 4 CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf14 B SG CYS 543 4 CYS 545 1_555 B SG CYS 555 4 CYS 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf15 B SG CYS 558 4 CYS 560 1_555 B SG CYS 571 4 CYS 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf16 B SG CYS 650 4 CYS 652 1_555 B SG CYS 744 4 CYS 746 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf17 F SG CYS 22 H CYS 22 1_555 F SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf18 F SG CYS 159 H CYS 159 1_555 F SG CYS 229 H CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 A ND2 ASN 195 2 ASN 203 1_555 K C1 NAG . 2 NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale2 B ND2 ASN 452 4 ASN 454 1_555 P C1 NAG . 4 NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
#
_chem_comp.formula           'C5 H9 N O4' 
_chem_comp.formula_weight    147.129 
_chem_comp.id                GLU 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              'GLUTAMIC ACID' 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA GLU sing 212 n n 
N H GLU sing 213 n n 
N H2 GLU sing 214 n n 
CA C GLU sing 215 n n 
CA CB GLU sing 216 n n 
CA HA GLU sing 217 n n 
C O GLU doub 218 n n 
C OXT GLU sing 219 n n 
CB CG GLU sing 220 n n 
CB HB2 GLU sing 221 n n 
CB HB3 GLU sing 222 n n 
CG CD GLU sing 223 n n 
CG HG2 GLU sing 224 n n 
CG HG3 GLU sing 225 n n 
CD OE1 GLU doub 226 n n 
CD OE2 GLU sing 227 n n 
OE2 HE2 GLU sing 228 n n 
OXT HXT GLU sing 229 n n 
#
_atom_sites.entry_id                     8JD5 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 7 HZR 2 1 901 901 HZR JNJ . 
H 8 GLU 2 1 902 902 GLU GLA . 
I 9 CLR 2 1 903 904 CLR CLR . 
J 10 PEF 2 1 904 1006 PEF LIP . 
K 11 NAG 2 1 905 2001 NAG NAG . 
L 9 CLR 2 1 906 2101 CLR CLR . 
M 9 CLR 2 1 907 2201 CLR CLR . 
N 9 CLR 4 1 1001 903 CLR CLR . 
O 8 GLU 4 1 1002 901 GLU GLA . 
P 11 NAG 4 1 1003 2001 NAG NAG . 
Q 12 BQI 4 1 1004 2101 BQI ADX . 
R 9 CLR 4 1 1005 2102 CLR CLR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N GLU . . . H 8 177.71 179.993 276.819 1 56.61 ? N GLU 902 2 1 
HETATM 2 C CA GLU . . . H 8 178.091 181.385 276.669 1 56.61 ? CA GLU 902 2 1 
HETATM 3 C C GLU . . . H 8 179.47 181.604 277.287 1 56.61 ? C GLU 902 2 1 
HETATM 4 O O GLU . . . H 8 179.928 182.77 277.406 1 56.61 -1 O GLU 902 2 1 
HETATM 5 C CB GLU . . . H 8 177.072 182.27 277.382 1 56.61 ? CB GLU 902 2 1 
HETATM 6 C CG GLU . . . H 8 176.534 181.612 278.649 1 56.61 ? CG GLU 902 2 1 
HETATM 7 C CD GLU . . . H 8 175.483 182.469 279.351 1 56.61 ? CD GLU 902 2 1 
HETATM 8 O OE1 GLU . . . H 8 174.259 182.239 279.168 1 56.61 ? OE1 GLU 902 2 1 
HETATM 9 O OE2 GLU . . . H 8 175.841 183.404 280.115 1 56.61 -1 OE2 GLU 902 2 1 
HETATM 10 O OXT GLU . . . H 8 180.147 180.617 277.677 1 56.61 ? OXT GLU 902 2 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           10 
#