data_8JDE # _model_server_result.job_id MML4wTpaDCa655tC3fwWJg _model_server_result.datetime_utc '2024-12-17 10:41:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jde # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 8JDE # _exptl.entry_id 8JDE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 90.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LACTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JDE _cell.length_a 82.124 _cell.length_b 102.403 _cell.length_c 123.432 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JDE _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 385 A HIS 398 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc2 A NE2 HIS 392 A HIS 405 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc3 A OE2 GLU 429 A GLU 442 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc4 B O4 FAD . A FAD 501 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc5 C MN MN . A MN 502 1_555 D OHN LAC . A LAC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc6 C MN MN . A MN 502 1_555 D O LAC . A LAC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? # _chem_comp.formula 'C3 H6 O3' _chem_comp.formula_weight 90.078 _chem_comp.id LAC _chem_comp.mon_nstd_flag . _chem_comp.name 'LACTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C CA LAC sing 264 n n C O LAC doub 265 n n C OXT LAC sing 266 n n CA CB LAC sing 267 n n CA OHN LAC sing 268 n n CA HA LAC sing 269 n n CB HB1 LAC sing 270 n n CB HB2 LAC sing 271 n n CB HB3 LAC sing 272 n n OHN H LAC sing 273 n n OXT HXT LAC sing 274 n n # _atom_sites.entry_id 8JDE _atom_sites.fract_transf_matrix[1][1] 0.012177 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009765 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008102 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 501 1 FAD FAD . C 3 MN A 1 502 1 MN MN . D 4 LAC A 1 503 1 LAC LAC . E 5 HOH A 1 601 127 HOH HOH . E 5 HOH A 2 602 212 HOH HOH . E 5 HOH A 3 603 1 HOH HOH . E 5 HOH A 4 604 63 HOH HOH . E 5 HOH A 5 605 81 HOH HOH . E 5 HOH A 6 606 294 HOH HOH . E 5 HOH A 7 607 222 HOH HOH . E 5 HOH A 8 608 84 HOH HOH . E 5 HOH A 9 609 208 HOH HOH . E 5 HOH A 10 610 154 HOH HOH . E 5 HOH A 11 611 237 HOH HOH . E 5 HOH A 12 612 135 HOH HOH . E 5 HOH A 13 613 10 HOH HOH . E 5 HOH A 14 614 125 HOH HOH . E 5 HOH A 15 615 112 HOH HOH . E 5 HOH A 16 616 98 HOH HOH . E 5 HOH A 17 617 130 HOH HOH . E 5 HOH A 18 618 18 HOH HOH . E 5 HOH A 19 619 225 HOH HOH . E 5 HOH A 20 620 36 HOH HOH . E 5 HOH A 21 621 115 HOH HOH . E 5 HOH A 22 622 94 HOH HOH . E 5 HOH A 23 623 139 HOH HOH . E 5 HOH A 24 624 38 HOH HOH . E 5 HOH A 25 625 4 HOH HOH . E 5 HOH A 26 626 27 HOH HOH . E 5 HOH A 27 627 90 HOH HOH . E 5 HOH A 28 628 278 HOH HOH . E 5 HOH A 29 629 132 HOH HOH . E 5 HOH A 30 630 62 HOH HOH . E 5 HOH A 31 631 52 HOH HOH . E 5 HOH A 32 632 2 HOH HOH . E 5 HOH A 33 633 29 HOH HOH . E 5 HOH A 34 634 153 HOH HOH . E 5 HOH A 35 635 150 HOH HOH . E 5 HOH A 36 636 232 HOH HOH . E 5 HOH A 37 637 11 HOH HOH . E 5 HOH A 38 638 186 HOH HOH . E 5 HOH A 39 639 8 HOH HOH . E 5 HOH A 40 640 71 HOH HOH . E 5 HOH A 41 641 177 HOH HOH . E 5 HOH A 42 642 5 HOH HOH . E 5 HOH A 43 643 14 HOH HOH . E 5 HOH A 44 644 51 HOH HOH . E 5 HOH A 45 645 157 HOH HOH . E 5 HOH A 46 646 114 HOH HOH . E 5 HOH A 47 647 199 HOH HOH . E 5 HOH A 48 648 117 HOH HOH . E 5 HOH A 49 649 165 HOH HOH . E 5 HOH A 50 650 173 HOH HOH . E 5 HOH A 51 651 3 HOH HOH . E 5 HOH A 52 652 226 HOH HOH . E 5 HOH A 53 653 122 HOH HOH . E 5 HOH A 54 654 138 HOH HOH . E 5 HOH A 55 655 102 HOH HOH . E 5 HOH A 56 656 110 HOH HOH . E 5 HOH A 57 657 70 HOH HOH . E 5 HOH A 58 658 73 HOH HOH . E 5 HOH A 59 659 111 HOH HOH . E 5 HOH A 60 660 116 HOH HOH . E 5 HOH A 61 661 50 HOH HOH . E 5 HOH A 62 662 32 HOH HOH . E 5 HOH A 63 663 191 HOH HOH . E 5 HOH A 64 664 28 HOH HOH . E 5 HOH A 65 665 205 HOH HOH . E 5 HOH A 66 666 155 HOH HOH . E 5 HOH A 67 667 22 HOH HOH . E 5 HOH A 68 668 35 HOH HOH . E 5 HOH A 69 669 53 HOH HOH . E 5 HOH A 70 670 42 HOH HOH . E 5 HOH A 71 671 31 HOH HOH . E 5 HOH A 72 672 66 HOH HOH . E 5 HOH A 73 673 277 HOH HOH . E 5 HOH A 74 674 99 HOH HOH . E 5 HOH A 75 675 69 HOH HOH . E 5 HOH A 76 676 75 HOH HOH . E 5 HOH A 77 677 41 HOH HOH . E 5 HOH A 78 678 30 HOH HOH . E 5 HOH A 79 679 21 HOH HOH . E 5 HOH A 80 680 16 HOH HOH . E 5 HOH A 81 681 151 HOH HOH . E 5 HOH A 82 682 61 HOH HOH . E 5 HOH A 83 683 87 HOH HOH . E 5 HOH A 84 684 59 HOH HOH . E 5 HOH A 85 685 104 HOH HOH . E 5 HOH A 86 686 291 HOH HOH . E 5 HOH A 87 687 20 HOH HOH . E 5 HOH A 88 688 85 HOH HOH . E 5 HOH A 89 689 34 HOH HOH . E 5 HOH A 90 690 161 HOH HOH . E 5 HOH A 91 691 77 HOH HOH . E 5 HOH A 92 692 137 HOH HOH . E 5 HOH A 93 693 9 HOH HOH . E 5 HOH A 94 694 170 HOH HOH . E 5 HOH A 95 695 113 HOH HOH . E 5 HOH A 96 696 88 HOH HOH . E 5 HOH A 97 697 101 HOH HOH . E 5 HOH A 98 698 37 HOH HOH . E 5 HOH A 99 699 45 HOH HOH . E 5 HOH A 100 700 55 HOH HOH . E 5 HOH A 101 701 194 HOH HOH . E 5 HOH A 102 702 227 HOH HOH . E 5 HOH A 103 703 204 HOH HOH . E 5 HOH A 104 704 230 HOH HOH . E 5 HOH A 105 705 156 HOH HOH . E 5 HOH A 106 706 105 HOH HOH . E 5 HOH A 107 707 207 HOH HOH . E 5 HOH A 108 708 12 HOH HOH . E 5 HOH A 109 709 126 HOH HOH . E 5 HOH A 110 710 78 HOH HOH . E 5 HOH A 111 711 17 HOH HOH . E 5 HOH A 112 712 80 HOH HOH . E 5 HOH A 113 713 152 HOH HOH . E 5 HOH A 114 714 166 HOH HOH . E 5 HOH A 115 715 26 HOH HOH . E 5 HOH A 116 716 134 HOH HOH . E 5 HOH A 117 717 143 HOH HOH . E 5 HOH A 118 718 292 HOH HOH . E 5 HOH A 119 719 96 HOH HOH . E 5 HOH A 120 720 25 HOH HOH . E 5 HOH A 121 721 83 HOH HOH . E 5 HOH A 122 722 211 HOH HOH . E 5 HOH A 123 723 58 HOH HOH . E 5 HOH A 124 724 178 HOH HOH . E 5 HOH A 125 725 103 HOH HOH . E 5 HOH A 126 726 188 HOH HOH . E 5 HOH A 127 727 43 HOH HOH . E 5 HOH A 128 728 223 HOH HOH . E 5 HOH A 129 729 76 HOH HOH . E 5 HOH A 130 730 57 HOH HOH . E 5 HOH A 131 731 128 HOH HOH . E 5 HOH A 132 732 48 HOH HOH . E 5 HOH A 133 733 54 HOH HOH . E 5 HOH A 134 734 124 HOH HOH . E 5 HOH A 135 735 196 HOH HOH . E 5 HOH A 136 736 65 HOH HOH . E 5 HOH A 137 737 180 HOH HOH . E 5 HOH A 138 738 92 HOH HOH . E 5 HOH A 139 739 133 HOH HOH . E 5 HOH A 140 740 221 HOH HOH . E 5 HOH A 141 741 46 HOH HOH . E 5 HOH A 142 742 129 HOH HOH . E 5 HOH A 143 743 193 HOH HOH . E 5 HOH A 144 744 164 HOH HOH . E 5 HOH A 145 745 93 HOH HOH . E 5 HOH A 146 746 142 HOH HOH . E 5 HOH A 147 747 247 HOH HOH . E 5 HOH A 148 748 33 HOH HOH . E 5 HOH A 149 749 121 HOH HOH . E 5 HOH A 150 750 86 HOH HOH . E 5 HOH A 151 751 184 HOH HOH . E 5 HOH A 152 752 13 HOH HOH . E 5 HOH A 153 753 123 HOH HOH . E 5 HOH A 154 754 24 HOH HOH . E 5 HOH A 155 755 107 HOH HOH . E 5 HOH A 156 756 168 HOH HOH . E 5 HOH A 157 757 148 HOH HOH . E 5 HOH A 158 758 68 HOH HOH . E 5 HOH A 159 759 273 HOH HOH . E 5 HOH A 160 760 136 HOH HOH . E 5 HOH A 161 761 159 HOH HOH . E 5 HOH A 162 762 185 HOH HOH . E 5 HOH A 163 763 209 HOH HOH . E 5 HOH A 164 764 245 HOH HOH . E 5 HOH A 165 765 147 HOH HOH . E 5 HOH A 166 766 239 HOH HOH . E 5 HOH A 167 767 23 HOH HOH . E 5 HOH A 168 768 7 HOH HOH . E 5 HOH A 169 769 163 HOH HOH . E 5 HOH A 170 770 49 HOH HOH . E 5 HOH A 171 771 106 HOH HOH . E 5 HOH A 172 772 15 HOH HOH . E 5 HOH A 173 773 220 HOH HOH . E 5 HOH A 174 774 149 HOH HOH . E 5 HOH A 175 775 19 HOH HOH . E 5 HOH A 176 776 56 HOH HOH . E 5 HOH A 177 777 67 HOH HOH . E 5 HOH A 178 778 44 HOH HOH . E 5 HOH A 179 779 181 HOH HOH . E 5 HOH A 180 780 108 HOH HOH . E 5 HOH A 181 781 141 HOH HOH . E 5 HOH A 182 782 215 HOH HOH . E 5 HOH A 183 783 195 HOH HOH . E 5 HOH A 184 784 192 HOH HOH . E 5 HOH A 185 785 79 HOH HOH . E 5 HOH A 186 786 270 HOH HOH . E 5 HOH A 187 787 190 HOH HOH . E 5 HOH A 188 788 64 HOH HOH . E 5 HOH A 189 789 89 HOH HOH . E 5 HOH A 190 790 250 HOH HOH . E 5 HOH A 191 791 213 HOH HOH . E 5 HOH A 192 792 243 HOH HOH . E 5 HOH A 193 793 6 HOH HOH . E 5 HOH A 194 794 158 HOH HOH . E 5 HOH A 195 795 203 HOH HOH . E 5 HOH A 196 796 198 HOH HOH . E 5 HOH A 197 797 82 HOH HOH . E 5 HOH A 198 798 244 HOH HOH . E 5 HOH A 199 799 60 HOH HOH . E 5 HOH A 200 800 224 HOH HOH . E 5 HOH A 201 801 290 HOH HOH . E 5 HOH A 202 802 95 HOH HOH . E 5 HOH A 203 803 144 HOH HOH . E 5 HOH A 204 804 183 HOH HOH . E 5 HOH A 205 805 172 HOH HOH . E 5 HOH A 206 806 259 HOH HOH . E 5 HOH A 207 807 282 HOH HOH . E 5 HOH A 208 808 262 HOH HOH . E 5 HOH A 209 809 74 HOH HOH . E 5 HOH A 210 810 240 HOH HOH . E 5 HOH A 211 811 162 HOH HOH . E 5 HOH A 212 812 47 HOH HOH . E 5 HOH A 213 813 182 HOH HOH . E 5 HOH A 214 814 169 HOH HOH . E 5 HOH A 215 815 206 HOH HOH . E 5 HOH A 216 816 197 HOH HOH . E 5 HOH A 217 817 268 HOH HOH . E 5 HOH A 218 818 231 HOH HOH . E 5 HOH A 219 819 120 HOH HOH . E 5 HOH A 220 820 289 HOH HOH . E 5 HOH A 221 821 97 HOH HOH . E 5 HOH A 222 822 272 HOH HOH . E 5 HOH A 223 823 214 HOH HOH . E 5 HOH A 224 824 91 HOH HOH . E 5 HOH A 225 825 40 HOH HOH . E 5 HOH A 226 826 202 HOH HOH . E 5 HOH A 227 827 276 HOH HOH . E 5 HOH A 228 828 238 HOH HOH . E 5 HOH A 229 829 216 HOH HOH . E 5 HOH A 230 830 72 HOH HOH . E 5 HOH A 231 831 265 HOH HOH . E 5 HOH A 232 832 234 HOH HOH . E 5 HOH A 233 833 235 HOH HOH . E 5 HOH A 234 834 118 HOH HOH . E 5 HOH A 235 835 274 HOH HOH . E 5 HOH A 236 836 267 HOH HOH . E 5 HOH A 237 837 275 HOH HOH . E 5 HOH A 238 838 210 HOH HOH . E 5 HOH A 239 839 187 HOH HOH . E 5 HOH A 240 840 252 HOH HOH . E 5 HOH A 241 841 140 HOH HOH . E 5 HOH A 242 842 285 HOH HOH . E 5 HOH A 243 843 248 HOH HOH . E 5 HOH A 244 844 119 HOH HOH . E 5 HOH A 245 845 293 HOH HOH . E 5 HOH A 246 846 174 HOH HOH . E 5 HOH A 247 847 100 HOH HOH . E 5 HOH A 248 848 269 HOH HOH . E 5 HOH A 249 849 146 HOH HOH . E 5 HOH A 250 850 176 HOH HOH . E 5 HOH A 251 851 287 HOH HOH . E 5 HOH A 252 852 167 HOH HOH . E 5 HOH A 253 853 279 HOH HOH . E 5 HOH A 254 854 189 HOH HOH . E 5 HOH A 255 855 171 HOH HOH . E 5 HOH A 256 856 160 HOH HOH . E 5 HOH A 257 857 217 HOH HOH . E 5 HOH A 258 858 200 HOH HOH . E 5 HOH A 259 859 251 HOH HOH . E 5 HOH A 260 860 242 HOH HOH . E 5 HOH A 261 861 241 HOH HOH . E 5 HOH A 262 862 256 HOH HOH . E 5 HOH A 263 863 229 HOH HOH . E 5 HOH A 264 864 286 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C LAC . . . D 4 42.81 29.97 31.192 0.85 30.11 ? C LAC 503 A 1 HETATM 2 C CA LAC . . . D 4 42.852 29.831 29.766 0.85 30.42 ? CA LAC 503 A 1 HETATM 3 C CB LAC . . . D 4 42.038 28.634 29.331 0.85 35.26 ? CB LAC 503 A 1 HETATM 4 O O LAC . . . D 4 42.225 30.97 31.619 0.85 24.69 ? O LAC 503 A 1 HETATM 5 O OHN LAC . . . D 4 42.439 31.135 29.377 0.85 28.54 ? OHN LAC 503 A 1 HETATM 6 O OXT LAC . . . D 4 43.353 29.082 31.89 0.85 33.93 ? OXT LAC 503 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #