data_8JDS # _model_server_result.job_id 28hVpbaOAn7plxRkLgysVg _model_server_result.datetime_utc '2024-11-02 19:36:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jds # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 8JDS # _exptl.entry_id 8JDS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JDS _cell.length_a 81.341 _cell.length_b 102.74 _cell.length_c 122.292 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JDS _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 385 A HIS 398 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc2 A NE2 HIS 392 A HIS 405 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc3 A OE2 GLU 429 A GLU 442 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc4 B O4 FAD . A FAD 501 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc5 C MN MN . A MN 502 1_555 D O PYR . A PYR 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc6 C MN MN . A MN 502 1_555 D O3 PYR . A PYR 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8JDS _atom_sites.fract_transf_matrix[1][1] 0.012294 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009733 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008177 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 501 1 FAD FAD . C 3 MN A 1 502 1 MN MN . D 4 PYR A 1 503 1 PYR PYR . E 5 HOH A 1 601 49 HOH HOH . E 5 HOH A 2 602 236 HOH HOH . E 5 HOH A 3 603 295 HOH HOH . E 5 HOH A 4 604 64 HOH HOH . E 5 HOH A 5 605 174 HOH HOH . E 5 HOH A 6 606 196 HOH HOH . E 5 HOH A 7 607 261 HOH HOH . E 5 HOH A 8 608 127 HOH HOH . E 5 HOH A 9 609 85 HOH HOH . E 5 HOH A 10 610 220 HOH HOH . E 5 HOH A 11 611 1 HOH HOH . E 5 HOH A 12 612 161 HOH HOH . E 5 HOH A 13 613 190 HOH HOH . E 5 HOH A 14 614 126 HOH HOH . E 5 HOH A 15 615 269 HOH HOH . E 5 HOH A 16 616 263 HOH HOH . E 5 HOH A 17 617 88 HOH HOH . E 5 HOH A 18 618 155 HOH HOH . E 5 HOH A 19 619 180 HOH HOH . E 5 HOH A 20 620 201 HOH HOH . E 5 HOH A 21 621 121 HOH HOH . E 5 HOH A 22 622 149 HOH HOH . E 5 HOH A 23 623 158 HOH HOH . E 5 HOH A 24 624 3 HOH HOH . E 5 HOH A 25 625 96 HOH HOH . E 5 HOH A 26 626 214 HOH HOH . E 5 HOH A 27 627 154 HOH HOH . E 5 HOH A 28 628 40 HOH HOH . E 5 HOH A 29 629 81 HOH HOH . E 5 HOH A 30 630 79 HOH HOH . E 5 HOH A 31 631 4 HOH HOH . E 5 HOH A 32 632 198 HOH HOH . E 5 HOH A 33 633 62 HOH HOH . E 5 HOH A 34 634 13 HOH HOH . E 5 HOH A 35 635 240 HOH HOH . E 5 HOH A 36 636 188 HOH HOH . E 5 HOH A 37 637 110 HOH HOH . E 5 HOH A 38 638 14 HOH HOH . E 5 HOH A 39 639 173 HOH HOH . E 5 HOH A 40 640 98 HOH HOH . E 5 HOH A 41 641 63 HOH HOH . E 5 HOH A 42 642 123 HOH HOH . E 5 HOH A 43 643 148 HOH HOH . E 5 HOH A 44 644 107 HOH HOH . E 5 HOH A 45 645 104 HOH HOH . E 5 HOH A 46 646 9 HOH HOH . E 5 HOH A 47 647 103 HOH HOH . E 5 HOH A 48 648 2 HOH HOH . E 5 HOH A 49 649 25 HOH HOH . E 5 HOH A 50 650 91 HOH HOH . E 5 HOH A 51 651 114 HOH HOH . E 5 HOH A 52 652 146 HOH HOH . E 5 HOH A 53 653 7 HOH HOH . E 5 HOH A 54 654 46 HOH HOH . E 5 HOH A 55 655 129 HOH HOH . E 5 HOH A 56 656 16 HOH HOH . E 5 HOH A 57 657 89 HOH HOH . E 5 HOH A 58 658 113 HOH HOH . E 5 HOH A 59 659 53 HOH HOH . E 5 HOH A 60 660 203 HOH HOH . E 5 HOH A 61 661 50 HOH HOH . E 5 HOH A 62 662 99 HOH HOH . E 5 HOH A 63 663 205 HOH HOH . E 5 HOH A 64 664 152 HOH HOH . E 5 HOH A 65 665 24 HOH HOH . E 5 HOH A 66 666 6 HOH HOH . E 5 HOH A 67 667 219 HOH HOH . E 5 HOH A 68 668 262 HOH HOH . E 5 HOH A 69 669 237 HOH HOH . E 5 HOH A 70 670 77 HOH HOH . E 5 HOH A 71 671 100 HOH HOH . E 5 HOH A 72 672 92 HOH HOH . E 5 HOH A 73 673 179 HOH HOH . E 5 HOH A 74 674 30 HOH HOH . E 5 HOH A 75 675 258 HOH HOH . E 5 HOH A 76 676 290 HOH HOH . E 5 HOH A 77 677 194 HOH HOH . E 5 HOH A 78 678 207 HOH HOH . E 5 HOH A 79 679 10 HOH HOH . E 5 HOH A 80 680 254 HOH HOH . E 5 HOH A 81 681 193 HOH HOH . E 5 HOH A 82 682 227 HOH HOH . E 5 HOH A 83 683 80 HOH HOH . E 5 HOH A 84 684 84 HOH HOH . E 5 HOH A 85 685 73 HOH HOH . E 5 HOH A 86 686 34 HOH HOH . E 5 HOH A 87 687 137 HOH HOH . E 5 HOH A 88 688 54 HOH HOH . E 5 HOH A 89 689 208 HOH HOH . E 5 HOH A 90 690 42 HOH HOH . E 5 HOH A 91 691 288 HOH HOH . E 5 HOH A 92 692 44 HOH HOH . E 5 HOH A 93 693 61 HOH HOH . E 5 HOH A 94 694 139 HOH HOH . E 5 HOH A 95 695 135 HOH HOH . E 5 HOH A 96 696 142 HOH HOH . E 5 HOH A 97 697 147 HOH HOH . E 5 HOH A 98 698 125 HOH HOH . E 5 HOH A 99 699 93 HOH HOH . E 5 HOH A 100 700 36 HOH HOH . E 5 HOH A 101 701 29 HOH HOH . E 5 HOH A 102 702 21 HOH HOH . E 5 HOH A 103 703 235 HOH HOH . E 5 HOH A 104 704 12 HOH HOH . E 5 HOH A 105 705 19 HOH HOH . E 5 HOH A 106 706 144 HOH HOH . E 5 HOH A 107 707 215 HOH HOH . E 5 HOH A 108 708 119 HOH HOH . E 5 HOH A 109 709 108 HOH HOH . E 5 HOH A 110 710 140 HOH HOH . E 5 HOH A 111 711 11 HOH HOH . E 5 HOH A 112 712 39 HOH HOH . E 5 HOH A 113 713 256 HOH HOH . E 5 HOH A 114 714 141 HOH HOH . E 5 HOH A 115 715 87 HOH HOH . E 5 HOH A 116 716 242 HOH HOH . E 5 HOH A 117 717 23 HOH HOH . E 5 HOH A 118 718 26 HOH HOH . E 5 HOH A 119 719 132 HOH HOH . E 5 HOH A 120 720 118 HOH HOH . E 5 HOH A 121 721 33 HOH HOH . E 5 HOH A 122 722 211 HOH HOH . E 5 HOH A 123 723 56 HOH HOH . E 5 HOH A 124 724 175 HOH HOH . E 5 HOH A 125 725 252 HOH HOH . E 5 HOH A 126 726 128 HOH HOH . E 5 HOH A 127 727 22 HOH HOH . E 5 HOH A 128 728 115 HOH HOH . E 5 HOH A 129 729 192 HOH HOH . E 5 HOH A 130 730 181 HOH HOH . E 5 HOH A 131 731 75 HOH HOH . E 5 HOH A 132 732 172 HOH HOH . E 5 HOH A 133 733 71 HOH HOH . E 5 HOH A 134 734 55 HOH HOH . E 5 HOH A 135 735 143 HOH HOH . E 5 HOH A 136 736 32 HOH HOH . E 5 HOH A 137 737 31 HOH HOH . E 5 HOH A 138 738 225 HOH HOH . E 5 HOH A 139 739 170 HOH HOH . E 5 HOH A 140 740 221 HOH HOH . E 5 HOH A 141 741 41 HOH HOH . E 5 HOH A 142 742 130 HOH HOH . E 5 HOH A 143 743 122 HOH HOH . E 5 HOH A 144 744 67 HOH HOH . E 5 HOH A 145 745 60 HOH HOH . E 5 HOH A 146 746 69 HOH HOH . E 5 HOH A 147 747 230 HOH HOH . E 5 HOH A 148 748 18 HOH HOH . E 5 HOH A 149 749 134 HOH HOH . E 5 HOH A 150 750 286 HOH HOH . E 5 HOH A 151 751 166 HOH HOH . E 5 HOH A 152 752 59 HOH HOH . E 5 HOH A 153 753 202 HOH HOH . E 5 HOH A 154 754 138 HOH HOH . E 5 HOH A 155 755 150 HOH HOH . E 5 HOH A 156 756 120 HOH HOH . E 5 HOH A 157 757 27 HOH HOH . E 5 HOH A 158 758 105 HOH HOH . E 5 HOH A 159 759 45 HOH HOH . E 5 HOH A 160 760 164 HOH HOH . E 5 HOH A 161 761 178 HOH HOH . E 5 HOH A 162 762 106 HOH HOH . E 5 HOH A 163 763 153 HOH HOH . E 5 HOH A 164 764 28 HOH HOH . E 5 HOH A 165 765 177 HOH HOH . E 5 HOH A 166 766 124 HOH HOH . E 5 HOH A 167 767 58 HOH HOH . E 5 HOH A 168 768 224 HOH HOH . E 5 HOH A 169 769 171 HOH HOH . E 5 HOH A 170 770 275 HOH HOH . E 5 HOH A 171 771 157 HOH HOH . E 5 HOH A 172 772 76 HOH HOH . E 5 HOH A 173 773 279 HOH HOH . E 5 HOH A 174 774 17 HOH HOH . E 5 HOH A 175 775 272 HOH HOH . E 5 HOH A 176 776 83 HOH HOH . E 5 HOH A 177 777 228 HOH HOH . E 5 HOH A 178 778 15 HOH HOH . E 5 HOH A 179 779 20 HOH HOH . E 5 HOH A 180 780 191 HOH HOH . E 5 HOH A 181 781 195 HOH HOH . E 5 HOH A 182 782 169 HOH HOH . E 5 HOH A 183 783 111 HOH HOH . E 5 HOH A 184 784 162 HOH HOH . E 5 HOH A 185 785 278 HOH HOH . E 5 HOH A 186 786 176 HOH HOH . E 5 HOH A 187 787 101 HOH HOH . E 5 HOH A 188 788 8 HOH HOH . E 5 HOH A 189 789 48 HOH HOH . E 5 HOH A 190 790 102 HOH HOH . E 5 HOH A 191 791 226 HOH HOH . E 5 HOH A 192 792 184 HOH HOH . E 5 HOH A 193 793 66 HOH HOH . E 5 HOH A 194 794 117 HOH HOH . E 5 HOH A 195 795 51 HOH HOH . E 5 HOH A 196 796 43 HOH HOH . E 5 HOH A 197 797 229 HOH HOH . E 5 HOH A 198 798 97 HOH HOH . E 5 HOH A 199 799 185 HOH HOH . E 5 HOH A 200 800 282 HOH HOH . E 5 HOH A 201 801 223 HOH HOH . E 5 HOH A 202 802 182 HOH HOH . E 5 HOH A 203 803 200 HOH HOH . E 5 HOH A 204 804 168 HOH HOH . E 5 HOH A 205 805 94 HOH HOH . E 5 HOH A 206 806 70 HOH HOH . E 5 HOH A 207 807 37 HOH HOH . E 5 HOH A 208 808 95 HOH HOH . E 5 HOH A 209 809 74 HOH HOH . E 5 HOH A 210 810 233 HOH HOH . E 5 HOH A 211 811 163 HOH HOH . E 5 HOH A 212 812 160 HOH HOH . E 5 HOH A 213 813 52 HOH HOH . E 5 HOH A 214 814 57 HOH HOH . E 5 HOH A 215 815 217 HOH HOH . E 5 HOH A 216 816 183 HOH HOH . E 5 HOH A 217 817 47 HOH HOH . E 5 HOH A 218 818 133 HOH HOH . E 5 HOH A 219 819 78 HOH HOH . E 5 HOH A 220 820 109 HOH HOH . E 5 HOH A 221 821 187 HOH HOH . E 5 HOH A 222 822 244 HOH HOH . E 5 HOH A 223 823 247 HOH HOH . E 5 HOH A 224 824 231 HOH HOH . E 5 HOH A 225 825 72 HOH HOH . E 5 HOH A 226 826 284 HOH HOH . E 5 HOH A 227 827 268 HOH HOH . E 5 HOH A 228 828 270 HOH HOH . E 5 HOH A 229 829 136 HOH HOH . E 5 HOH A 230 830 238 HOH HOH . E 5 HOH A 231 831 65 HOH HOH . E 5 HOH A 232 832 245 HOH HOH . E 5 HOH A 233 833 5 HOH HOH . E 5 HOH A 234 834 260 HOH HOH . E 5 HOH A 235 835 156 HOH HOH . E 5 HOH A 236 836 112 HOH HOH . E 5 HOH A 237 837 213 HOH HOH . E 5 HOH A 238 838 116 HOH HOH . E 5 HOH A 239 839 271 HOH HOH . E 5 HOH A 240 840 216 HOH HOH . E 5 HOH A 241 841 151 HOH HOH . E 5 HOH A 242 842 232 HOH HOH . E 5 HOH A 243 843 293 HOH HOH . E 5 HOH A 244 844 131 HOH HOH . E 5 HOH A 245 845 248 HOH HOH . E 5 HOH A 246 846 241 HOH HOH . E 5 HOH A 247 847 68 HOH HOH . E 5 HOH A 248 848 276 HOH HOH . E 5 HOH A 249 849 291 HOH HOH . E 5 HOH A 250 850 234 HOH HOH . E 5 HOH A 251 851 251 HOH HOH . E 5 HOH A 252 852 38 HOH HOH . E 5 HOH A 253 853 266 HOH HOH . E 5 HOH A 254 854 250 HOH HOH . E 5 HOH A 255 855 206 HOH HOH . E 5 HOH A 256 856 209 HOH HOH . E 5 HOH A 257 857 145 HOH HOH . E 5 HOH A 258 858 35 HOH HOH . E 5 HOH A 259 859 199 HOH HOH . E 5 HOH A 260 860 218 HOH HOH . E 5 HOH A 261 861 243 HOH HOH . E 5 HOH A 262 862 294 HOH HOH . E 5 HOH A 263 863 292 HOH HOH . E 5 HOH A 264 864 239 HOH HOH . E 5 HOH A 265 865 283 HOH HOH . E 5 HOH A 266 866 204 HOH HOH . E 5 HOH A 267 867 246 HOH HOH . E 5 HOH A 268 868 86 HOH HOH . E 5 HOH A 269 869 90 HOH HOH . E 5 HOH A 270 870 189 HOH HOH . E 5 HOH A 271 871 267 HOH HOH . E 5 HOH A 272 872 159 HOH HOH . E 5 HOH A 273 873 277 HOH HOH . E 5 HOH A 274 874 296 HOH HOH . E 5 HOH A 275 875 222 HOH HOH . E 5 HOH A 276 876 82 HOH HOH . E 5 HOH A 277 877 197 HOH HOH . E 5 HOH A 278 878 285 HOH HOH . E 5 HOH A 279 879 165 HOH HOH . E 5 HOH A 280 880 274 HOH HOH . E 5 HOH A 281 881 257 HOH HOH . E 5 HOH A 282 882 212 HOH HOH . E 5 HOH A 283 883 273 HOH HOH . E 5 HOH A 284 884 287 HOH HOH . E 5 HOH A 285 885 253 HOH HOH . E 5 HOH A 286 886 259 HOH HOH . E 5 HOH A 287 887 289 HOH HOH . E 5 HOH A 288 888 280 HOH HOH . E 5 HOH A 289 889 186 HOH HOH . E 5 HOH A 290 890 210 HOH HOH . E 5 HOH A 291 891 167 HOH HOH . E 5 HOH A 292 892 249 HOH HOH . E 5 HOH A 293 893 255 HOH HOH . E 5 HOH A 294 894 265 HOH HOH . E 5 HOH A 295 895 264 HOH HOH . E 5 HOH A 296 896 281 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 41.532 _atom_site.Cartn_y 32.899 _atom_site.Cartn_z 30.573 _atom_site.occupancy 0.71 _atom_site.B_iso_or_equiv 26.45 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #