data_8JDV
#
_model_server_result.job_id            hLBjL50ouPoKsYnOJNX07g 
_model_server_result.datetime_utc      '2024-11-02 19:25:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jdv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    8JDV 
#
_exptl.entry_id    8JDV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8JDV 
_cell.length_a            82.782 
_cell.length_b            101.403 
_cell.length_c            124.58 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JDV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 385 A HIS 398 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc2 A NE2 HIS 392 A HIS 405 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc3 A OE2 GLU 429 A GLU 442 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc4 B O4 FAD . A FAD 501 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? 
metalc ? metalc5 C MN MN . A MN 502 1_555 D O2 7N5 . A 7N5 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc6 C MN MN . A MN 502 1_555 D O1A 7N5 . A 7N5 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8JDV 
_atom_sites.fract_transf_matrix[1][1]    0.01208 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009862 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008027 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FAD A 1 501 501 FAD FAD . 
C 3 MN A 1 502 502 MN MN . 
D 4 7N5 A 1 503 503 7N5 DRG . 
E 5 HOH A 1 601 72 HOH HOH . 
E 5 HOH A 2 602 224 HOH HOH . 
E 5 HOH A 3 603 116 HOH HOH . 
E 5 HOH A 4 604 42 HOH HOH . 
E 5 HOH A 5 605 196 HOH HOH . 
E 5 HOH A 6 606 44 HOH HOH . 
E 5 HOH A 7 607 7 HOH HOH . 
E 5 HOH A 8 608 117 HOH HOH . 
E 5 HOH A 9 609 100 HOH HOH . 
E 5 HOH A 10 610 141 HOH HOH . 
E 5 HOH A 11 611 214 HOH HOH . 
E 5 HOH A 12 612 248 HOH HOH . 
E 5 HOH A 13 613 235 HOH HOH . 
E 5 HOH A 14 614 230 HOH HOH . 
E 5 HOH A 15 615 56 HOH HOH . 
E 5 HOH A 16 616 1 HOH HOH . 
E 5 HOH A 17 617 194 HOH HOH . 
E 5 HOH A 18 618 67 HOH HOH . 
E 5 HOH A 19 619 120 HOH HOH . 
E 5 HOH A 20 620 241 HOH HOH . 
E 5 HOH A 21 621 119 HOH HOH . 
E 5 HOH A 22 622 211 HOH HOH . 
E 5 HOH A 23 623 36 HOH HOH . 
E 5 HOH A 24 624 237 HOH HOH . 
E 5 HOH A 25 625 238 HOH HOH . 
E 5 HOH A 26 626 160 HOH HOH . 
E 5 HOH A 27 627 59 HOH HOH . 
E 5 HOH A 28 628 25 HOH HOH . 
E 5 HOH A 29 629 81 HOH HOH . 
E 5 HOH A 30 630 111 HOH HOH . 
E 5 HOH A 31 631 197 HOH HOH . 
E 5 HOH A 32 632 161 HOH HOH . 
E 5 HOH A 33 633 23 HOH HOH . 
E 5 HOH A 34 634 2 HOH HOH . 
E 5 HOH A 35 635 187 HOH HOH . 
E 5 HOH A 36 636 105 HOH HOH . 
E 5 HOH A 37 637 114 HOH HOH . 
E 5 HOH A 38 638 115 HOH HOH . 
E 5 HOH A 39 639 61 HOH HOH . 
E 5 HOH A 40 640 3 HOH HOH . 
E 5 HOH A 41 641 69 HOH HOH . 
E 5 HOH A 42 642 233 HOH HOH . 
E 5 HOH A 43 643 189 HOH HOH . 
E 5 HOH A 44 644 218 HOH HOH . 
E 5 HOH A 45 645 37 HOH HOH . 
E 5 HOH A 46 646 175 HOH HOH . 
E 5 HOH A 47 647 167 HOH HOH . 
E 5 HOH A 48 648 11 HOH HOH . 
E 5 HOH A 49 649 58 HOH HOH . 
E 5 HOH A 50 650 4 HOH HOH . 
E 5 HOH A 51 651 18 HOH HOH . 
E 5 HOH A 52 652 101 HOH HOH . 
E 5 HOH A 53 653 82 HOH HOH . 
E 5 HOH A 54 654 34 HOH HOH . 
E 5 HOH A 55 655 10 HOH HOH . 
E 5 HOH A 56 656 41 HOH HOH . 
E 5 HOH A 57 657 205 HOH HOH . 
E 5 HOH A 58 658 39 HOH HOH . 
E 5 HOH A 59 659 184 HOH HOH . 
E 5 HOH A 60 660 221 HOH HOH . 
E 5 HOH A 61 661 163 HOH HOH . 
E 5 HOH A 62 662 178 HOH HOH . 
E 5 HOH A 63 663 157 HOH HOH . 
E 5 HOH A 64 664 6 HOH HOH . 
E 5 HOH A 65 665 71 HOH HOH . 
E 5 HOH A 66 666 60 HOH HOH . 
E 5 HOH A 67 667 53 HOH HOH . 
E 5 HOH A 68 668 134 HOH HOH . 
E 5 HOH A 69 669 113 HOH HOH . 
E 5 HOH A 70 670 179 HOH HOH . 
E 5 HOH A 71 671 5 HOH HOH . 
E 5 HOH A 72 672 80 HOH HOH . 
E 5 HOH A 73 673 204 HOH HOH . 
E 5 HOH A 74 674 83 HOH HOH . 
E 5 HOH A 75 675 130 HOH HOH . 
E 5 HOH A 76 676 62 HOH HOH . 
E 5 HOH A 77 677 220 HOH HOH . 
E 5 HOH A 78 678 32 HOH HOH . 
E 5 HOH A 79 679 15 HOH HOH . 
E 5 HOH A 80 680 31 HOH HOH . 
E 5 HOH A 81 681 14 HOH HOH . 
E 5 HOH A 82 682 91 HOH HOH . 
E 5 HOH A 83 683 143 HOH HOH . 
E 5 HOH A 84 684 162 HOH HOH . 
E 5 HOH A 85 685 19 HOH HOH . 
E 5 HOH A 86 686 35 HOH HOH . 
E 5 HOH A 87 687 122 HOH HOH . 
E 5 HOH A 88 688 64 HOH HOH . 
E 5 HOH A 89 689 108 HOH HOH . 
E 5 HOH A 90 690 112 HOH HOH . 
E 5 HOH A 91 691 99 HOH HOH . 
E 5 HOH A 92 692 188 HOH HOH . 
E 5 HOH A 93 693 151 HOH HOH . 
E 5 HOH A 94 694 199 HOH HOH . 
E 5 HOH A 95 695 228 HOH HOH . 
E 5 HOH A 96 696 210 HOH HOH . 
E 5 HOH A 97 697 20 HOH HOH . 
E 5 HOH A 98 698 102 HOH HOH . 
E 5 HOH A 99 699 127 HOH HOH . 
E 5 HOH A 100 700 138 HOH HOH . 
E 5 HOH A 101 701 30 HOH HOH . 
E 5 HOH A 102 702 132 HOH HOH . 
E 5 HOH A 103 703 219 HOH HOH . 
E 5 HOH A 104 704 49 HOH HOH . 
E 5 HOH A 105 705 97 HOH HOH . 
E 5 HOH A 106 706 66 HOH HOH . 
E 5 HOH A 107 707 166 HOH HOH . 
E 5 HOH A 108 708 9 HOH HOH . 
E 5 HOH A 109 709 40 HOH HOH . 
E 5 HOH A 110 710 27 HOH HOH . 
E 5 HOH A 111 711 48 HOH HOH . 
E 5 HOH A 112 712 171 HOH HOH . 
E 5 HOH A 113 713 17 HOH HOH . 
E 5 HOH A 114 714 26 HOH HOH . 
E 5 HOH A 115 715 118 HOH HOH . 
E 5 HOH A 116 716 88 HOH HOH . 
E 5 HOH A 117 717 227 HOH HOH . 
E 5 HOH A 118 718 13 HOH HOH . 
E 5 HOH A 119 719 74 HOH HOH . 
E 5 HOH A 120 720 95 HOH HOH . 
E 5 HOH A 121 721 45 HOH HOH . 
E 5 HOH A 122 722 77 HOH HOH . 
E 5 HOH A 123 723 250 HOH HOH . 
E 5 HOH A 124 724 16 HOH HOH . 
E 5 HOH A 125 725 176 HOH HOH . 
E 5 HOH A 126 726 70 HOH HOH . 
E 5 HOH A 127 727 142 HOH HOH . 
E 5 HOH A 128 728 65 HOH HOH . 
E 5 HOH A 129 729 22 HOH HOH . 
E 5 HOH A 130 730 55 HOH HOH . 
E 5 HOH A 131 731 146 HOH HOH . 
E 5 HOH A 132 732 104 HOH HOH . 
E 5 HOH A 133 733 181 HOH HOH . 
E 5 HOH A 134 734 159 HOH HOH . 
E 5 HOH A 135 735 21 HOH HOH . 
E 5 HOH A 136 736 79 HOH HOH . 
E 5 HOH A 137 737 24 HOH HOH . 
E 5 HOH A 138 738 90 HOH HOH . 
E 5 HOH A 139 739 94 HOH HOH . 
E 5 HOH A 140 740 54 HOH HOH . 
E 5 HOH A 141 741 139 HOH HOH . 
E 5 HOH A 142 742 125 HOH HOH . 
E 5 HOH A 143 743 234 HOH HOH . 
E 5 HOH A 144 744 246 HOH HOH . 
E 5 HOH A 145 745 123 HOH HOH . 
E 5 HOH A 146 746 240 HOH HOH . 
E 5 HOH A 147 747 152 HOH HOH . 
E 5 HOH A 148 748 12 HOH HOH . 
E 5 HOH A 149 749 63 HOH HOH . 
E 5 HOH A 150 750 47 HOH HOH . 
E 5 HOH A 151 751 149 HOH HOH . 
E 5 HOH A 152 752 177 HOH HOH . 
E 5 HOH A 153 753 93 HOH HOH . 
E 5 HOH A 154 754 107 HOH HOH . 
E 5 HOH A 155 755 51 HOH HOH . 
E 5 HOH A 156 756 212 HOH HOH . 
E 5 HOH A 157 757 43 HOH HOH . 
E 5 HOH A 158 758 89 HOH HOH . 
E 5 HOH A 159 759 68 HOH HOH . 
E 5 HOH A 160 760 172 HOH HOH . 
E 5 HOH A 161 761 75 HOH HOH . 
E 5 HOH A 162 762 96 HOH HOH . 
E 5 HOH A 163 763 50 HOH HOH . 
E 5 HOH A 164 764 216 HOH HOH . 
E 5 HOH A 165 765 192 HOH HOH . 
E 5 HOH A 166 766 185 HOH HOH . 
E 5 HOH A 167 767 147 HOH HOH . 
E 5 HOH A 168 768 86 HOH HOH . 
E 5 HOH A 169 769 135 HOH HOH . 
E 5 HOH A 170 770 150 HOH HOH . 
E 5 HOH A 171 771 28 HOH HOH . 
E 5 HOH A 172 772 170 HOH HOH . 
E 5 HOH A 173 773 38 HOH HOH . 
E 5 HOH A 174 774 29 HOH HOH . 
E 5 HOH A 175 775 129 HOH HOH . 
E 5 HOH A 176 776 76 HOH HOH . 
E 5 HOH A 177 777 110 HOH HOH . 
E 5 HOH A 178 778 78 HOH HOH . 
E 5 HOH A 179 779 198 HOH HOH . 
E 5 HOH A 180 780 85 HOH HOH . 
E 5 HOH A 181 781 109 HOH HOH . 
E 5 HOH A 182 782 203 HOH HOH . 
E 5 HOH A 183 783 46 HOH HOH . 
E 5 HOH A 184 784 33 HOH HOH . 
E 5 HOH A 185 785 169 HOH HOH . 
E 5 HOH A 186 786 52 HOH HOH . 
E 5 HOH A 187 787 126 HOH HOH . 
E 5 HOH A 188 788 207 HOH HOH . 
E 5 HOH A 189 789 140 HOH HOH . 
E 5 HOH A 190 790 92 HOH HOH . 
E 5 HOH A 191 791 73 HOH HOH . 
E 5 HOH A 192 792 165 HOH HOH . 
E 5 HOH A 193 793 154 HOH HOH . 
E 5 HOH A 194 794 121 HOH HOH . 
E 5 HOH A 195 795 164 HOH HOH . 
E 5 HOH A 196 796 155 HOH HOH . 
E 5 HOH A 197 797 223 HOH HOH . 
E 5 HOH A 198 798 144 HOH HOH . 
E 5 HOH A 199 799 180 HOH HOH . 
E 5 HOH A 200 800 173 HOH HOH . 
E 5 HOH A 201 801 239 HOH HOH . 
E 5 HOH A 202 802 148 HOH HOH . 
E 5 HOH A 203 803 183 HOH HOH . 
E 5 HOH A 204 804 8 HOH HOH . 
E 5 HOH A 205 805 57 HOH HOH . 
E 5 HOH A 206 806 158 HOH HOH . 
E 5 HOH A 207 807 174 HOH HOH . 
E 5 HOH A 208 808 98 HOH HOH . 
E 5 HOH A 209 809 195 HOH HOH . 
E 5 HOH A 210 810 103 HOH HOH . 
E 5 HOH A 211 811 201 HOH HOH . 
E 5 HOH A 212 812 202 HOH HOH . 
E 5 HOH A 213 813 191 HOH HOH . 
E 5 HOH A 214 814 231 HOH HOH . 
E 5 HOH A 215 815 213 HOH HOH . 
E 5 HOH A 216 816 225 HOH HOH . 
E 5 HOH A 217 817 136 HOH HOH . 
E 5 HOH A 218 818 168 HOH HOH . 
E 5 HOH A 219 819 137 HOH HOH . 
E 5 HOH A 220 820 87 HOH HOH . 
E 5 HOH A 221 821 206 HOH HOH . 
E 5 HOH A 222 822 128 HOH HOH . 
E 5 HOH A 223 823 200 HOH HOH . 
E 5 HOH A 224 824 145 HOH HOH . 
E 5 HOH A 225 825 244 HOH HOH . 
E 5 HOH A 226 826 131 HOH HOH . 
E 5 HOH A 227 827 232 HOH HOH . 
E 5 HOH A 228 828 251 HOH HOH . 
E 5 HOH A 229 829 209 HOH HOH . 
E 5 HOH A 230 830 236 HOH HOH . 
E 5 HOH A 231 831 247 HOH HOH . 
E 5 HOH A 232 832 229 HOH HOH . 
E 5 HOH A 233 833 186 HOH HOH . 
E 5 HOH A 234 834 215 HOH HOH . 
E 5 HOH A 235 835 242 HOH HOH . 
E 5 HOH A 236 836 208 HOH HOH . 
E 5 HOH A 237 837 84 HOH HOH . 
E 5 HOH A 238 838 153 HOH HOH . 
E 5 HOH A 239 839 249 HOH HOH . 
E 5 HOH A 240 840 243 HOH HOH . 
E 5 HOH A 241 841 156 HOH HOH . 
E 5 HOH A 242 842 106 HOH HOH . 
E 5 HOH A 243 843 190 HOH HOH . 
E 5 HOH A 244 844 124 HOH HOH . 
E 5 HOH A 245 845 222 HOH HOH . 
E 5 HOH A 246 846 193 HOH HOH . 
E 5 HOH A 247 847 217 HOH HOH . 
E 5 HOH A 248 848 133 HOH HOH . 
E 5 HOH A 249 849 226 HOH HOH . 
E 5 HOH A 250 850 245 HOH HOH . 
E 5 HOH A 251 851 182 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               41.753 
_atom_site.Cartn_y               32.17 
_atom_site.Cartn_z               30.532 
_atom_site.occupancy             0.79 
_atom_site.B_iso_or_equiv        17.79 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           502 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           346 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#