data_8JDV # _model_server_result.job_id XLTTqDgG5aMiwtsNKMmA9A _model_server_result.datetime_utc '2024-12-17 10:51:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jdv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 8JDV # _exptl.entry_id 8JDV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 130.142 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-Ketohexanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JDV _cell.length_a 82.782 _cell.length_b 101.403 _cell.length_c 124.58 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JDV _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 385 A HIS 398 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc2 A NE2 HIS 392 A HIS 405 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc3 A OE2 GLU 429 A GLU 442 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc4 B O4 FAD . A FAD 501 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc5 C MN MN . A MN 502 1_555 D O2 7N5 . A 7N5 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc6 C MN MN . A MN 502 1_555 D O1A 7N5 . A 7N5 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? # _chem_comp.formula 'C6 H10 O3' _chem_comp.formula_weight 130.142 _chem_comp.id 7N5 _chem_comp.mon_nstd_flag . _chem_comp.name '2-Ketohexanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1A C1 7N5 doub 1 n n C1 O1B 7N5 sing 2 n n C1 C2 7N5 sing 3 n n C3 C2 7N5 sing 4 n n C3 C4 7N5 sing 5 n n C2 O2 7N5 doub 6 n n C5 C4 7N5 sing 7 n n C5 C6 7N5 sing 8 n n C3 H1 7N5 sing 9 n n C3 H2 7N5 sing 10 n n C5 H3 7N5 sing 11 n n C5 H4 7N5 sing 12 n n C4 H5 7N5 sing 13 n n C4 H6 7N5 sing 14 n n C6 H7 7N5 sing 15 n n C6 H8 7N5 sing 16 n n C6 H9 7N5 sing 17 n n O1B H10 7N5 sing 18 n n # _atom_sites.entry_id 8JDV _atom_sites.fract_transf_matrix[1][1] 0.01208 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009862 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008027 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 501 501 FAD FAD . C 3 MN A 1 502 502 MN MN . D 4 7N5 A 1 503 503 7N5 DRG . E 5 HOH A 1 601 72 HOH HOH . E 5 HOH A 2 602 224 HOH HOH . E 5 HOH A 3 603 116 HOH HOH . E 5 HOH A 4 604 42 HOH HOH . E 5 HOH A 5 605 196 HOH HOH . E 5 HOH A 6 606 44 HOH HOH . E 5 HOH A 7 607 7 HOH HOH . E 5 HOH A 8 608 117 HOH HOH . E 5 HOH A 9 609 100 HOH HOH . E 5 HOH A 10 610 141 HOH HOH . E 5 HOH A 11 611 214 HOH HOH . E 5 HOH A 12 612 248 HOH HOH . E 5 HOH A 13 613 235 HOH HOH . E 5 HOH A 14 614 230 HOH HOH . E 5 HOH A 15 615 56 HOH HOH . E 5 HOH A 16 616 1 HOH HOH . E 5 HOH A 17 617 194 HOH HOH . E 5 HOH A 18 618 67 HOH HOH . E 5 HOH A 19 619 120 HOH HOH . E 5 HOH A 20 620 241 HOH HOH . E 5 HOH A 21 621 119 HOH HOH . E 5 HOH A 22 622 211 HOH HOH . E 5 HOH A 23 623 36 HOH HOH . E 5 HOH A 24 624 237 HOH HOH . E 5 HOH A 25 625 238 HOH HOH . E 5 HOH A 26 626 160 HOH HOH . E 5 HOH A 27 627 59 HOH HOH . E 5 HOH A 28 628 25 HOH HOH . E 5 HOH A 29 629 81 HOH HOH . E 5 HOH A 30 630 111 HOH HOH . E 5 HOH A 31 631 197 HOH HOH . E 5 HOH A 32 632 161 HOH HOH . E 5 HOH A 33 633 23 HOH HOH . E 5 HOH A 34 634 2 HOH HOH . E 5 HOH A 35 635 187 HOH HOH . E 5 HOH A 36 636 105 HOH HOH . E 5 HOH A 37 637 114 HOH HOH . E 5 HOH A 38 638 115 HOH HOH . E 5 HOH A 39 639 61 HOH HOH . E 5 HOH A 40 640 3 HOH HOH . E 5 HOH A 41 641 69 HOH HOH . E 5 HOH A 42 642 233 HOH HOH . E 5 HOH A 43 643 189 HOH HOH . E 5 HOH A 44 644 218 HOH HOH . E 5 HOH A 45 645 37 HOH HOH . E 5 HOH A 46 646 175 HOH HOH . E 5 HOH A 47 647 167 HOH HOH . E 5 HOH A 48 648 11 HOH HOH . E 5 HOH A 49 649 58 HOH HOH . E 5 HOH A 50 650 4 HOH HOH . E 5 HOH A 51 651 18 HOH HOH . E 5 HOH A 52 652 101 HOH HOH . E 5 HOH A 53 653 82 HOH HOH . E 5 HOH A 54 654 34 HOH HOH . E 5 HOH A 55 655 10 HOH HOH . E 5 HOH A 56 656 41 HOH HOH . E 5 HOH A 57 657 205 HOH HOH . E 5 HOH A 58 658 39 HOH HOH . E 5 HOH A 59 659 184 HOH HOH . E 5 HOH A 60 660 221 HOH HOH . E 5 HOH A 61 661 163 HOH HOH . E 5 HOH A 62 662 178 HOH HOH . E 5 HOH A 63 663 157 HOH HOH . E 5 HOH A 64 664 6 HOH HOH . E 5 HOH A 65 665 71 HOH HOH . E 5 HOH A 66 666 60 HOH HOH . E 5 HOH A 67 667 53 HOH HOH . E 5 HOH A 68 668 134 HOH HOH . E 5 HOH A 69 669 113 HOH HOH . E 5 HOH A 70 670 179 HOH HOH . E 5 HOH A 71 671 5 HOH HOH . E 5 HOH A 72 672 80 HOH HOH . E 5 HOH A 73 673 204 HOH HOH . E 5 HOH A 74 674 83 HOH HOH . E 5 HOH A 75 675 130 HOH HOH . E 5 HOH A 76 676 62 HOH HOH . E 5 HOH A 77 677 220 HOH HOH . E 5 HOH A 78 678 32 HOH HOH . E 5 HOH A 79 679 15 HOH HOH . E 5 HOH A 80 680 31 HOH HOH . E 5 HOH A 81 681 14 HOH HOH . E 5 HOH A 82 682 91 HOH HOH . E 5 HOH A 83 683 143 HOH HOH . E 5 HOH A 84 684 162 HOH HOH . E 5 HOH A 85 685 19 HOH HOH . E 5 HOH A 86 686 35 HOH HOH . E 5 HOH A 87 687 122 HOH HOH . E 5 HOH A 88 688 64 HOH HOH . E 5 HOH A 89 689 108 HOH HOH . E 5 HOH A 90 690 112 HOH HOH . E 5 HOH A 91 691 99 HOH HOH . E 5 HOH A 92 692 188 HOH HOH . E 5 HOH A 93 693 151 HOH HOH . E 5 HOH A 94 694 199 HOH HOH . E 5 HOH A 95 695 228 HOH HOH . E 5 HOH A 96 696 210 HOH HOH . E 5 HOH A 97 697 20 HOH HOH . E 5 HOH A 98 698 102 HOH HOH . E 5 HOH A 99 699 127 HOH HOH . E 5 HOH A 100 700 138 HOH HOH . E 5 HOH A 101 701 30 HOH HOH . E 5 HOH A 102 702 132 HOH HOH . E 5 HOH A 103 703 219 HOH HOH . E 5 HOH A 104 704 49 HOH HOH . E 5 HOH A 105 705 97 HOH HOH . E 5 HOH A 106 706 66 HOH HOH . E 5 HOH A 107 707 166 HOH HOH . E 5 HOH A 108 708 9 HOH HOH . E 5 HOH A 109 709 40 HOH HOH . E 5 HOH A 110 710 27 HOH HOH . E 5 HOH A 111 711 48 HOH HOH . E 5 HOH A 112 712 171 HOH HOH . E 5 HOH A 113 713 17 HOH HOH . E 5 HOH A 114 714 26 HOH HOH . E 5 HOH A 115 715 118 HOH HOH . E 5 HOH A 116 716 88 HOH HOH . E 5 HOH A 117 717 227 HOH HOH . E 5 HOH A 118 718 13 HOH HOH . E 5 HOH A 119 719 74 HOH HOH . E 5 HOH A 120 720 95 HOH HOH . E 5 HOH A 121 721 45 HOH HOH . E 5 HOH A 122 722 77 HOH HOH . E 5 HOH A 123 723 250 HOH HOH . E 5 HOH A 124 724 16 HOH HOH . E 5 HOH A 125 725 176 HOH HOH . E 5 HOH A 126 726 70 HOH HOH . E 5 HOH A 127 727 142 HOH HOH . E 5 HOH A 128 728 65 HOH HOH . E 5 HOH A 129 729 22 HOH HOH . E 5 HOH A 130 730 55 HOH HOH . E 5 HOH A 131 731 146 HOH HOH . E 5 HOH A 132 732 104 HOH HOH . E 5 HOH A 133 733 181 HOH HOH . E 5 HOH A 134 734 159 HOH HOH . E 5 HOH A 135 735 21 HOH HOH . E 5 HOH A 136 736 79 HOH HOH . E 5 HOH A 137 737 24 HOH HOH . E 5 HOH A 138 738 90 HOH HOH . E 5 HOH A 139 739 94 HOH HOH . E 5 HOH A 140 740 54 HOH HOH . E 5 HOH A 141 741 139 HOH HOH . E 5 HOH A 142 742 125 HOH HOH . E 5 HOH A 143 743 234 HOH HOH . E 5 HOH A 144 744 246 HOH HOH . E 5 HOH A 145 745 123 HOH HOH . E 5 HOH A 146 746 240 HOH HOH . E 5 HOH A 147 747 152 HOH HOH . E 5 HOH A 148 748 12 HOH HOH . E 5 HOH A 149 749 63 HOH HOH . E 5 HOH A 150 750 47 HOH HOH . E 5 HOH A 151 751 149 HOH HOH . E 5 HOH A 152 752 177 HOH HOH . E 5 HOH A 153 753 93 HOH HOH . E 5 HOH A 154 754 107 HOH HOH . E 5 HOH A 155 755 51 HOH HOH . E 5 HOH A 156 756 212 HOH HOH . E 5 HOH A 157 757 43 HOH HOH . E 5 HOH A 158 758 89 HOH HOH . E 5 HOH A 159 759 68 HOH HOH . E 5 HOH A 160 760 172 HOH HOH . E 5 HOH A 161 761 75 HOH HOH . E 5 HOH A 162 762 96 HOH HOH . E 5 HOH A 163 763 50 HOH HOH . E 5 HOH A 164 764 216 HOH HOH . E 5 HOH A 165 765 192 HOH HOH . E 5 HOH A 166 766 185 HOH HOH . E 5 HOH A 167 767 147 HOH HOH . E 5 HOH A 168 768 86 HOH HOH . E 5 HOH A 169 769 135 HOH HOH . E 5 HOH A 170 770 150 HOH HOH . E 5 HOH A 171 771 28 HOH HOH . E 5 HOH A 172 772 170 HOH HOH . E 5 HOH A 173 773 38 HOH HOH . E 5 HOH A 174 774 29 HOH HOH . E 5 HOH A 175 775 129 HOH HOH . E 5 HOH A 176 776 76 HOH HOH . E 5 HOH A 177 777 110 HOH HOH . E 5 HOH A 178 778 78 HOH HOH . E 5 HOH A 179 779 198 HOH HOH . E 5 HOH A 180 780 85 HOH HOH . E 5 HOH A 181 781 109 HOH HOH . E 5 HOH A 182 782 203 HOH HOH . E 5 HOH A 183 783 46 HOH HOH . E 5 HOH A 184 784 33 HOH HOH . E 5 HOH A 185 785 169 HOH HOH . E 5 HOH A 186 786 52 HOH HOH . E 5 HOH A 187 787 126 HOH HOH . E 5 HOH A 188 788 207 HOH HOH . E 5 HOH A 189 789 140 HOH HOH . E 5 HOH A 190 790 92 HOH HOH . E 5 HOH A 191 791 73 HOH HOH . E 5 HOH A 192 792 165 HOH HOH . E 5 HOH A 193 793 154 HOH HOH . E 5 HOH A 194 794 121 HOH HOH . E 5 HOH A 195 795 164 HOH HOH . E 5 HOH A 196 796 155 HOH HOH . E 5 HOH A 197 797 223 HOH HOH . E 5 HOH A 198 798 144 HOH HOH . E 5 HOH A 199 799 180 HOH HOH . E 5 HOH A 200 800 173 HOH HOH . E 5 HOH A 201 801 239 HOH HOH . E 5 HOH A 202 802 148 HOH HOH . E 5 HOH A 203 803 183 HOH HOH . E 5 HOH A 204 804 8 HOH HOH . E 5 HOH A 205 805 57 HOH HOH . E 5 HOH A 206 806 158 HOH HOH . E 5 HOH A 207 807 174 HOH HOH . E 5 HOH A 208 808 98 HOH HOH . E 5 HOH A 209 809 195 HOH HOH . E 5 HOH A 210 810 103 HOH HOH . E 5 HOH A 211 811 201 HOH HOH . E 5 HOH A 212 812 202 HOH HOH . E 5 HOH A 213 813 191 HOH HOH . E 5 HOH A 214 814 231 HOH HOH . E 5 HOH A 215 815 213 HOH HOH . E 5 HOH A 216 816 225 HOH HOH . E 5 HOH A 217 817 136 HOH HOH . E 5 HOH A 218 818 168 HOH HOH . E 5 HOH A 219 819 137 HOH HOH . E 5 HOH A 220 820 87 HOH HOH . E 5 HOH A 221 821 206 HOH HOH . E 5 HOH A 222 822 128 HOH HOH . E 5 HOH A 223 823 200 HOH HOH . E 5 HOH A 224 824 145 HOH HOH . E 5 HOH A 225 825 244 HOH HOH . E 5 HOH A 226 826 131 HOH HOH . E 5 HOH A 227 827 232 HOH HOH . E 5 HOH A 228 828 251 HOH HOH . E 5 HOH A 229 829 209 HOH HOH . E 5 HOH A 230 830 236 HOH HOH . E 5 HOH A 231 831 247 HOH HOH . E 5 HOH A 232 832 229 HOH HOH . E 5 HOH A 233 833 186 HOH HOH . E 5 HOH A 234 834 215 HOH HOH . E 5 HOH A 235 835 242 HOH HOH . E 5 HOH A 236 836 208 HOH HOH . E 5 HOH A 237 837 84 HOH HOH . E 5 HOH A 238 838 153 HOH HOH . E 5 HOH A 239 839 249 HOH HOH . E 5 HOH A 240 840 243 HOH HOH . E 5 HOH A 241 841 156 HOH HOH . E 5 HOH A 242 842 106 HOH HOH . E 5 HOH A 243 843 190 HOH HOH . E 5 HOH A 244 844 124 HOH HOH . E 5 HOH A 245 845 222 HOH HOH . E 5 HOH A 246 846 193 HOH HOH . E 5 HOH A 247 847 217 HOH HOH . E 5 HOH A 248 848 133 HOH HOH . E 5 HOH A 249 849 226 HOH HOH . E 5 HOH A 250 850 245 HOH HOH . E 5 HOH A 251 851 182 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 7N5 . . . D 4 43.184 28.124 29.328 1 24.64 ? C3 7N5 503 A 1 HETATM 2 C C5 7N5 . . . D 4 42.993 26.836 27.194 0.73 25.05 ? C5 7N5 503 A 1 HETATM 3 C C4 7N5 . . . D 4 42.777 28.173 27.866 1 27.39 ? C4 7N5 503 A 1 HETATM 4 C C2 7N5 . . . D 4 42.802 29.464 29.945 1 27.67 ? C2 7N5 503 A 1 HETATM 5 C C6 7N5 . . . D 4 44.485 26.54 27.248 0.42 25.57 ? C6 7N5 503 A 1 HETATM 6 C C1 7N5 . . . D 4 42.78 29.538 31.465 1 23.27 ? C1 7N5 503 A 1 HETATM 7 O O1A 7N5 . . . D 4 42.27 30.522 32.056 1 22.51 ? O1A 7N5 503 A 1 HETATM 8 O O1B 7N5 . . . D 4 43.287 28.584 32.129 1 28.37 ? O1B 7N5 503 A 1 HETATM 9 O O2 7N5 . . . D 4 42.515 30.404 29.261 1 23.72 ? O2 7N5 503 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #