data_8JDW # _model_server_result.job_id 4UFfAKUjOOZOSVpJ92SFjQ _model_server_result.datetime_utc '2025-03-09 03:52:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jdw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 8JDW # _exptl.entry_id 8JDW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 89.093 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ALANINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JDW _cell.length_a 83.76 _cell.length_b 83.76 _cell.length_c 199.95 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JDW _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_465 x-1/2,-y+3/2,-z+1/4 1 0 0 0 -1 0 0 0 -1 -41.88 125.64 49.9875 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H7 N O2' _chem_comp.formula_weight 89.093 _chem_comp.id ALA _chem_comp.mon_nstd_flag y _chem_comp.name ALANINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ALA sing 1 n n N H ALA sing 2 n n N H2 ALA sing 3 n n CA C ALA sing 4 n n CA CB ALA sing 5 n n CA HA ALA sing 6 n n C O ALA doub 7 n n C OXT ALA sing 8 n n CB HB1 ALA sing 9 n n CB HB2 ALA sing 10 n n CB HB3 ALA sing 11 n n OXT HXT ALA sing 12 n n # _atom_sites.entry_id 8JDW _atom_sites.fract_transf_matrix[1][1] 0.011939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005001 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ALA A 1 500 500 ALA ALN . C 3 HOH A 1 501 1 HOH HOH . C 3 HOH A 2 502 2 HOH HOH . C 3 HOH A 3 503 3 HOH HOH . C 3 HOH A 4 504 4 HOH HOH . C 3 HOH A 5 505 5 HOH HOH . C 3 HOH A 6 506 6 HOH HOH . C 3 HOH A 7 507 7 HOH HOH . C 3 HOH A 8 508 8 HOH HOH . C 3 HOH A 9 509 9 HOH HOH . C 3 HOH A 10 510 10 HOH HOH . C 3 HOH A 11 511 11 HOH HOH . C 3 HOH A 12 512 12 HOH HOH . C 3 HOH A 13 513 13 HOH HOH . C 3 HOH A 14 514 14 HOH HOH . C 3 HOH A 15 515 16 HOH HOH . C 3 HOH A 16 516 17 HOH HOH . C 3 HOH A 17 517 18 HOH HOH . C 3 HOH A 18 518 19 HOH HOH . C 3 HOH A 19 519 20 HOH HOH . C 3 HOH A 20 520 21 HOH HOH . C 3 HOH A 21 521 22 HOH HOH . C 3 HOH A 22 522 23 HOH HOH . C 3 HOH A 23 523 24 HOH HOH . C 3 HOH A 24 524 25 HOH HOH . C 3 HOH A 25 525 27 HOH HOH . C 3 HOH A 26 526 28 HOH HOH . C 3 HOH A 27 527 29 HOH HOH . C 3 HOH A 28 528 30 HOH HOH . C 3 HOH A 29 529 31 HOH HOH . C 3 HOH A 30 530 32 HOH HOH . C 3 HOH A 31 531 33 HOH HOH . C 3 HOH A 32 532 34 HOH HOH . C 3 HOH A 33 533 35 HOH HOH . C 3 HOH A 34 534 36 HOH HOH . C 3 HOH A 35 535 37 HOH HOH . C 3 HOH A 36 536 38 HOH HOH . C 3 HOH A 37 537 39 HOH HOH . C 3 HOH A 38 538 40 HOH HOH . C 3 HOH A 39 539 41 HOH HOH . C 3 HOH A 40 540 43 HOH HOH . C 3 HOH A 41 541 45 HOH HOH . C 3 HOH A 42 542 46 HOH HOH . C 3 HOH A 43 543 47 HOH HOH . C 3 HOH A 44 544 48 HOH HOH . C 3 HOH A 45 545 49 HOH HOH . C 3 HOH A 46 546 51 HOH HOH . C 3 HOH A 47 547 52 HOH HOH . C 3 HOH A 48 548 53 HOH HOH . C 3 HOH A 49 549 54 HOH HOH . C 3 HOH A 50 550 55 HOH HOH . C 3 HOH A 51 551 56 HOH HOH . C 3 HOH A 52 552 57 HOH HOH . C 3 HOH A 53 553 58 HOH HOH . C 3 HOH A 54 554 61 HOH HOH . C 3 HOH A 55 555 63 HOH HOH . C 3 HOH A 56 556 67 HOH HOH . C 3 HOH A 57 557 68 HOH HOH . C 3 HOH A 58 558 70 HOH HOH . C 3 HOH A 59 559 72 HOH HOH . C 3 HOH A 60 560 73 HOH HOH . C 3 HOH A 61 561 74 HOH HOH . C 3 HOH A 62 562 75 HOH HOH . C 3 HOH A 63 563 76 HOH HOH . C 3 HOH A 64 564 77 HOH HOH . C 3 HOH A 65 565 78 HOH HOH . C 3 HOH A 66 566 80 HOH HOH . C 3 HOH A 67 567 82 HOH HOH . C 3 HOH A 68 568 83 HOH HOH . C 3 HOH A 69 569 84 HOH HOH . C 3 HOH A 70 570 91 HOH HOH . C 3 HOH A 71 571 92 HOH HOH . C 3 HOH A 72 572 95 HOH HOH . C 3 HOH A 73 573 99 HOH HOH . C 3 HOH A 74 574 100 HOH HOH . C 3 HOH A 75 575 102 HOH HOH . C 3 HOH A 76 576 103 HOH HOH . C 3 HOH A 77 577 107 HOH HOH . C 3 HOH A 78 578 109 HOH HOH . C 3 HOH A 79 579 110 HOH HOH . C 3 HOH A 80 580 111 HOH HOH . C 3 HOH A 81 581 114 HOH HOH . C 3 HOH A 82 582 115 HOH HOH . C 3 HOH A 83 583 116 HOH HOH . C 3 HOH A 84 584 125 HOH HOH . C 3 HOH A 85 585 132 HOH HOH . C 3 HOH A 86 586 136 HOH HOH . C 3 HOH A 87 587 137 HOH HOH . C 3 HOH A 88 588 140 HOH HOH . C 3 HOH A 89 589 142 HOH HOH . C 3 HOH A 90 590 146 HOH HOH . C 3 HOH A 91 591 151 HOH HOH . C 3 HOH A 92 592 153 HOH HOH . C 3 HOH A 93 593 157 HOH HOH . C 3 HOH A 94 594 159 HOH HOH . C 3 HOH A 95 595 161 HOH HOH . C 3 HOH A 96 596 164 HOH HOH . C 3 HOH A 97 597 168 HOH HOH . C 3 HOH A 98 598 172 HOH HOH . C 3 HOH A 99 599 173 HOH HOH . C 3 HOH A 100 600 174 HOH HOH . C 3 HOH A 101 601 176 HOH HOH . C 3 HOH A 102 602 182 HOH HOH . C 3 HOH A 103 603 185 HOH HOH . C 3 HOH A 104 604 191 HOH HOH . C 3 HOH A 105 605 192 HOH HOH . C 3 HOH A 106 606 193 HOH HOH . C 3 HOH A 107 607 202 HOH HOH . C 3 HOH A 108 608 206 HOH HOH . C 3 HOH A 109 609 213 HOH HOH . C 3 HOH A 110 610 216 HOH HOH . C 3 HOH A 111 611 221 HOH HOH . C 3 HOH A 112 612 225 HOH HOH . C 3 HOH A 113 613 226 HOH HOH . C 3 HOH A 114 614 227 HOH HOH . C 3 HOH A 115 615 228 HOH HOH . C 3 HOH A 116 616 231 HOH HOH . C 3 HOH A 117 617 232 HOH HOH . C 3 HOH A 118 618 234 HOH HOH . C 3 HOH A 119 619 236 HOH HOH . C 3 HOH A 120 620 238 HOH HOH . C 3 HOH A 121 621 239 HOH HOH . C 3 HOH A 122 622 240 HOH HOH . C 3 HOH A 123 623 241 HOH HOH . C 3 HOH A 124 624 242 HOH HOH . C 3 HOH A 125 625 243 HOH HOH . C 3 HOH A 126 626 244 HOH HOH . C 3 HOH A 127 627 248 HOH HOH . C 3 HOH A 128 628 249 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ALA . . . B 2 45.225 73.09 15.13 1 54.64 ? N ALA 500 A 1 HETATM 2 C CA ALA . . . B 2 44.453 72.623 16.324 1 52.47 ? CA ALA 500 A 1 HETATM 3 C C ALA . . . B 2 44.128 73.804 17.254 1 50.72 ? C ALA 500 A 1 HETATM 4 O O ALA . . . B 2 43.172 73.691 18.042 1 48.44 ? O ALA 500 A 1 HETATM 5 C CB ALA . . . B 2 45.228 71.507 17.078 1 51.48 ? CB ALA 500 A 1 HETATM 6 O OXT ALA . . . B 2 44.841 74.833 17.174 1 50.72 ? OXT ALA 500 A 1 HETATM 7 H H1 ALA . . . B 2 46.145 73.442 15.439 1 20 ? H1 ALA 500 A 1 HETATM 8 H H2 ALA . . . B 2 44.678 73.864 14.702 1 20 ? H2 ALA 500 A 1 HETATM 9 H H3 ALA . . . B 2 45.338 72.325 14.438 1 20 ? H3 ALA 500 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #