data_8JE4
#
_model_server_result.job_id            55R5O_hp8et2wxM4R68wDA 
_model_server_result.datetime_utc      '2024-11-05 03:33:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8je4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    8JE4 
#
_exptl.entry_id    8JE4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              193.033 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'TRIHYDROGEN THIODIPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          117.656 
_cell.angle_gamma         90 
_cell.entry_id            8JE4 
_cell.length_a            88.98 
_cell.length_b            47.88 
_cell.length_c            89.46 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JE4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 186 A GLU 186 1_555 C MG MG . A MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc2 C MG MG . A MG 400 1_555 D O5 PIS . A PIS 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc3 C MG MG . A MG 400 1_555 D O6 PIS . A PIS 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc4 C MG MG . A MG 400 1_555 G O HOH . A HOH 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc5 C MG MG . A MG 400 1_555 G O HOH . A HOH 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc6 C MG MG . A MG 400 1_555 G O HOH . A HOH 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc7 B OE2 GLU 186 B GLU 186 1_555 E MG MG . B MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? 
metalc ? metalc8 E MG MG . B MG 400 1_555 F O4 PIS . B PIS 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
metalc ? metalc9 E MG MG . B MG 400 1_555 F O5 PIS . B PIS 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? 
#
_chem_comp.formula           'H3 O6 P2 S -1' 
_chem_comp.formula_weight    193.033 
_chem_comp.id                PIS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'TRIHYDROGEN THIODIPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     THIOPYROPHOSPHATE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P1 O1 PIS sing 260 n n 
P1 O2 PIS sing 261 n n 
P1 O3 PIS sing 262 n n 
P1 O5 PIS doub 263 n n 
O1 P2 PIS sing 264 n n 
P2 S1 PIS sing 265 n n 
P2 O4 PIS sing 266 n n 
P2 O6 PIS doub 267 n n 
O2 HO2 PIS sing 268 n n 
O3 HO3 PIS sing 269 n n 
O4 HO4 PIS sing 270 n n 
#
_atom_sites.entry_id                     8JE4 
_atom_sites.fract_transf_matrix[1][1]    0.011238 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005889 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020886 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01262 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 400 400 MG MG . 
D 3 PIS A 1 401 401 PIS PIS . 
E 2 MG B 1 400 400 MG MG . 
F 3 PIS B 1 401 401 PIS PIS . 
G 4 HOH A 1 501 192 HOH HOH . 
G 4 HOH A 2 502 140 HOH HOH . 
G 4 HOH A 3 503 81 HOH HOH . 
G 4 HOH A 4 504 88 HOH HOH . 
G 4 HOH A 5 505 51 HOH HOH . 
G 4 HOH A 6 506 45 HOH HOH . 
G 4 HOH A 7 507 78 HOH HOH . 
G 4 HOH A 8 508 74 HOH HOH . 
G 4 HOH A 9 509 152 HOH HOH . 
G 4 HOH A 10 510 190 HOH HOH . 
G 4 HOH A 11 511 127 HOH HOH . 
G 4 HOH A 12 512 25 HOH HOH . 
G 4 HOH A 13 513 180 HOH HOH . 
G 4 HOH A 14 514 91 HOH HOH . 
G 4 HOH A 15 515 10 HOH HOH . 
G 4 HOH A 16 516 147 HOH HOH . 
G 4 HOH A 17 517 40 HOH HOH . 
G 4 HOH A 18 518 66 HOH HOH . 
G 4 HOH A 19 519 46 HOH HOH . 
G 4 HOH A 20 520 9 HOH HOH . 
G 4 HOH A 21 521 109 HOH HOH . 
G 4 HOH A 22 522 11 HOH HOH . 
G 4 HOH A 23 523 94 HOH HOH . 
G 4 HOH A 24 524 119 HOH HOH . 
G 4 HOH A 25 525 24 HOH HOH . 
G 4 HOH A 26 526 156 HOH HOH . 
G 4 HOH A 27 527 175 HOH HOH . 
G 4 HOH A 28 528 1 HOH HOH . 
G 4 HOH A 29 529 30 HOH HOH . 
G 4 HOH A 30 530 134 HOH HOH . 
G 4 HOH A 31 531 52 HOH HOH . 
G 4 HOH A 32 532 203 HOH HOH . 
G 4 HOH A 33 533 17 HOH HOH . 
G 4 HOH A 34 534 26 HOH HOH . 
G 4 HOH A 35 535 120 HOH HOH . 
G 4 HOH A 36 536 37 HOH HOH . 
G 4 HOH A 37 537 135 HOH HOH . 
G 4 HOH A 38 538 49 HOH HOH . 
G 4 HOH A 39 539 5 HOH HOH . 
G 4 HOH A 40 540 118 HOH HOH . 
G 4 HOH A 41 541 63 HOH HOH . 
G 4 HOH A 42 542 122 HOH HOH . 
G 4 HOH A 43 543 22 HOH HOH . 
G 4 HOH A 44 544 36 HOH HOH . 
G 4 HOH A 45 545 20 HOH HOH . 
G 4 HOH A 46 546 143 HOH HOH . 
G 4 HOH A 47 547 82 HOH HOH . 
G 4 HOH A 48 548 170 HOH HOH . 
G 4 HOH A 49 549 6 HOH HOH . 
G 4 HOH A 50 550 15 HOH HOH . 
G 4 HOH A 51 551 162 HOH HOH . 
G 4 HOH A 52 552 33 HOH HOH . 
G 4 HOH A 53 553 61 HOH HOH . 
G 4 HOH A 54 554 64 HOH HOH . 
G 4 HOH A 55 555 65 HOH HOH . 
G 4 HOH A 56 556 54 HOH HOH . 
G 4 HOH A 57 557 150 HOH HOH . 
G 4 HOH A 58 558 21 HOH HOH . 
G 4 HOH A 59 559 80 HOH HOH . 
G 4 HOH A 60 560 77 HOH HOH . 
G 4 HOH A 61 561 12 HOH HOH . 
G 4 HOH A 62 562 16 HOH HOH . 
G 4 HOH A 63 563 2 HOH HOH . 
G 4 HOH A 64 564 28 HOH HOH . 
G 4 HOH A 65 565 84 HOH HOH . 
G 4 HOH A 66 566 58 HOH HOH . 
G 4 HOH A 67 567 145 HOH HOH . 
G 4 HOH A 68 568 193 HOH HOH . 
G 4 HOH A 69 569 104 HOH HOH . 
G 4 HOH A 70 570 117 HOH HOH . 
G 4 HOH A 71 571 165 HOH HOH . 
G 4 HOH A 72 572 100 HOH HOH . 
G 4 HOH A 73 573 60 HOH HOH . 
G 4 HOH A 74 574 41 HOH HOH . 
G 4 HOH A 75 575 29 HOH HOH . 
G 4 HOH A 76 576 93 HOH HOH . 
G 4 HOH A 77 577 3 HOH HOH . 
G 4 HOH A 78 578 155 HOH HOH . 
G 4 HOH A 79 579 48 HOH HOH . 
G 4 HOH A 80 580 90 HOH HOH . 
G 4 HOH A 81 581 196 HOH HOH . 
G 4 HOH A 82 582 149 HOH HOH . 
G 4 HOH A 83 583 89 HOH HOH . 
G 4 HOH A 84 584 79 HOH HOH . 
G 4 HOH A 85 585 62 HOH HOH . 
G 4 HOH A 86 586 200 HOH HOH . 
G 4 HOH A 87 587 201 HOH HOH . 
G 4 HOH A 88 588 14 HOH HOH . 
G 4 HOH A 89 589 176 HOH HOH . 
G 4 HOH A 90 590 124 HOH HOH . 
G 4 HOH A 91 591 50 HOH HOH . 
G 4 HOH A 92 592 105 HOH HOH . 
G 4 HOH A 93 593 47 HOH HOH . 
G 4 HOH A 94 594 183 HOH HOH . 
G 4 HOH A 95 595 56 HOH HOH . 
G 4 HOH A 96 596 189 HOH HOH . 
G 4 HOH A 97 597 113 HOH HOH . 
G 4 HOH A 98 598 169 HOH HOH . 
G 4 HOH A 99 599 18 HOH HOH . 
G 4 HOH A 100 600 83 HOH HOH . 
G 4 HOH A 101 601 106 HOH HOH . 
G 4 HOH A 102 602 92 HOH HOH . 
G 4 HOH A 103 603 112 HOH HOH . 
G 4 HOH A 104 604 53 HOH HOH . 
G 4 HOH A 105 605 75 HOH HOH . 
G 4 HOH A 106 606 171 HOH HOH . 
G 4 HOH A 107 607 32 HOH HOH . 
G 4 HOH A 108 608 184 HOH HOH . 
G 4 HOH A 109 609 121 HOH HOH . 
G 4 HOH A 110 610 68 HOH HOH . 
G 4 HOH A 111 611 98 HOH HOH . 
G 4 HOH A 112 612 111 HOH HOH . 
G 4 HOH A 113 613 160 HOH HOH . 
G 4 HOH A 114 614 130 HOH HOH . 
G 4 HOH A 115 615 136 HOH HOH . 
G 4 HOH A 116 616 103 HOH HOH . 
G 4 HOH A 117 617 168 HOH HOH . 
G 4 HOH A 118 618 69 HOH HOH . 
G 4 HOH A 119 619 144 HOH HOH . 
G 4 HOH A 120 620 195 HOH HOH . 
G 4 HOH A 121 621 96 HOH HOH . 
G 4 HOH A 122 622 153 HOH HOH . 
H 4 HOH B 1 501 4 HOH HOH . 
H 4 HOH B 2 502 186 HOH HOH . 
H 4 HOH B 3 503 125 HOH HOH . 
H 4 HOH B 4 504 133 HOH HOH . 
H 4 HOH B 5 505 42 HOH HOH . 
H 4 HOH B 6 506 114 HOH HOH . 
H 4 HOH B 7 507 35 HOH HOH . 
H 4 HOH B 8 508 115 HOH HOH . 
H 4 HOH B 9 509 8 HOH HOH . 
H 4 HOH B 10 510 131 HOH HOH . 
H 4 HOH B 11 511 13 HOH HOH . 
H 4 HOH B 12 512 27 HOH HOH . 
H 4 HOH B 13 513 157 HOH HOH . 
H 4 HOH B 14 514 172 HOH HOH . 
H 4 HOH B 15 515 151 HOH HOH . 
H 4 HOH B 16 516 99 HOH HOH . 
H 4 HOH B 17 517 132 HOH HOH . 
H 4 HOH B 18 518 67 HOH HOH . 
H 4 HOH B 19 519 126 HOH HOH . 
H 4 HOH B 20 520 76 HOH HOH . 
H 4 HOH B 21 521 185 HOH HOH . 
H 4 HOH B 22 522 55 HOH HOH . 
H 4 HOH B 23 523 199 HOH HOH . 
H 4 HOH B 24 524 181 HOH HOH . 
H 4 HOH B 25 525 38 HOH HOH . 
H 4 HOH B 26 526 44 HOH HOH . 
H 4 HOH B 27 527 43 HOH HOH . 
H 4 HOH B 28 528 148 HOH HOH . 
H 4 HOH B 29 529 19 HOH HOH . 
H 4 HOH B 30 530 39 HOH HOH . 
H 4 HOH B 31 531 110 HOH HOH . 
H 4 HOH B 32 532 129 HOH HOH . 
H 4 HOH B 33 533 31 HOH HOH . 
H 4 HOH B 34 534 85 HOH HOH . 
H 4 HOH B 35 535 139 HOH HOH . 
H 4 HOH B 36 536 173 HOH HOH . 
H 4 HOH B 37 537 7 HOH HOH . 
H 4 HOH B 38 538 188 HOH HOH . 
H 4 HOH B 39 539 141 HOH HOH . 
H 4 HOH B 40 540 95 HOH HOH . 
H 4 HOH B 41 541 70 HOH HOH . 
H 4 HOH B 42 542 161 HOH HOH . 
H 4 HOH B 43 543 158 HOH HOH . 
H 4 HOH B 44 544 23 HOH HOH . 
H 4 HOH B 45 545 197 HOH HOH . 
H 4 HOH B 46 546 101 HOH HOH . 
H 4 HOH B 47 547 71 HOH HOH . 
H 4 HOH B 48 548 72 HOH HOH . 
H 4 HOH B 49 549 108 HOH HOH . 
H 4 HOH B 50 550 102 HOH HOH . 
H 4 HOH B 51 551 34 HOH HOH . 
H 4 HOH B 52 552 163 HOH HOH . 
H 4 HOH B 53 553 174 HOH HOH . 
H 4 HOH B 54 554 86 HOH HOH . 
H 4 HOH B 55 555 167 HOH HOH . 
H 4 HOH B 56 556 146 HOH HOH . 
H 4 HOH B 57 557 164 HOH HOH . 
H 4 HOH B 58 558 59 HOH HOH . 
H 4 HOH B 59 559 107 HOH HOH . 
H 4 HOH B 60 560 178 HOH HOH . 
H 4 HOH B 61 561 73 HOH HOH . 
H 4 HOH B 62 562 57 HOH HOH . 
H 4 HOH B 63 563 138 HOH HOH . 
H 4 HOH B 64 564 179 HOH HOH . 
H 4 HOH B 65 565 116 HOH HOH . 
H 4 HOH B 66 566 182 HOH HOH . 
H 4 HOH B 67 567 154 HOH HOH . 
H 4 HOH B 68 568 142 HOH HOH . 
H 4 HOH B 69 569 177 HOH HOH . 
H 4 HOH B 70 570 87 HOH HOH . 
H 4 HOH B 71 571 198 HOH HOH . 
H 4 HOH B 72 572 159 HOH HOH . 
H 4 HOH B 73 573 202 HOH HOH . 
H 4 HOH B 74 574 137 HOH HOH . 
H 4 HOH B 75 575 123 HOH HOH . 
H 4 HOH B 76 576 191 HOH HOH . 
H 4 HOH B 77 577 194 HOH HOH . 
H 4 HOH B 78 578 97 HOH HOH . 
H 4 HOH B 79 579 187 HOH HOH . 
H 4 HOH B 80 580 166 HOH HOH . 
H 4 HOH B 81 581 128 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 PIS . . . F 3 15.219 -11.801 -2.493 1 55.25 ? P1 PIS 401 B 1 
HETATM 2 O O1 PIS . . . F 3 15.896 -11.271 -3.857 1 54.14 ? O1 PIS 401 B 1 
HETATM 3 P P2 PIS . . . F 3 15.372 -11.19 -5.373 1 59.23 ? P2 PIS 401 B 1 
HETATM 4 S S1 PIS . . . F 3 16.761 -10.516 -6.552 1 65.94 ? S1 PIS 401 B 1 
HETATM 5 O O2 PIS . . . F 3 16.237 -11.562 -1.405 1 52.57 ? O2 PIS 401 B 1 
HETATM 6 O O3 PIS . . . F 3 13.958 -10.996 -2.301 1 50.82 ? O3 PIS 401 B 1 
HETATM 7 O O4 PIS . . . F 3 14.893 -12.585 -5.658 1 52.32 ? O4 PIS 401 B 1 
HETATM 8 O O5 PIS . . . F 3 14.945 -13.265 -2.722 1 56.99 ? O5 PIS 401 B 1 
HETATM 9 O O6 PIS . . . F 3 14.177 -10.283 -5.217 1 52.39 ? O6 PIS 401 B 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           9 
#