data_8JE6 # _model_server_result.job_id B5p7RZtCpsl_rS6DyDoYgQ _model_server_result.datetime_utc '2025-08-04 14:18:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8je6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1801}' # _entry.id 8JE6 # _exptl.entry_id 8JE6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.39 _cell.angle_gamma 90 _cell.entry_id 8JE6 _cell.length_a 80.978 _cell.length_b 69.798 _cell.length_c 106.839 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JE6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 437 A CYS 1654 1_555 F ZN ZN . A ZN 1804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc2 A SG CYS 442 A CYS 1659 1_555 F ZN ZN . A ZN 1804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc3 A SG CYS 486 A CYS 1703 1_555 F ZN ZN . A ZN 1804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc4 A SG CYS 491 A CYS 1708 1_555 F ZN ZN . A ZN 1804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc5 C O2G ANP . A ANP 1801 1_555 E MG MG . A MG 1803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc6 C O2B ANP . A ANP 1801 1_555 E MG MG . A MG 1803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc7 B SG CYS 437 B CYS 1654 1_555 J ZN ZN . B ZN 1804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc8 B SG CYS 442 B CYS 1659 1_555 J ZN ZN . B ZN 1804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc9 B SG CYS 486 B CYS 1703 1_555 J ZN ZN . B ZN 1804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc10 B SG CYS 491 B CYS 1708 1_555 J ZN ZN . B ZN 1804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc11 G O2G ANP . B ANP 1801 1_555 I MG MG . B MG 1803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc12 G O2B ANP . B ANP 1801 1_555 I MG MG . B MG 1803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 8JE6 _atom_sites.fract_transf_matrix[1][1] 0.012349 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0034 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014327 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009708 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 1801 1801 ANP ANP . D 3 HFG A 1 1802 1802 HFG HFG . E 4 MG A 1 1803 1803 MG MG . F 5 ZN A 1 1804 1804 ZN ZN . G 2 ANP B 1 1801 1801 ANP ANP . H 3 HFG B 1 1802 1802 HFG HFG . I 4 MG B 1 1803 1803 MG MG . J 5 ZN B 1 1804 1804 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 2 35.194 -11.232 13.38 1 91.93 ? PG ANP 1801 A 1 HETATM 2 O O1G ANP . . . C 2 36.329 -11.53 12.443 1 86.86 ? O1G ANP 1801 A 1 HETATM 3 O O2G ANP . . . C 2 34.95 -9.663 13.437 1 84.23 ? O2G ANP 1801 A 1 HETATM 4 O O3G ANP . . . C 2 33.91 -11.979 12.83 1 84.48 ? O3G ANP 1801 A 1 HETATM 5 P PB ANP . . . C 2 35.044 -10.925 16.253 1 72.11 ? PB ANP 1801 A 1 HETATM 6 O O1B ANP . . . C 2 36.255 -10.339 16.908 1 66.27 ? O1B ANP 1801 A 1 HETATM 7 O O2B ANP . . . C 2 34.211 -9.716 15.733 1 80.99 ? O2B ANP 1801 A 1 HETATM 8 N N3B ANP . . . C 2 35.425 -11.908 14.928 1 85.22 ? N3B ANP 1801 A 1 HETATM 9 P PA ANP . . . C 2 33.76 -11.094 18.609 1 43.63 ? PA ANP 1801 A 1 HETATM 10 O O1A ANP . . . C 2 34.649 -11.295 19.762 1 37.83 ? O1A ANP 1801 A 1 HETATM 11 O O2A ANP . . . C 2 33.697 -9.625 18.245 1 61.88 ? O2A ANP 1801 A 1 HETATM 12 O O3A ANP . . . C 2 34.233 -11.768 17.274 1 59.51 ? O3A ANP 1801 A 1 HETATM 13 O O5' ANP . . . C 2 32.316 -11.646 18.897 1 49.89 ? O5' ANP 1801 A 1 HETATM 14 C C5' ANP . . . C 2 32.104 -12.674 19.887 1 63.46 ? C5' ANP 1801 A 1 HETATM 15 C C4' ANP . . . C 2 31.631 -13.905 19.145 1 59.16 ? C4' ANP 1801 A 1 HETATM 16 O O4' ANP . . . C 2 30.573 -13.51 18.262 1 42.81 ? O4' ANP 1801 A 1 HETATM 17 C C3' ANP . . . C 2 32.721 -14.553 18.293 1 53.85 ? C3' ANP 1801 A 1 HETATM 18 O O3' ANP . . . C 2 32.984 -15.821 18.87 1 52.56 ? O3' ANP 1801 A 1 HETATM 19 C C2' ANP . . . C 2 32.096 -14.733 16.901 1 46.25 ? C2' ANP 1801 A 1 HETATM 20 O O2' ANP . . . C 2 32.044 -16.089 16.489 1 44.84 ? O2' ANP 1801 A 1 HETATM 21 C C1' ANP . . . C 2 30.687 -14.146 17.015 1 45.98 ? C1' ANP 1801 A 1 HETATM 22 N N9 ANP . . . C 2 30.412 -13.122 16.034 1 54.63 ? N9 ANP 1801 A 1 HETATM 23 C C8 ANP . . . C 2 31.192 -12.051 15.689 1 57.68 ? C8 ANP 1801 A 1 HETATM 24 N N7 ANP . . . C 2 30.633 -11.247 14.809 1 62.15 ? N7 ANP 1801 A 1 HETATM 25 C C5 ANP . . . C 2 29.384 -11.812 14.608 1 55.65 ? C5 ANP 1801 A 1 HETATM 26 C C6 ANP . . . C 2 28.296 -11.445 13.785 1 49.02 ? C6 ANP 1801 A 1 HETATM 27 N N6 ANP . . . C 2 28.288 -10.368 13.001 1 52.05 ? N6 ANP 1801 A 1 HETATM 28 N N1 ANP . . . C 2 27.192 -12.214 13.829 1 49.21 ? N1 ANP 1801 A 1 HETATM 29 C C2 ANP . . . C 2 27.186 -13.288 14.626 1 51.1 ? C2 ANP 1801 A 1 HETATM 30 N N3 ANP . . . C 2 28.151 -13.745 15.427 1 42.63 ? N3 ANP 1801 A 1 HETATM 31 C C4 ANP . . . C 2 29.22 -12.956 15.372 1 52.19 ? C4 ANP 1801 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 748 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 31 #