data_8JEK # _model_server_result.job_id ZGwWk2evDj9DknkEqKx-Jg _model_server_result.datetime_utc '2024-11-15 16:32:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jek # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":504}' # _entry.id 8JEK # _exptl.entry_id 8JEK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 863.343 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UBIQUINONE-10 _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JEK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JEK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C CB CYS 52 C CYS 52 1_555 H CBB HEC . C HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.49 ? covale ? covale2 C SG CYS 52 C CYS 52 1_555 H CBB HEC . C HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? covale ? covale3 C CB CYS 55 C CYS 55 1_555 H CBC HEC . C HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.508 ? covale ? covale4 C SG CYS 55 C CYS 55 1_555 H CBC HEC . C HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale5 C N TYR 115 C TYR 115 1_555 H O2D HEC . C HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? covale ? covale6 C SG CYS 201 C CYS 201 1_555 G CAB HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? covale ? covale7 C SG CYS 201 C CYS 201 1_555 G CBB HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale8 C SG CYS 204 C CYS 204 1_555 G CBC HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? covale ? covale9 C SG CYS 343 C CYS 343 1_555 F CAB HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale10 C SG CYS 346 C CYS 346 1_555 F CBC HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? covale ? covale11 C CG1 ILE 393 C ILE 393 1_555 F O2D HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? metalc ? metalc1 A SG CYS 216 A CYS 216 1_555 E FE4 F3S . A F3S 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc2 A SG CYS 222 A CYS 222 1_555 E FE3 F3S . A F3S 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc3 A SG CYS 226 A CYS 226 1_555 E FE1 F3S . A F3S 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc4 C NE2 HIS 56 C HIS 56 1_555 H FE HEC . C HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc5 C NE2 HIS 205 C HIS 205 1_555 G FE HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc6 C NE2 HIS 347 C HIS 347 1_555 F FE HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? # _chem_comp.formula 'C59 H90 O4' _chem_comp.formula_weight 863.343 _chem_comp.id U10 _chem_comp.mon_nstd_flag . _chem_comp.name UBIQUINONE-10 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Coenzyme Q10' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 U10 sing 540 n n C1 C6 U10 doub 541 n n C1 C1M U10 sing 542 n n C2 C3 U10 sing 543 n n C2 O2 U10 doub 544 n n C3 C4 U10 doub 545 n n C3 O3 U10 sing 546 n n C4 C5 U10 sing 547 n n C4 O4 U10 sing 548 n n C5 C6 U10 sing 549 n n C5 O5 U10 doub 550 n n C6 C7 U10 sing 551 n n C1M H1M1 U10 sing 552 n n C1M H1M2 U10 sing 553 n n C1M H1M3 U10 sing 554 n n C3M O3 U10 sing 555 n n C3M H3M1 U10 sing 556 n n C3M H3M2 U10 sing 557 n n C3M H3M3 U10 sing 558 n n C4M O4 U10 sing 559 n n C4M H4M1 U10 sing 560 n n C4M H4M2 U10 sing 561 n n C4M H4M3 U10 sing 562 n n C7 C8 U10 sing 563 n n C7 H71 U10 sing 564 n n C7 H72 U10 sing 565 n n C8 C9 U10 doub 566 e n C8 H8 U10 sing 567 n n C9 C10 U10 sing 568 n n C9 C11 U10 sing 569 n n C10 H101 U10 sing 570 n n C10 H102 U10 sing 571 n n C10 H103 U10 sing 572 n n C11 C12 U10 sing 573 n n C11 H111 U10 sing 574 n n C11 H112 U10 sing 575 n n C12 C13 U10 sing 576 n n C12 H121 U10 sing 577 n n C12 H122 U10 sing 578 n n C13 C14 U10 doub 579 e n C13 H13 U10 sing 580 n n C14 C15 U10 sing 581 n n C14 C16 U10 sing 582 n n C15 H151 U10 sing 583 n n C15 H152 U10 sing 584 n n C15 H153 U10 sing 585 n n C16 C17 U10 sing 586 n n C16 H161 U10 sing 587 n n C16 H162 U10 sing 588 n n C17 C18 U10 sing 589 n n C17 H171 U10 sing 590 n n C17 H172 U10 sing 591 n n C18 C19 U10 doub 592 e n C18 H18 U10 sing 593 n n C19 C20 U10 sing 594 n n C19 C21 U10 sing 595 n n C20 H201 U10 sing 596 n n C20 H202 U10 sing 597 n n C20 H203 U10 sing 598 n n C21 C22 U10 sing 599 n n C21 H211 U10 sing 600 n n C21 H212 U10 sing 601 n n C22 C23 U10 sing 602 n n C22 H221 U10 sing 603 n n C22 H222 U10 sing 604 n n C23 C24 U10 doub 605 e n C23 H23 U10 sing 606 n n C24 C25 U10 sing 607 n n C24 C26 U10 sing 608 n n C25 H251 U10 sing 609 n n C25 H252 U10 sing 610 n n C25 H253 U10 sing 611 n n C26 C27 U10 sing 612 n n C26 H261 U10 sing 613 n n C26 H262 U10 sing 614 n n C27 C28 U10 sing 615 n n C27 H271 U10 sing 616 n n C27 H272 U10 sing 617 n n C28 C29 U10 doub 618 e n C28 H28 U10 sing 619 n n C29 C30 U10 sing 620 n n C29 C31 U10 sing 621 n n C30 H301 U10 sing 622 n n C30 H302 U10 sing 623 n n C30 H303 U10 sing 624 n n C31 C32 U10 sing 625 n n C31 H311 U10 sing 626 n n C31 H312 U10 sing 627 n n C32 C33 U10 sing 628 n n C32 H321 U10 sing 629 n n C32 H322 U10 sing 630 n n C33 C34 U10 doub 631 e n C33 H33 U10 sing 632 n n C34 C35 U10 sing 633 n n C34 C36 U10 sing 634 n n C35 H351 U10 sing 635 n n C35 H352 U10 sing 636 n n C35 H353 U10 sing 637 n n C36 C37 U10 sing 638 n n C36 H361 U10 sing 639 n n C36 H362 U10 sing 640 n n C37 C38 U10 sing 641 n n C37 H371 U10 sing 642 n n C37 H372 U10 sing 643 n n C38 C39 U10 doub 644 e n C38 H38 U10 sing 645 n n C39 C40 U10 sing 646 n n C39 C41 U10 sing 647 n n C40 H401 U10 sing 648 n n C40 H402 U10 sing 649 n n C40 H403 U10 sing 650 n n C41 C42 U10 sing 651 n n C41 H411 U10 sing 652 n n C41 H412 U10 sing 653 n n C42 C43 U10 sing 654 n n C42 H421 U10 sing 655 n n C42 H422 U10 sing 656 n n C43 C44 U10 doub 657 e n C43 H43 U10 sing 658 n n C44 C45 U10 sing 659 n n C44 C46 U10 sing 660 n n C45 H451 U10 sing 661 n n C45 H452 U10 sing 662 n n C45 H453 U10 sing 663 n n C46 C47 U10 sing 664 n n C46 H461 U10 sing 665 n n C46 H462 U10 sing 666 n n C47 C48 U10 sing 667 n n C47 H471 U10 sing 668 n n C47 H472 U10 sing 669 n n C48 C49 U10 doub 670 e n C48 H48 U10 sing 671 n n C49 C50 U10 sing 672 n n C49 C51 U10 sing 673 n n C50 H501 U10 sing 674 n n C50 H502 U10 sing 675 n n C50 H503 U10 sing 676 n n C51 C52 U10 sing 677 n n C51 H511 U10 sing 678 n n C51 H512 U10 sing 679 n n C52 C53 U10 sing 680 n n C52 H521 U10 sing 681 n n C52 H522 U10 sing 682 n n C53 C54 U10 doub 683 n n C53 H53 U10 sing 684 n n C54 C55 U10 sing 685 n n C54 C56 U10 sing 686 n n C55 H551 U10 sing 687 n n C55 H552 U10 sing 688 n n C55 H553 U10 sing 689 n n C56 H561 U10 sing 690 n n C56 H562 U10 sing 691 n n C56 H563 U10 sing 692 n n # _atom_sites.entry_id 8JEK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 FAD A 1 601 601 FAD FAD . E 5 F3S A 1 602 602 F3S F3S . F 6 HEC C 1 501 501 HEC HEC . G 6 HEC C 1 502 502 HEC HEC . H 6 HEC C 1 503 503 HEC HEC . I 7 U10 C 1 504 504 U10 U10 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 U10 . . . I 7 119.501 80.13 126.393 1 71.78 ? C1 U10 504 C 1 HETATM 2 C C2 U10 . . . I 7 119.831 79.079 125.441 1 70.59 ? C2 U10 504 C 1 HETATM 3 C C3 U10 . . . I 7 120.586 77.971 125.862 1 71.7 ? C3 U10 504 C 1 HETATM 4 C C4 U10 . . . I 7 121.376 78.123 127.02 1 72.02 ? C4 U10 504 C 1 HETATM 5 C C5 U10 . . . I 7 120.984 79.081 127.979 1 71.27 ? C5 U10 504 C 1 HETATM 6 C C6 U10 . . . I 7 119.991 80.055 127.672 1 70.46 ? C6 U10 504 C 1 HETATM 7 C C1M U10 . . . I 7 118.606 81.239 125.945 1 72.74 ? C1M U10 504 C 1 HETATM 8 C C3M U10 . . . I 7 120.404 75.624 125.739 1 68.33 ? C3M U10 504 C 1 HETATM 9 C C4M U10 . . . I 7 123.399 77.194 126.231 1 69.04 ? C4M U10 504 C 1 HETATM 10 C C7 U10 . . . I 7 119.483 80.991 128.747 1 67.6 ? C7 U10 504 C 1 HETATM 11 C C8 U10 . . . I 7 120.549 81.823 129.408 1 68.74 ? C8 U10 504 C 1 HETATM 12 C C9 U10 . . . I 7 120.366 82.737 130.347 1 72.56 ? C9 U10 504 C 1 HETATM 13 C C10 U10 . . . I 7 119 83.148 130.807 1 70.58 ? C10 U10 504 C 1 HETATM 14 C C11 U10 . . . I 7 121.515 83.42 131.036 1 69.54 ? C11 U10 504 C 1 HETATM 15 C C12 U10 . . . I 7 121.061 84.457 132.048 1 67.61 ? C12 U10 504 C 1 HETATM 16 C C13 U10 . . . I 7 122.164 85.12 132.814 1 73.23 ? C13 U10 504 C 1 HETATM 17 C C14 U10 . . . I 7 122.054 86.085 133.724 1 75.9 ? C14 U10 504 C 1 HETATM 18 C C15 U10 . . . I 7 120.812 86.901 133.92 1 68.17 ? C15 U10 504 C 1 HETATM 19 C C16 U10 . . . I 7 123.175 86.398 134.675 1 69.85 ? C16 U10 504 C 1 HETATM 20 C C17 U10 . . . I 7 123.599 87.851 134.664 1 69.84 ? C17 U10 504 C 1 HETATM 21 C C18 U10 . . . I 7 124.507 88.188 135.807 1 69.54 ? C18 U10 504 C 1 HETATM 22 C C19 U10 . . . I 7 125.112 89.344 136.062 1 72.58 ? C19 U10 504 C 1 HETATM 23 C C20 U10 . . . I 7 125.053 90.529 135.144 1 66.68 ? C20 U10 504 C 1 HETATM 24 C C21 U10 . . . I 7 125.927 89.527 137.313 1 69.08 ? C21 U10 504 C 1 HETATM 25 C C22 U10 . . . I 7 126.48 90.919 137.576 1 68.55 ? C22 U10 504 C 1 HETATM 26 C C23 U10 . . . I 7 125.51 91.889 138.182 1 64.24 ? C23 U10 504 C 1 HETATM 27 C C24 U10 . . . I 7 124.967 91.877 139.397 1 70.68 ? C24 U10 504 C 1 HETATM 28 C C25 U10 . . . I 7 125.286 90.86 140.451 1 70.71 ? C25 U10 504 C 1 HETATM 29 C C26 U10 . . . I 7 123.978 92.931 139.807 1 71.97 ? C26 U10 504 C 1 HETATM 30 C C27 U10 . . . I 7 123.233 92.64 141.095 1 69.53 ? C27 U10 504 C 1 HETATM 31 C C28 U10 . . . I 7 122.373 93.801 141.482 1 70.03 ? C28 U10 504 C 1 HETATM 32 C C29 U10 . . . I 7 122.412 94.516 142.602 1 72.58 ? C29 U10 504 C 1 HETATM 33 C C30 U10 . . . I 7 122.852 93.971 143.927 1 67.99 ? C30 U10 504 C 1 HETATM 34 C C31 U10 . . . I 7 122.092 95.983 142.586 1 70.01 ? C31 U10 504 C 1 HETATM 35 C C32 U10 . . . I 7 123.084 96.741 141.726 1 66.59 ? C32 U10 504 C 1 HETATM 36 C C33 U10 . . . I 7 122.793 98.205 141.65 1 70.24 ? C33 U10 504 C 1 HETATM 37 C C34 U10 . . . I 7 122.719 98.979 140.571 1 73.1 ? C34 U10 504 C 1 HETATM 38 C C35 U10 . . . I 7 123.002 98.501 139.179 1 68.24 ? C35 U10 504 C 1 HETATM 39 C C36 U10 . . . I 7 122.323 100.423 140.687 1 65.19 ? C36 U10 504 C 1 HETATM 40 C C37 U10 . . . I 7 123.41 101.406 140.305 1 63.48 ? C37 U10 504 C 1 HETATM 41 C C38 U10 . . . I 7 123.019 102.804 140.665 1 69.84 ? C38 U10 504 C 1 HETATM 42 C C39 U10 . . . I 7 122.785 103.831 139.854 1 75.76 ? C39 U10 504 C 1 HETATM 43 C C40 U10 . . . I 7 123.086 103.82 138.385 1 67.61 ? C40 U10 504 C 1 HETATM 44 C C41 U10 . . . I 7 122.135 105.086 140.364 1 71.89 ? C41 U10 504 C 1 HETATM 45 C C42 U10 . . . I 7 123.016 106.312 140.293 1 70.58 ? C42 U10 504 C 1 HETATM 46 C C43 U10 . . . I 7 124.237 106.208 141.152 1 68.24 ? C43 U10 504 C 1 HETATM 47 C C44 U10 . . . I 7 124.546 106.938 142.219 1 66.48 ? C44 U10 504 C 1 HETATM 48 C C45 U10 . . . I 7 123.663 108.018 142.767 1 63.24 ? C45 U10 504 C 1 HETATM 49 C C46 U10 . . . I 7 125.833 106.723 142.966 1 57.89 ? C46 U10 504 C 1 HETATM 50 C C47 U10 . . . I 7 125.632 106.192 144.371 1 63.21 ? C47 U10 504 C 1 HETATM 51 C C48 U10 . . . I 7 125.051 104.812 144.4 1 69.13 ? C48 U10 504 C 1 HETATM 52 C C49 U10 . . . I 7 123.914 104.402 144.956 1 67.49 ? C49 U10 504 C 1 HETATM 53 C C50 U10 . . . I 7 122.952 105.307 145.663 1 66.16 ? C50 U10 504 C 1 HETATM 54 O O2 U10 . . . I 7 119.42 79.116 124.29 1 68.75 ? O2 U10 504 C 1 HETATM 55 O O3 U10 . . . I 7 120.51 76.878 125.057 1 71.42 ? O3 U10 504 C 1 HETATM 56 O O4 U10 . . . I 7 122.515 77.446 127.328 1 74.5 ? O4 U10 504 C 1 HETATM 57 O O5 U10 . . . I 7 121.531 79.055 129.072 1 75.02 ? O5 U10 504 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 57 #