data_8JEK
#
_model_server_result.job_id            r30oMP2Uw2_eobgLDgnwgw 
_model_server_result.datetime_utc      '2024-11-15 16:40:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jek 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    8JEK 
#
_exptl.entry_id    8JEK 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8JEK 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JEK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C CB CYS 52 C CYS 52 1_555 H CBB HEC . C HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.49 ? 
covale ? covale2 C SG CYS 52 C CYS 52 1_555 H CBB HEC . C HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? 
covale ? covale3 C CB CYS 55 C CYS 55 1_555 H CBC HEC . C HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.508 ? 
covale ? covale4 C SG CYS 55 C CYS 55 1_555 H CBC HEC . C HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? 
covale ? covale5 C N TYR 115 C TYR 115 1_555 H O2D HEC . C HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? 
covale ? covale6 C SG CYS 201 C CYS 201 1_555 G CAB HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? 
covale ? covale7 C SG CYS 201 C CYS 201 1_555 G CBB HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? 
covale ? covale8 C SG CYS 204 C CYS 204 1_555 G CBC HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? 
covale ? covale9 C SG CYS 343 C CYS 343 1_555 F CAB HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? 
covale ? covale10 C SG CYS 346 C CYS 346 1_555 F CBC HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? 
covale ? covale11 C CG1 ILE 393 C ILE 393 1_555 F O2D HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? 
metalc ? metalc1 A SG CYS 216 A CYS 216 1_555 E FE4 F3S . A F3S 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc2 A SG CYS 222 A CYS 222 1_555 E FE3 F3S . A F3S 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc3 A SG CYS 226 A CYS 226 1_555 E FE1 F3S . A F3S 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc4 C NE2 HIS 56 C HIS 56 1_555 H FE HEC . C HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
metalc ? metalc5 C NE2 HIS 205 C HIS 205 1_555 G FE HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc6 C NE2 HIS 347 C HIS 347 1_555 F FE HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 92 n n 
PA O2A FAD sing 93 n n 
PA O5B FAD sing 94 n n 
PA O3P FAD sing 95 n n 
O2A HOA2 FAD sing 96 n n 
O5B C5B FAD sing 97 n n 
C5B C4B FAD sing 98 n n 
C5B H51A FAD sing 99 n n 
C5B H52A FAD sing 100 n n 
C4B O4B FAD sing 101 n n 
C4B C3B FAD sing 102 n n 
C4B H4B FAD sing 103 n n 
O4B C1B FAD sing 104 n n 
C3B O3B FAD sing 105 n n 
C3B C2B FAD sing 106 n n 
C3B H3B FAD sing 107 n n 
O3B HO3A FAD sing 108 n n 
C2B O2B FAD sing 109 n n 
C2B C1B FAD sing 110 n n 
C2B H2B FAD sing 111 n n 
O2B HO2A FAD sing 112 n n 
C1B N9A FAD sing 113 n n 
C1B H1B FAD sing 114 n n 
N9A C8A FAD sing 115 n y 
N9A C4A FAD sing 116 n y 
C8A N7A FAD doub 117 n y 
C8A H8A FAD sing 118 n n 
N7A C5A FAD sing 119 n y 
C5A C6A FAD sing 120 n y 
C5A C4A FAD doub 121 n y 
C6A N6A FAD sing 122 n n 
C6A N1A FAD doub 123 n y 
N6A H61A FAD sing 124 n n 
N6A H62A FAD sing 125 n n 
N1A C2A FAD sing 126 n y 
C2A N3A FAD doub 127 n y 
C2A H2A FAD sing 128 n n 
N3A C4A FAD sing 129 n y 
N1 C2 FAD sing 130 n n 
N1 C10 FAD doub 131 n n 
C2 O2 FAD doub 132 n n 
C2 N3 FAD sing 133 n n 
N3 C4 FAD sing 134 n n 
N3 HN3 FAD sing 135 n n 
C4 O4 FAD doub 136 n n 
C4 C4X FAD sing 137 n n 
C4X N5 FAD doub 138 n n 
C4X C10 FAD sing 139 n n 
N5 C5X FAD sing 140 n n 
C5X C6 FAD doub 141 n y 
C5X C9A FAD sing 142 n y 
C6 C7 FAD sing 143 n y 
C6 H6 FAD sing 144 n n 
C7 C7M FAD sing 145 n n 
C7 C8 FAD doub 146 n y 
C7M HM71 FAD sing 147 n n 
C7M HM72 FAD sing 148 n n 
C7M HM73 FAD sing 149 n n 
C8 C8M FAD sing 150 n n 
C8 C9 FAD sing 151 n y 
C8M HM81 FAD sing 152 n n 
C8M HM82 FAD sing 153 n n 
C8M HM83 FAD sing 154 n n 
C9 C9A FAD doub 155 n y 
C9 H9 FAD sing 156 n n 
C9A N10 FAD sing 157 n n 
N10 C10 FAD sing 158 n n 
N10 C1' FAD sing 159 n n 
C1' C2' FAD sing 160 n n 
C1' "H1'1" FAD sing 161 n n 
C1' "H1'2" FAD sing 162 n n 
C2' O2' FAD sing 163 n n 
C2' C3' FAD sing 164 n n 
C2' H2' FAD sing 165 n n 
O2' HO2' FAD sing 166 n n 
C3' O3' FAD sing 167 n n 
C3' C4' FAD sing 168 n n 
C3' H3' FAD sing 169 n n 
O3' HO3' FAD sing 170 n n 
C4' O4' FAD sing 171 n n 
C4' C5' FAD sing 172 n n 
C4' H4' FAD sing 173 n n 
O4' HO4' FAD sing 174 n n 
C5' O5' FAD sing 175 n n 
C5' "H5'1" FAD sing 176 n n 
C5' "H5'2" FAD sing 177 n n 
O5' P FAD sing 178 n n 
P O1P FAD doub 179 n n 
P O2P FAD sing 180 n n 
P O3P FAD sing 181 n n 
O2P HOP2 FAD sing 182 n n 
#
_atom_sites.entry_id                     8JEK 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 FAD A 1 601 601 FAD FAD . 
E 5 F3S A 1 602 602 F3S F3S . 
F 6 HEC C 1 501 501 HEC HEC . 
G 6 HEC C 1 502 502 HEC HEC . 
H 6 HEC C 1 503 503 HEC HEC . 
I 7 U10 C 1 504 504 U10 U10 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . D 4 109.445 135.704 137.841 1 38.14 ? PA FAD 601 A 1 
HETATM 2 O O1A FAD . . . D 4 110.242 134.493 138.192 1 47.9 ? O1A FAD 601 A 1 
HETATM 3 O O2A FAD . . . D 4 109.961 137.041 138.254 1 41.76 ? O2A FAD 601 A 1 
HETATM 4 O O5B FAD . . . D 4 109.174 135.703 136.26 1 36.05 ? O5B FAD 601 A 1 
HETATM 5 C C5B FAD . . . D 4 108.484 134.558 135.702 1 32.71 ? C5B FAD 601 A 1 
HETATM 6 C C4B FAD . . . D 4 108.682 134.504 134.207 1 30.74 ? C4B FAD 601 A 1 
HETATM 7 O O4B FAD . . . D 4 107.744 135.368 133.523 1 39.59 ? O4B FAD 601 A 1 
HETATM 8 C C3B FAD . . . D 4 110.058 134.923 133.661 1 38.53 ? C3B FAD 601 A 1 
HETATM 9 O O3B FAD . . . D 4 110.811 133.774 133.297 1 43.63 ? O3B FAD 601 A 1 
HETATM 10 C C2B FAD . . . D 4 109.721 135.808 132.45 1 37.96 ? C2B FAD 601 A 1 
HETATM 11 O O2B FAD . . . D 4 110.532 135.58 131.319 1 35.33 ? O2B FAD 601 A 1 
HETATM 12 C C1B FAD . . . D 4 108.25 135.486 132.219 1 39.65 ? C1B FAD 601 A 1 
HETATM 13 N N9A FAD . . . D 4 107.493 136.501 131.498 1 34.28 ? N9A FAD 601 A 1 
HETATM 14 C C8A FAD . . . D 4 107.348 137.829 131.807 1 34.02 ? C8A FAD 601 A 1 
HETATM 15 N N7A FAD . . . D 4 106.597 138.469 130.941 1 36.63 ? N7A FAD 601 A 1 
HETATM 16 C C5A FAD . . . D 4 106.232 137.506 130.009 1 44.26 ? C5A FAD 601 A 1 
HETATM 17 C C6A FAD . . . D 4 105.443 137.553 128.844 1 35.89 ? C6A FAD 601 A 1 
HETATM 18 N N6A FAD . . . D 4 104.85 138.655 128.395 1 27.64 ? N6A FAD 601 A 1 
HETATM 19 N N1A FAD . . . D 4 105.29 136.401 128.15 1 33.2 ? N1A FAD 601 A 1 
HETATM 20 C C2A FAD . . . D 4 105.89 135.294 128.604 1 33.97 ? C2A FAD 601 A 1 
HETATM 21 N N3A FAD . . . D 4 106.65 135.131 129.684 1 42.27 ? N3A FAD 601 A 1 
HETATM 22 C C4A FAD . . . D 4 106.782 136.29 130.348 1 40.6 ? C4A FAD 601 A 1 
HETATM 23 N N1 FAD . . . D 4 111.895 136.136 147.427 1 38.75 ? N1 FAD 601 A 1 
HETATM 24 C C2 FAD . . . D 4 111.851 135.576 148.652 1 38.92 ? C2 FAD 601 A 1 
HETATM 25 O O2 FAD . . . D 4 110.824 135.041 149.066 1 45.56 ? O2 FAD 601 A 1 
HETATM 26 N N3 FAD . . . D 4 112.92 135.574 149.482 1 29.55 ? N3 FAD 601 A 1 
HETATM 27 C C4 FAD . . . D 4 114.113 136.147 149.128 1 32.4 ? C4 FAD 601 A 1 
HETATM 28 O O4 FAD . . . D 4 115.053 136.122 149.907 1 39.91 ? O4 FAD 601 A 1 
HETATM 29 C C4X FAD . . . D 4 114.204 136.736 147.86 1 37.38 ? C4X FAD 601 A 1 
HETATM 30 N N5 FAD . . . D 4 115.339 137.281 147.512 1 33.99 ? N5 FAD 601 A 1 
HETATM 31 C C5X FAD . . . D 4 115.408 137.846 146.269 1 35.94 ? C5X FAD 601 A 1 
HETATM 32 C C6 FAD . . . D 4 116.624 138.432 145.878 1 31.49 ? C6 FAD 601 A 1 
HETATM 33 C C7 FAD . . . D 4 116.772 139.016 144.645 1 37.32 ? C7 FAD 601 A 1 
HETATM 34 C C7M FAD . . . D 4 118.091 139.633 144.258 1 34.62 ? C7M FAD 601 A 1 
HETATM 35 C C8 FAD . . . D 4 115.679 139.03 143.749 1 42.47 ? C8 FAD 601 A 1 
HETATM 36 C C8M FAD . . . D 4 115.817 139.671 142.394 1 29.03 ? C8M FAD 601 A 1 
HETATM 37 C C9 FAD . . . D 4 114.478 138.463 144.121 1 41.34 ? C9 FAD 601 A 1 
HETATM 38 C C9A FAD . . . D 4 114.316 137.86 145.378 1 36.26 ? C9A FAD 601 A 1 
HETATM 39 N N10 FAD . . . D 4 113.118 137.278 145.789 1 34.94 ? N10 FAD 601 A 1 
HETATM 40 C C10 FAD . . . D 4 113.022 136.692 147.04 1 40.11 ? C10 FAD 601 A 1 
HETATM 41 C C1' FAD . . . D 4 111.959 137.265 144.876 1 23.44 ? C1' FAD 601 A 1 
HETATM 42 C C2' FAD . . . D 4 111.71 135.88 144.303 1 41.72 ? C2' FAD 601 A 1 
HETATM 43 O O2' FAD . . . D 4 112.911 135.133 144.414 1 53.81 ? O2' FAD 601 A 1 
HETATM 44 C C3' FAD . . . D 4 111.332 135.903 142.821 1 35.63 ? C3' FAD 601 A 1 
HETATM 45 O O3' FAD . . . D 4 112.203 136.812 142.176 1 51.5 ? O3' FAD 601 A 1 
HETATM 46 C C4' FAD . . . D 4 109.884 136.252 142.469 1 28.61 ? C4' FAD 601 A 1 
HETATM 47 O O4' FAD . . . D 4 109.035 135.979 143.583 1 42.82 ? O4' FAD 601 A 1 
HETATM 48 C C5' FAD . . . D 4 109.4 135.457 141.278 1 26.67 ? C5' FAD 601 A 1 
HETATM 49 O O5' FAD . . . D 4 108.015 135.756 140.942 1 42.58 ? O5' FAD 601 A 1 
HETATM 50 P P FAD . . . D 4 107.291 134.944 139.758 1 44.94 ? P FAD 601 A 1 
HETATM 51 O O1P FAD . . . D 4 107.628 133.499 139.891 1 33.11 ? O1P FAD 601 A 1 
HETATM 52 O O2P FAD . . . D 4 105.848 135.324 139.771 1 45.91 ? O2P FAD 601 A 1 
HETATM 53 O O3P FAD . . . D 4 107.958 135.524 138.416 1 32.11 ? O3P FAD 601 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           345 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           53 
#