data_8JEK # _model_server_result.job_id GKAzfghI0MrH9qCiR4I-cA _model_server_result.datetime_utc '2024-11-15 16:37:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jek # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":602}' # _entry.id 8JEK # _exptl.entry_id 8JEK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 295.795 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE3-S4 CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JEK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JEK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C CB CYS 52 C CYS 52 1_555 H CBB HEC . C HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.49 ? covale ? covale2 C SG CYS 52 C CYS 52 1_555 H CBB HEC . C HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? covale ? covale3 C CB CYS 55 C CYS 55 1_555 H CBC HEC . C HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.508 ? covale ? covale4 C SG CYS 55 C CYS 55 1_555 H CBC HEC . C HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale5 C N TYR 115 C TYR 115 1_555 H O2D HEC . C HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? covale ? covale6 C SG CYS 201 C CYS 201 1_555 G CAB HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? covale ? covale7 C SG CYS 201 C CYS 201 1_555 G CBB HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale8 C SG CYS 204 C CYS 204 1_555 G CBC HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? covale ? covale9 C SG CYS 343 C CYS 343 1_555 F CAB HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale10 C SG CYS 346 C CYS 346 1_555 F CBC HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? covale ? covale11 C CG1 ILE 393 C ILE 393 1_555 F O2D HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? metalc ? metalc1 A SG CYS 216 A CYS 216 1_555 E FE4 F3S . A F3S 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc2 A SG CYS 222 A CYS 222 1_555 E FE3 F3S . A F3S 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc3 A SG CYS 226 A CYS 226 1_555 E FE1 F3S . A F3S 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc4 C NE2 HIS 56 C HIS 56 1_555 H FE HEC . C HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc5 C NE2 HIS 205 C HIS 205 1_555 G FE HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc6 C NE2 HIS 347 C HIS 347 1_555 F FE HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? # _chem_comp.formula 'Fe3 S4' _chem_comp.formula_weight 295.795 _chem_comp.id F3S _chem_comp.mon_nstd_flag . _chem_comp.name 'FE3-S4 CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S1 F3S sing 83 n n FE1 S2 F3S sing 84 n n FE1 S3 F3S sing 85 n n FE3 S1 F3S sing 86 n n FE3 S3 F3S sing 87 n n FE3 S4 F3S sing 88 n n FE4 S2 F3S sing 89 n n FE4 S3 F3S sing 90 n n FE4 S4 F3S sing 91 n n # _atom_sites.entry_id 8JEK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 FAD A 1 601 601 FAD FAD . E 5 F3S A 1 602 602 F3S F3S . F 6 HEC C 1 501 501 HEC HEC . G 6 HEC C 1 502 502 HEC HEC . H 6 HEC C 1 503 503 HEC HEC . I 7 U10 C 1 504 504 U10 U10 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 F3S . . . E 5 124.649 127.542 147.387 1 37.54 ? FE1 F3S 602 A 1 HETATM 2 FE FE3 F3S . . . E 5 124.138 129.641 148.894 1 41.35 ? FE3 F3S 602 A 1 HETATM 3 FE FE4 F3S . . . E 5 124.758 127.335 149.949 1 36.93 ? FE4 F3S 602 A 1 HETATM 4 S S1 F3S . . . E 5 125.383 129.646 147.012 1 29.32 ? S1 F3S 602 A 1 HETATM 5 S S2 F3S . . . E 5 126.15 126.28 148.515 1 20.27 ? S2 F3S 602 A 1 HETATM 6 S S3 F3S . . . E 5 122.883 127.764 148.771 1 26.22 ? S3 F3S 602 A 1 HETATM 7 S S4 F3S . . . E 5 125.53 129.341 150.637 1 22.13 ? S4 F3S 602 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 7 #