data_8JEM # _model_server_result.job_id 2qMsvSYW6jMhfjPCyXFclg _model_server_result.datetime_utc '2024-11-15 15:35:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jem # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"QA","auth_seq_id":501}' # _entry.id 8JEM # _exptl.entry_id 8JEM _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 393.459 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[4-(acridin-9-ylamino)-3-methoxyphenyl]methanesulfonamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JEM _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JEM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 P N N ? 2 FA N N ? 2 QA N N # _chem_comp.formula 'C21 H19 N3 O3 S' _chem_comp.formula_weight 393.459 _chem_comp.id ASW _chem_comp.mon_nstd_flag . _chem_comp.name N-[4-(acridin-9-ylamino)-3-methoxyphenyl]methanesulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Amsacrine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O2 ASW sing 70 n n O2 C3 ASW sing 71 n n O10 S7 ASW doub 72 n n C4 C3 ASW doub 73 n y C4 C5 ASW sing 74 n y C8 S7 ASW sing 75 n n C3 C13 ASW sing 76 n y S7 N6 ASW sing 77 n n S7 O9 ASW doub 78 n n N6 C5 ASW sing 79 n n C5 C11 ASW doub 80 n y C26 C27 ASW doub 81 n y C26 C25 ASW sing 82 n y C27 C28 ASW sing 83 n y C13 N14 ASW sing 84 n n C13 C12 ASW doub 85 n y N14 C15 ASW sing 86 n n C25 C24 ASW doub 87 n y C11 C12 ASW sing 88 n y C28 C15 ASW doub 89 n y C28 C23 ASW sing 90 n y C15 C16 ASW sing 91 n y C24 C23 ASW sing 92 n y C23 N22 ASW doub 93 n y C16 C17 ASW doub 94 n y C16 C21 ASW sing 95 n y C17 C18 ASW sing 96 n y N22 C21 ASW sing 97 n y C21 C20 ASW doub 98 n y C18 C19 ASW doub 99 n y C20 C19 ASW sing 100 n y C1 H1 ASW sing 101 n n C1 H2 ASW sing 102 n n C1 H3 ASW sing 103 n n C4 H4 ASW sing 104 n n N6 H5 ASW sing 105 n n C8 H6 ASW sing 106 n n C8 H7 ASW sing 107 n n C8 H8 ASW sing 108 n n C11 H9 ASW sing 109 n n C12 H10 ASW sing 110 n n N14 H11 ASW sing 111 n n C17 H12 ASW sing 112 n n C18 H13 ASW sing 113 n n C19 H14 ASW sing 114 n n C20 H15 ASW sing 115 n n C24 H16 ASW sing 116 n n C25 H17 ASW sing 117 n n C26 H18 ASW sing 118 n n C27 H19 ASW sing 119 n n # _atom_sites.entry_id 8JEM _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ASW A 1 501 501 ASW ASW . F 3 PGT A 1 502 601 PGT PGT . G 4 LMT A 1 503 602 LMT LMT . H 5 DGA A 1 504 603 DGA DGA . I 4 LMT A 1 505 604 LMT LMT . J 4 LMT A 1 506 605 LMT LMT . K 4 LMT A 1 507 701 LMT LMT . L 4 LMT A 1 508 504 LMT LMT . M 4 LMT A 1 509 5 LMT LMT . N 4 LMT A 1 510 7 LMT LMT . O 3 PGT A 1 511 14 PGT PGT . P 2 ASW B 1 501 501 ASW ASW . Q 3 PGT B 1 502 502 PGT PGT . R 4 LMT B 1 503 503 LMT LMT . S 4 LMT B 1 504 505 LMT LMT . T 4 LMT B 1 505 506 LMT LMT . U 3 PGT B 1 506 507 PGT PGT . V 4 LMT B 1 507 508 LMT LMT . W 4 LMT B 1 508 509 LMT LMT . X 4 LMT B 1 509 510 LMT LMT . Y 4 LMT B 1 510 601 LMT LMT . Z 4 LMT B 1 511 602 LMT LMT . AA 4 LMT B 1 512 2 LMT LMT . BA 4 LMT B 1 513 4 LMT LMT . CA 4 LMT B 1 514 11 LMT LMT . DA 4 LMT B 1 515 12 LMT LMT . EA 4 LMT B 1 516 13 LMT LMT . FA 2 ASW C 1 501 501 ASW ASW . GA 3 PGT C 1 502 502 PGT PGT . HA 4 LMT C 1 503 503 LMT LMT . IA 4 LMT C 1 504 504 LMT LMT . JA 5 DGA C 1 505 505 DGA DGA . KA 4 LMT C 1 506 506 LMT LMT . LA 4 LMT C 1 507 601 LMT LMT . MA 4 LMT C 1 508 703 LMT LMT . NA 4 LMT C 1 509 9 LMT LMT . OA 4 LMT C 1 510 10 LMT LMT . PA 3 PGT C 1 511 15 PGT PGT . QA 2 ASW D 1 501 501 ASW ASW . RA 3 PGT D 1 502 601 PGT PGT . SA 4 LMT D 1 503 701 LMT LMT . TA 4 LMT D 1 504 702 LMT LMT . UA 4 LMT D 1 505 705 LMT LMT . VA 4 LMT D 1 506 706 LMT LMT . WA 3 PGT D 1 507 707 PGT PGT . XA 4 LMT D 1 508 708 LMT LMT . YA 4 LMT D 1 509 709 LMT LMT . ZA 4 LMT D 1 510 801 LMT LMT . AB 4 LMT D 1 511 802 LMT LMT . BB 4 LMT D 1 512 1 LMT LMT . CB 4 LMT D 1 513 3 LMT LMT . DB 4 LMT D 1 514 6 LMT LMT . EB 4 LMT D 1 515 8 LMT LMT . FB 4 LMT D 1 516 16 LMT LMT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ASW . . . QA 2 98.544 123.335 137.939 1 78.31 ? C1 ASW 501 D 1 HETATM 2 O O2 ASW . . . QA 2 99.177 123.896 136.815 1 72.58 ? O2 ASW 501 D 1 HETATM 3 C C3 ASW . . . QA 2 98.758 125.12 136.393 1 73.17 ? C3 ASW 501 D 1 HETATM 4 C C4 ASW . . . QA 2 97.526 125.268 135.733 1 76.71 ? C4 ASW 501 D 1 HETATM 5 C C5 ASW . . . QA 2 97.069 126.521 135.289 1 69.64 ? C5 ASW 501 D 1 HETATM 6 N N6 ASW . . . QA 2 95.813 126.69 134.606 1 71.49 ? N6 ASW 501 D 1 HETATM 7 S S7 ASW . . . QA 2 94.877 128.043 134.462 1 98.18 ? S7 ASW 501 D 1 HETATM 8 C C8 ASW . . . QA 2 93.909 127.884 133.082 1 78.48 ? C8 ASW 501 D 1 HETATM 9 O O9 ASW . . . QA 2 93.979 128.092 135.547 1 81.29 ? O9 ASW 501 D 1 HETATM 10 O O10 ASW . . . QA 2 95.708 129.155 134.216 1 88.43 ? O10 ASW 501 D 1 HETATM 11 C C11 ASW . . . QA 2 97.907 127.602 135.532 1 71.64 ? C11 ASW 501 D 1 HETATM 12 C C12 ASW . . . QA 2 99.128 127.445 136.187 1 77.13 ? C12 ASW 501 D 1 HETATM 13 C C13 ASW . . . QA 2 99.6 126.227 136.637 1 72.52 ? C13 ASW 501 D 1 HETATM 14 N N14 ASW . . . QA 2 100.847 126.102 137.311 1 74.71 ? N14 ASW 501 D 1 HETATM 15 C C15 ASW . . . QA 2 101.68 127.142 137.893 1 77.47 ? C15 ASW 501 D 1 HETATM 16 C C16 ASW . . . QA 2 103.024 127.286 137.512 1 82.96 ? C16 ASW 501 D 1 HETATM 17 C C17 ASW . . . QA 2 103.631 126.435 136.547 1 80.05 ? C17 ASW 501 D 1 HETATM 18 C C18 ASW . . . QA 2 104.934 126.6 136.195 1 77.49 ? C18 ASW 501 D 1 HETATM 19 C C19 ASW . . . QA 2 105.725 127.622 136.778 1 77.35 ? C19 ASW 501 D 1 HETATM 20 C C20 ASW . . . QA 2 105.198 128.456 137.699 1 79.06 ? C20 ASW 501 D 1 HETATM 21 C C21 ASW . . . QA 2 103.823 128.303 138.086 1 81.11 ? C21 ASW 501 D 1 HETATM 22 N N22 ASW . . . QA 2 103.371 129.174 139.01 1 79.72 ? N22 ASW 501 D 1 HETATM 23 C C23 ASW . . . QA 2 102.083 129.04 139.382 1 72.81 ? C23 ASW 501 D 1 HETATM 24 C C24 ASW . . . QA 2 101.624 129.976 140.366 1 77.56 ? C24 ASW 501 D 1 HETATM 25 C C25 ASW . . . QA 2 100.347 129.913 140.799 1 78.73 ? C25 ASW 501 D 1 HETATM 26 C C26 ASW . . . QA 2 99.465 128.931 140.285 1 82.02 ? C26 ASW 501 D 1 HETATM 27 C C27 ASW . . . QA 2 99.878 128.036 139.356 1 77.91 ? C27 ASW 501 D 1 HETATM 28 C C28 ASW . . . QA 2 101.21 128.052 138.86 1 71.56 ? C28 ASW 501 D 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 28 #