data_8JEM
#
_model_server_result.job_id            64axhQd_X8lm6k9-jyaWdw 
_model_server_result.datetime_utc      '2024-11-15 15:33:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jem 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"JA","auth_seq_id":505}' 
#
_entry.id    8JEM 
#
_exptl.entry_id    8JEM 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              625.018 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIACYL GLYCEROL' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8JEM 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JEM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 JA N N 
#
_chem_comp.formula           'C39 H76 O5' 
_chem_comp.formula_weight    625.018 
_chem_comp.id                DGA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIACYL GLYCEROL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CA1 CA2 DGA sing 133 n n 
CA1 OA1 DGA doub 134 n n 
CA1 OG1 DGA sing 135 n n 
CA2 CA3 DGA sing 136 n n 
CA2 HA21 DGA sing 137 n n 
CA2 HA22 DGA sing 138 n n 
CA3 CA4 DGA sing 139 n n 
CA3 HA31 DGA sing 140 n n 
CA3 HA32 DGA sing 141 n n 
CA4 CA5 DGA sing 142 n n 
CA4 HA41 DGA sing 143 n n 
CA4 HA42 DGA sing 144 n n 
CA5 CA6 DGA sing 145 n n 
CA5 HA51 DGA sing 146 n n 
CA5 HA52 DGA sing 147 n n 
CA6 CA7 DGA sing 148 n n 
CA6 HA61 DGA sing 149 n n 
CA6 HA62 DGA sing 150 n n 
CA7 CA8 DGA sing 151 n n 
CA7 HA71 DGA sing 152 n n 
CA7 HA72 DGA sing 153 n n 
CA8 CA9 DGA sing 154 n n 
CA8 HA81 DGA sing 155 n n 
CA8 HA82 DGA sing 156 n n 
CA9 CAA DGA sing 157 n n 
CA9 HA91 DGA sing 158 n n 
CA9 HA92 DGA sing 159 n n 
CAA CBA DGA sing 160 n n 
CAA HAT1 DGA sing 161 n n 
CAA HAT2 DGA sing 162 n n 
CBA CCA DGA sing 163 n n 
CBA HAE1 DGA sing 164 n n 
CBA HAE2 DGA sing 165 n n 
CCA CDA DGA sing 166 n n 
CCA HAW1 DGA sing 167 n n 
CCA HAW2 DGA sing 168 n n 
CDA CEA DGA sing 169 n n 
CDA HAH1 DGA sing 170 n n 
CDA HAH2 DGA sing 171 n n 
CEA CFA DGA sing 172 n n 
CEA HAF1 DGA sing 173 n n 
CEA HAF2 DGA sing 174 n n 
CFA CGA DGA sing 175 n n 
CFA HAN1 DGA sing 176 n n 
CFA HAN2 DGA sing 177 n n 
CGA CHA DGA sing 178 n n 
CGA HAS1 DGA sing 179 n n 
CGA HAS2 DGA sing 180 n n 
CHA CIA DGA sing 181 n n 
CHA HAV1 DGA sing 182 n n 
CHA HAV2 DGA sing 183 n n 
CIA HAG1 DGA sing 184 n n 
CIA HAG2 DGA sing 185 n n 
CIA HAG3 DGA sing 186 n n 
CB1 CB2 DGA sing 187 n n 
CB1 OB1 DGA doub 188 n n 
CB1 OG2 DGA sing 189 n n 
CB2 CB3 DGA sing 190 n n 
CB2 HB21 DGA sing 191 n n 
CB2 HB22 DGA sing 192 n n 
CB3 CB4 DGA sing 193 n n 
CB3 HB31 DGA sing 194 n n 
CB3 HB32 DGA sing 195 n n 
CB4 CB5 DGA sing 196 n n 
CB4 HB41 DGA sing 197 n n 
CB4 HB42 DGA sing 198 n n 
CB5 CB6 DGA sing 199 n n 
CB5 HB51 DGA sing 200 n n 
CB5 HB52 DGA sing 201 n n 
CB6 CB7 DGA sing 202 n n 
CB6 HB61 DGA sing 203 n n 
CB6 HB62 DGA sing 204 n n 
CB7 CB8 DGA sing 205 n n 
CB7 HB71 DGA sing 206 n n 
CB7 HB72 DGA sing 207 n n 
CB8 CB9 DGA sing 208 n n 
CB8 HB81 DGA sing 209 n n 
CB8 HB82 DGA sing 210 n n 
CB9 CAB DGA sing 211 n n 
CB9 HB91 DGA sing 212 n n 
CB9 HB92 DGA sing 213 n n 
CAB CBB DGA sing 214 n n 
CAB HBT1 DGA sing 215 n n 
CAB HBT2 DGA sing 216 n n 
CBB CCB DGA sing 217 n n 
CBB HBE1 DGA sing 218 n n 
CBB HBE2 DGA sing 219 n n 
CCB CDB DGA sing 220 n n 
CCB HBW1 DGA sing 221 n n 
CCB HBW2 DGA sing 222 n n 
CDB CEB DGA sing 223 n n 
CDB HBH1 DGA sing 224 n n 
CDB HBH2 DGA sing 225 n n 
CEB CFB DGA sing 226 n n 
CEB HBF1 DGA sing 227 n n 
CEB HBF2 DGA sing 228 n n 
CFB CGB DGA sing 229 n n 
CFB HBN1 DGA sing 230 n n 
CFB HBN2 DGA sing 231 n n 
CGB CHB DGA sing 232 n n 
CGB HBS1 DGA sing 233 n n 
CGB HBS2 DGA sing 234 n n 
CHB CIB DGA sing 235 n n 
CHB HBV1 DGA sing 236 n n 
CHB HBV2 DGA sing 237 n n 
CIB HBG1 DGA sing 238 n n 
CIB HBG2 DGA sing 239 n n 
CIB HBG3 DGA sing 240 n n 
OG1 CG1 DGA sing 241 n n 
CG1 CG2 DGA sing 242 n n 
CG1 HG11 DGA sing 243 n n 
CG1 HG12 DGA sing 244 n n 
CG2 OG2 DGA sing 245 n n 
CG2 CG3 DGA sing 246 n n 
CG2 HG2 DGA sing 247 n n 
CG3 OXT DGA sing 248 n n 
CG3 HG31 DGA sing 249 n n 
CG3 HG32 DGA sing 250 n n 
OXT HXT DGA sing 251 n n 
#
_atom_sites.entry_id                     8JEM 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ASW A 1 501 501 ASW ASW . 
F 3 PGT A 1 502 601 PGT PGT . 
G 4 LMT A 1 503 602 LMT LMT . 
H 5 DGA A 1 504 603 DGA DGA . 
I 4 LMT A 1 505 604 LMT LMT . 
J 4 LMT A 1 506 605 LMT LMT . 
K 4 LMT A 1 507 701 LMT LMT . 
L 4 LMT A 1 508 504 LMT LMT . 
M 4 LMT A 1 509 5 LMT LMT . 
N 4 LMT A 1 510 7 LMT LMT . 
O 3 PGT A 1 511 14 PGT PGT . 
P 2 ASW B 1 501 501 ASW ASW . 
Q 3 PGT B 1 502 502 PGT PGT . 
R 4 LMT B 1 503 503 LMT LMT . 
S 4 LMT B 1 504 505 LMT LMT . 
T 4 LMT B 1 505 506 LMT LMT . 
U 3 PGT B 1 506 507 PGT PGT . 
V 4 LMT B 1 507 508 LMT LMT . 
W 4 LMT B 1 508 509 LMT LMT . 
X 4 LMT B 1 509 510 LMT LMT . 
Y 4 LMT B 1 510 601 LMT LMT . 
Z 4 LMT B 1 511 602 LMT LMT . 
AA 4 LMT B 1 512 2 LMT LMT . 
BA 4 LMT B 1 513 4 LMT LMT . 
CA 4 LMT B 1 514 11 LMT LMT . 
DA 4 LMT B 1 515 12 LMT LMT . 
EA 4 LMT B 1 516 13 LMT LMT . 
FA 2 ASW C 1 501 501 ASW ASW . 
GA 3 PGT C 1 502 502 PGT PGT . 
HA 4 LMT C 1 503 503 LMT LMT . 
IA 4 LMT C 1 504 504 LMT LMT . 
JA 5 DGA C 1 505 505 DGA DGA . 
KA 4 LMT C 1 506 506 LMT LMT . 
LA 4 LMT C 1 507 601 LMT LMT . 
MA 4 LMT C 1 508 703 LMT LMT . 
NA 4 LMT C 1 509 9 LMT LMT . 
OA 4 LMT C 1 510 10 LMT LMT . 
PA 3 PGT C 1 511 15 PGT PGT . 
QA 2 ASW D 1 501 501 ASW ASW . 
RA 3 PGT D 1 502 601 PGT PGT . 
SA 4 LMT D 1 503 701 LMT LMT . 
TA 4 LMT D 1 504 702 LMT LMT . 
UA 4 LMT D 1 505 705 LMT LMT . 
VA 4 LMT D 1 506 706 LMT LMT . 
WA 3 PGT D 1 507 707 PGT PGT . 
XA 4 LMT D 1 508 708 LMT LMT . 
YA 4 LMT D 1 509 709 LMT LMT . 
ZA 4 LMT D 1 510 801 LMT LMT . 
AB 4 LMT D 1 511 802 LMT LMT . 
BB 4 LMT D 1 512 1 LMT LMT . 
CB 4 LMT D 1 513 3 LMT LMT . 
DB 4 LMT D 1 514 6 LMT LMT . 
EB 4 LMT D 1 515 8 LMT LMT . 
FB 4 LMT D 1 516 16 LMT LMT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CA1 DGA . . . JA 5 126.991 115.648 134.75 1 102.27 ? CA1 DGA 505 C 1 
HETATM 2 C CA2 DGA . . . JA 5 127.099 114.598 133.688 1 98.4 ? CA2 DGA 505 C 1 
HETATM 3 C CA3 DGA . . . JA 5 127.685 115.129 132.389 1 94.74 ? CA3 DGA 505 C 1 
HETATM 4 C CA4 DGA . . . JA 5 127.82 114.056 131.324 1 98.2 ? CA4 DGA 505 C 1 
HETATM 5 C CA5 DGA . . . JA 5 128.508 114.539 130.062 1 100.28 ? CA5 DGA 505 C 1 
HETATM 6 C CA6 DGA . . . JA 5 129.877 115.145 130.308 1 102.87 ? CA6 DGA 505 C 1 
HETATM 7 C CA7 DGA . . . JA 5 130.245 116.249 129.335 1 104.35 ? CA7 DGA 505 C 1 
HETATM 8 C CA8 DGA . . . JA 5 129.976 115.903 127.882 1 101.28 ? CA8 DGA 505 C 1 
HETATM 9 C CA9 DGA . . . JA 5 130.945 114.892 127.298 1 102.54 ? CA9 DGA 505 C 1 
HETATM 10 C CAA DGA . . . JA 5 130.659 114.54 125.85 1 103.51 ? CAA DGA 505 C 1 
HETATM 11 C CBA DGA . . . JA 5 130.235 115.727 125.002 1 101.62 ? CBA DGA 505 C 1 
HETATM 12 C CCA DGA . . . JA 5 131.35 116.31 124.152 1 99.99 ? CCA DGA 505 C 1 
HETATM 13 C CDA DGA . . . JA 5 132.308 117.209 124.916 1 103.34 ? CDA DGA 505 C 1 
HETATM 14 C CEA DGA . . . JA 5 133.627 117.458 124.202 1 103.11 ? CEA DGA 505 C 1 
HETATM 15 C CFA DGA . . . JA 5 133.62 118.676 123.294 1 105.06 ? CFA DGA 505 C 1 
HETATM 16 C CGA DGA . . . JA 5 133.165 118.387 121.873 1 107.11 ? CGA DGA 505 C 1 
HETATM 17 C CHA DGA . . . JA 5 132.221 119.427 121.297 1 105.79 ? CHA DGA 505 C 1 
HETATM 18 C CIA DGA . . . JA 5 131.787 119.116 119.886 1 98.63 ? CIA DGA 505 C 1 
HETATM 19 O OA1 DGA . . . JA 5 127.63 116.663 134.776 1 105.01 ? OA1 DGA 505 C 1 
HETATM 20 C CB1 DGA . . . JA 5 122.682 112.393 135.914 1 103.29 ? CB1 DGA 505 C 1 
HETATM 21 C CB2 DGA . . . JA 5 122.456 111.256 134.969 1 101.38 ? CB2 DGA 505 C 1 
HETATM 22 C CB3 DGA . . . JA 5 123.125 111.459 133.617 1 96.25 ? CB3 DGA 505 C 1 
HETATM 23 C CB4 DGA . . . JA 5 123.261 110.174 132.818 1 99.04 ? CB4 DGA 505 C 1 
HETATM 24 C CB5 DGA . . . JA 5 122.012 109.783 132.052 1 99.62 ? CB5 DGA 505 C 1 
HETATM 25 C CB6 DGA . . . JA 5 121.196 108.693 132.721 1 98.84 ? CB6 DGA 505 C 1 
HETATM 26 C CB7 DGA . . . JA 5 121.7 107.29 132.441 1 98.76 ? CB7 DGA 505 C 1 
HETATM 27 C CB8 DGA . . . JA 5 121.494 106.84 131.007 1 98.94 ? CB8 DGA 505 C 1 
HETATM 28 C CB9 DGA . . . JA 5 120.116 106.269 130.734 1 98.67 ? CB9 DGA 505 C 1 
HETATM 29 C CAB DGA . . . JA 5 119.819 106.062 129.26 1 104.1 ? CAB DGA 505 C 1 
HETATM 30 C CBB DGA . . . JA 5 120.55 104.883 128.642 1 102.39 ? CBB DGA 505 C 1 
HETATM 31 C CCB DGA . . . JA 5 119.626 103.798 128.112 1 102.58 ? CCB DGA 505 C 1 
HETATM 32 C CDB DGA . . . JA 5 118.813 103.102 129.192 1 105.78 ? CDB DGA 505 C 1 
HETATM 33 C CEB DGA . . . JA 5 117.65 102.28 128.661 1 103.14 ? CEB DGA 505 C 1 
HETATM 34 C CFB DGA . . . JA 5 117.872 100.778 128.72 1 100.9 ? CFB DGA 505 C 1 
HETATM 35 C CGB DGA . . . JA 5 118.904 100.268 127.727 1 104.04 ? CGB DGA 505 C 1 
HETATM 36 C CHB DGA . . . JA 5 118.684 100.731 126.299 1 100.31 ? CHB DGA 505 C 1 
HETATM 37 C CIB DGA . . . JA 5 119.657 100.122 125.318 1 97.68 ? CIB DGA 505 C 1 
HETATM 38 O OB1 DGA . . . JA 5 121.988 112.649 136.858 1 105.28 ? OB1 DGA 505 C 1 
HETATM 39 O OG1 DGA . . . JA 5 126.09 115.315 135.672 1 104.75 ? OG1 DGA 505 C 1 
HETATM 40 C CG1 DGA . . . JA 5 124.717 115.269 135.246 1 102.82 ? CG1 DGA 505 C 1 
HETATM 41 C CG2 DGA . . . JA 5 123.949 114.404 136.205 1 101.89 ? CG2 DGA 505 C 1 
HETATM 42 O OG2 DGA . . . JA 5 123.771 113.097 135.576 1 101.28 ? OG2 DGA 505 C 1 
HETATM 43 C CG3 DGA . . . JA 5 124.701 114.171 137.489 1 101.92 ? CG3 DGA 505 C 1 
HETATM 44 O OXT DGA . . . JA 5 125.576 115.25 137.787 1 103.45 ? OXT DGA 505 C 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           44 
#