data_8JEM # _model_server_result.job_id 1GwCmlsBzOEEsrMu8KH1XA _model_server_result.datetime_utc '2024-11-15 15:40:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jem # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CA","auth_seq_id":514}' # _entry.id 8JEM # _exptl.entry_id 8JEM _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 510.615 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 40 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JEM _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JEM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 V N N ? 4 W N N ? 4 X N N ? 4 Y N N ? 4 Z N N ? 4 AA N N ? 4 BA N N ? 4 CA N N ? 4 DA N N ? 4 EA N N ? 4 HA N N ? 4 IA N N ? 4 KA N N ? 4 LA N N ? 4 MA N N ? 4 NA N N ? 4 OA N N ? 4 SA N N ? 4 TA N N ? 4 UA N N ? 4 VA N N ? 4 XA N N ? 4 YA N N ? 4 ZA N N ? 4 AB N N ? 4 BB N N ? 4 CB N N ? 4 DB N N ? 4 EB N N ? 4 FB N N # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 361 n n C1B O1B LMT sing 362 n n C1B O5B LMT sing 363 n n C1B H1B LMT sing 364 n n C2B C3B LMT sing 365 n n C2B O2B LMT sing 366 n n C2B H2B LMT sing 367 n n C3B C4B LMT sing 368 n n C3B O3B LMT sing 369 n n C3B H3B LMT sing 370 n n C4B C5B LMT sing 371 n n C4B O4' LMT sing 372 n n C4B H4B LMT sing 373 n n C5B C6B LMT sing 374 n n C5B O5B LMT sing 375 n n C5B H5B LMT sing 376 n n C6B O6B LMT sing 377 n n C6B "H6'2" LMT sing 378 n n C6B "H6'1" LMT sing 379 n n O1B C4' LMT sing 380 n n O2B H2O1 LMT sing 381 n n O3B H3O1 LMT sing 382 n n O4' H4O1 LMT sing 383 n n O6B H6B LMT sing 384 n n C1' C2' LMT sing 385 n n C1' O1' LMT sing 386 n n C1' O5' LMT sing 387 n n C1' H1' LMT sing 388 n n C2' C3' LMT sing 389 n n C2' O2' LMT sing 390 n n C2' H2' LMT sing 391 n n C3' C4' LMT sing 392 n n C3' O3' LMT sing 393 n n C3' H3' LMT sing 394 n n C4' C5' LMT sing 395 n n C4' H4' LMT sing 396 n n C5' C6' LMT sing 397 n n C5' O5' LMT sing 398 n n C5' H5' LMT sing 399 n n C6' O6' LMT sing 400 n n C6' H6D LMT sing 401 n n C6' H6E LMT sing 402 n n O1' C1 LMT sing 403 n n O2' H2O2 LMT sing 404 n n O3' H3O2 LMT sing 405 n n O6' H6' LMT sing 406 n n C1 C2 LMT sing 407 n n C1 H12 LMT sing 408 n n C1 H11 LMT sing 409 n n C2 C3 LMT sing 410 n n C2 H22 LMT sing 411 n n C2 H21 LMT sing 412 n n C3 C4 LMT sing 413 n n C3 H32 LMT sing 414 n n C3 H31 LMT sing 415 n n C4 C5 LMT sing 416 n n C4 H42 LMT sing 417 n n C4 H41 LMT sing 418 n n C5 C6 LMT sing 419 n n C5 H52 LMT sing 420 n n C5 H51 LMT sing 421 n n C6 C7 LMT sing 422 n n C6 H62 LMT sing 423 n n C6 H61 LMT sing 424 n n C7 C8 LMT sing 425 n n C7 H72 LMT sing 426 n n C7 H71 LMT sing 427 n n C8 C9 LMT sing 428 n n C8 H82 LMT sing 429 n n C8 H81 LMT sing 430 n n C9 C10 LMT sing 431 n n C9 H92 LMT sing 432 n n C9 H91 LMT sing 433 n n C10 C11 LMT sing 434 n n C10 H102 LMT sing 435 n n C10 H101 LMT sing 436 n n C11 C12 LMT sing 437 n n C11 H112 LMT sing 438 n n C11 H111 LMT sing 439 n n C12 H123 LMT sing 440 n n C12 H122 LMT sing 441 n n C12 H121 LMT sing 442 n n # _atom_sites.entry_id 8JEM _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ASW A 1 501 501 ASW ASW . F 3 PGT A 1 502 601 PGT PGT . G 4 LMT A 1 503 602 LMT LMT . H 5 DGA A 1 504 603 DGA DGA . I 4 LMT A 1 505 604 LMT LMT . J 4 LMT A 1 506 605 LMT LMT . K 4 LMT A 1 507 701 LMT LMT . L 4 LMT A 1 508 504 LMT LMT . M 4 LMT A 1 509 5 LMT LMT . N 4 LMT A 1 510 7 LMT LMT . O 3 PGT A 1 511 14 PGT PGT . P 2 ASW B 1 501 501 ASW ASW . Q 3 PGT B 1 502 502 PGT PGT . R 4 LMT B 1 503 503 LMT LMT . S 4 LMT B 1 504 505 LMT LMT . T 4 LMT B 1 505 506 LMT LMT . U 3 PGT B 1 506 507 PGT PGT . V 4 LMT B 1 507 508 LMT LMT . W 4 LMT B 1 508 509 LMT LMT . X 4 LMT B 1 509 510 LMT LMT . Y 4 LMT B 1 510 601 LMT LMT . Z 4 LMT B 1 511 602 LMT LMT . AA 4 LMT B 1 512 2 LMT LMT . BA 4 LMT B 1 513 4 LMT LMT . CA 4 LMT B 1 514 11 LMT LMT . DA 4 LMT B 1 515 12 LMT LMT . EA 4 LMT B 1 516 13 LMT LMT . FA 2 ASW C 1 501 501 ASW ASW . GA 3 PGT C 1 502 502 PGT PGT . HA 4 LMT C 1 503 503 LMT LMT . IA 4 LMT C 1 504 504 LMT LMT . JA 5 DGA C 1 505 505 DGA DGA . KA 4 LMT C 1 506 506 LMT LMT . LA 4 LMT C 1 507 601 LMT LMT . MA 4 LMT C 1 508 703 LMT LMT . NA 4 LMT C 1 509 9 LMT LMT . OA 4 LMT C 1 510 10 LMT LMT . PA 3 PGT C 1 511 15 PGT PGT . QA 2 ASW D 1 501 501 ASW ASW . RA 3 PGT D 1 502 601 PGT PGT . SA 4 LMT D 1 503 701 LMT LMT . TA 4 LMT D 1 504 702 LMT LMT . UA 4 LMT D 1 505 705 LMT LMT . VA 4 LMT D 1 506 706 LMT LMT . WA 3 PGT D 1 507 707 PGT PGT . XA 4 LMT D 1 508 708 LMT LMT . YA 4 LMT D 1 509 709 LMT LMT . ZA 4 LMT D 1 510 801 LMT LMT . AB 4 LMT D 1 511 802 LMT LMT . BB 4 LMT D 1 512 1 LMT LMT . CB 4 LMT D 1 513 3 LMT LMT . DB 4 LMT D 1 514 6 LMT LMT . EB 4 LMT D 1 515 8 LMT LMT . FB 4 LMT D 1 516 16 LMT LMT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . CA 4 144.609 129.925 105.039 1 149.92 ? C1B LMT 514 B 1 HETATM 2 C C2B LMT . . . CA 4 144.693 128.494 104.476 1 151.65 ? C2B LMT 514 B 1 HETATM 3 C C3B LMT . . . CA 4 146.161 128.03 104.418 1 151.67 ? C3B LMT 514 B 1 HETATM 4 C C4B LMT . . . CA 4 147.035 129.08 103.691 1 150.64 ? C4B LMT 514 B 1 HETATM 5 C C5B LMT . . . CA 4 146.8 130.448 104.362 1 150.83 ? C5B LMT 514 B 1 HETATM 6 C C6B LMT . . . CA 4 146.365 131.477 103.32 1 147.9 ? C6B LMT 514 B 1 HETATM 7 O O1B LMT . . . CA 4 143.737 129.932 106.127 1 150.03 ? O1B LMT 514 B 1 HETATM 8 O O2B LMT . . . CA 4 143.965 127.688 105.31 1 152.06 ? O2B LMT 514 B 1 HETATM 9 O O3B LMT . . . CA 4 146.276 126.78 103.866 1 148.83 ? O3B LMT 514 B 1 HETATM 10 O O4' LMT . . . CA 4 148.368 128.748 103.786 1 149.97 ? O4' LMT 514 B 1 HETATM 11 O O5B LMT . . . CA 4 145.872 130.38 105.42 1 150.93 ? O5B LMT 514 B 1 HETATM 12 O O6B LMT . . . CA 4 146.108 132.683 103.92 1 146.82 ? O6B LMT 514 B 1 HETATM 13 C C1' LMT . . . CA 4 140.895 132.938 105.931 1 150.61 ? C1' LMT 514 B 1 HETATM 14 C C2' LMT . . . CA 4 142.338 133.395 105.564 1 150.89 ? C2' LMT 514 B 1 HETATM 15 C C3' LMT . . . CA 4 143.419 132.305 105.82 1 152.47 ? C3' LMT 514 B 1 HETATM 16 C C4' LMT . . . CA 4 142.787 130.977 106.245 1 152.35 ? C4' LMT 514 B 1 HETATM 17 C C5' LMT . . . CA 4 141.651 130.765 105.226 1 152.49 ? C5' LMT 514 B 1 HETATM 18 C C6' LMT . . . CA 4 141.154 129.347 105.134 1 148.41 ? C6' LMT 514 B 1 HETATM 19 O O1' LMT . . . CA 4 140.692 132.97 107.284 1 148.48 ? O1' LMT 514 B 1 HETATM 20 O O2' LMT . . . CA 4 142.359 133.735 104.231 1 146.61 ? O2' LMT 514 B 1 HETATM 21 O O3' LMT . . . CA 4 144.3 132.712 106.77 1 151.79 ? O3' LMT 514 B 1 HETATM 22 O O5' LMT . . . CA 4 140.555 131.616 105.48 1 153.43 ? O5' LMT 514 B 1 HETATM 23 O O6' LMT . . . CA 4 140.238 129.205 106.139 1 148.11 ? O6' LMT 514 B 1 HETATM 24 C C1 LMT . . . CA 4 139.443 132.465 107.687 1 148.04 ? C1 LMT 514 B 1 HETATM 25 C C2 LMT . . . CA 4 139.346 132.8 109.142 1 146.46 ? C2 LMT 514 B 1 HETATM 26 C C3 LMT . . . CA 4 140.463 132.323 110.003 1 146.81 ? C3 LMT 514 B 1 HETATM 27 C C4 LMT . . . CA 4 140.113 132.686 111.418 1 147.21 ? C4 LMT 514 B 1 HETATM 28 C C5 LMT . . . CA 4 139.011 131.82 111.914 1 147.87 ? C5 LMT 514 B 1 HETATM 29 C C6 LMT . . . CA 4 139.513 130.699 112.759 1 148.27 ? C6 LMT 514 B 1 HETATM 30 C C7 LMT . . . CA 4 140.249 131.246 113.943 1 147.01 ? C7 LMT 514 B 1 HETATM 31 C C8 LMT . . . CA 4 140.272 130.215 115.013 1 145.86 ? C8 LMT 514 B 1 HETATM 32 C C9 LMT . . . CA 4 139.632 130.649 116.288 1 144.79 ? C9 LMT 514 B 1 HETATM 33 C C10 LMT . . . CA 4 140.472 130.112 117.408 1 144.07 ? C10 LMT 514 B 1 HETATM 34 C C11 LMT . . . CA 4 139.92 130.496 118.74 1 144.05 ? C11 LMT 514 B 1 HETATM 35 C C12 LMT . . . CA 4 138.641 129.79 119.028 1 144.73 ? C12 LMT 514 B 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 211 _model_server_stats.query_time_ms 424 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #