data_8JES
#
_model_server_result.job_id            1s6299JWqyLssffRteCivA 
_model_server_result.datetime_utc      '2025-03-06 03:23:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jes 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"IA","auth_seq_id":501}' 
#
_entry.id    8JES 
#
_exptl.entry_id    8JES 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              625.018 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIACYL GLYCEROL' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8JES 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JES 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 IA N N 
#
_chem_comp.formula           'C39 H76 O5' 
_chem_comp.formula_weight    625.018 
_chem_comp.id                DGA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIACYL GLYCEROL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CA1 CA2 DGA sing 83 n n 
CA1 OA1 DGA doub 84 n n 
CA1 OG1 DGA sing 85 n n 
CA2 CA3 DGA sing 86 n n 
CA2 HA21 DGA sing 87 n n 
CA2 HA22 DGA sing 88 n n 
CA3 CA4 DGA sing 89 n n 
CA3 HA31 DGA sing 90 n n 
CA3 HA32 DGA sing 91 n n 
CA4 CA5 DGA sing 92 n n 
CA4 HA41 DGA sing 93 n n 
CA4 HA42 DGA sing 94 n n 
CA5 CA6 DGA sing 95 n n 
CA5 HA51 DGA sing 96 n n 
CA5 HA52 DGA sing 97 n n 
CA6 CA7 DGA sing 98 n n 
CA6 HA61 DGA sing 99 n n 
CA6 HA62 DGA sing 100 n n 
CA7 CA8 DGA sing 101 n n 
CA7 HA71 DGA sing 102 n n 
CA7 HA72 DGA sing 103 n n 
CA8 CA9 DGA sing 104 n n 
CA8 HA81 DGA sing 105 n n 
CA8 HA82 DGA sing 106 n n 
CA9 CAA DGA sing 107 n n 
CA9 HA91 DGA sing 108 n n 
CA9 HA92 DGA sing 109 n n 
CAA CBA DGA sing 110 n n 
CAA HAT1 DGA sing 111 n n 
CAA HAT2 DGA sing 112 n n 
CBA CCA DGA sing 113 n n 
CBA HAE1 DGA sing 114 n n 
CBA HAE2 DGA sing 115 n n 
CCA CDA DGA sing 116 n n 
CCA HAW1 DGA sing 117 n n 
CCA HAW2 DGA sing 118 n n 
CDA CEA DGA sing 119 n n 
CDA HAH1 DGA sing 120 n n 
CDA HAH2 DGA sing 121 n n 
CEA CFA DGA sing 122 n n 
CEA HAF1 DGA sing 123 n n 
CEA HAF2 DGA sing 124 n n 
CFA CGA DGA sing 125 n n 
CFA HAN1 DGA sing 126 n n 
CFA HAN2 DGA sing 127 n n 
CGA CHA DGA sing 128 n n 
CGA HAS1 DGA sing 129 n n 
CGA HAS2 DGA sing 130 n n 
CHA CIA DGA sing 131 n n 
CHA HAV1 DGA sing 132 n n 
CHA HAV2 DGA sing 133 n n 
CIA HAG1 DGA sing 134 n n 
CIA HAG2 DGA sing 135 n n 
CIA HAG3 DGA sing 136 n n 
CB1 CB2 DGA sing 137 n n 
CB1 OB1 DGA doub 138 n n 
CB1 OG2 DGA sing 139 n n 
CB2 CB3 DGA sing 140 n n 
CB2 HB21 DGA sing 141 n n 
CB2 HB22 DGA sing 142 n n 
CB3 CB4 DGA sing 143 n n 
CB3 HB31 DGA sing 144 n n 
CB3 HB32 DGA sing 145 n n 
CB4 CB5 DGA sing 146 n n 
CB4 HB41 DGA sing 147 n n 
CB4 HB42 DGA sing 148 n n 
CB5 CB6 DGA sing 149 n n 
CB5 HB51 DGA sing 150 n n 
CB5 HB52 DGA sing 151 n n 
CB6 CB7 DGA sing 152 n n 
CB6 HB61 DGA sing 153 n n 
CB6 HB62 DGA sing 154 n n 
CB7 CB8 DGA sing 155 n n 
CB7 HB71 DGA sing 156 n n 
CB7 HB72 DGA sing 157 n n 
CB8 CB9 DGA sing 158 n n 
CB8 HB81 DGA sing 159 n n 
CB8 HB82 DGA sing 160 n n 
CB9 CAB DGA sing 161 n n 
CB9 HB91 DGA sing 162 n n 
CB9 HB92 DGA sing 163 n n 
CAB CBB DGA sing 164 n n 
CAB HBT1 DGA sing 165 n n 
CAB HBT2 DGA sing 166 n n 
CBB CCB DGA sing 167 n n 
CBB HBE1 DGA sing 168 n n 
CBB HBE2 DGA sing 169 n n 
CCB CDB DGA sing 170 n n 
CCB HBW1 DGA sing 171 n n 
CCB HBW2 DGA sing 172 n n 
CDB CEB DGA sing 173 n n 
CDB HBH1 DGA sing 174 n n 
CDB HBH2 DGA sing 175 n n 
CEB CFB DGA sing 176 n n 
CEB HBF1 DGA sing 177 n n 
CEB HBF2 DGA sing 178 n n 
CFB CGB DGA sing 179 n n 
CFB HBN1 DGA sing 180 n n 
CFB HBN2 DGA sing 181 n n 
CGB CHB DGA sing 182 n n 
CGB HBS1 DGA sing 183 n n 
CGB HBS2 DGA sing 184 n n 
CHB CIB DGA sing 185 n n 
CHB HBV1 DGA sing 186 n n 
CHB HBV2 DGA sing 187 n n 
CIB HBG1 DGA sing 188 n n 
CIB HBG2 DGA sing 189 n n 
CIB HBG3 DGA sing 190 n n 
OG1 CG1 DGA sing 191 n n 
CG1 CG2 DGA sing 192 n n 
CG1 HG11 DGA sing 193 n n 
CG1 HG12 DGA sing 194 n n 
CG2 OG2 DGA sing 195 n n 
CG2 CG3 DGA sing 196 n n 
CG2 HG2 DGA sing 197 n n 
CG3 OXT DGA sing 198 n n 
CG3 HG31 DGA sing 199 n n 
CG3 HG32 DGA sing 200 n n 
OXT HXT DGA sing 201 n n 
#
_atom_sites.entry_id                     8JES 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PGT A 1 601 601 PGT PGT . 
F 3 LMT A 1 602 602 LMT LMT . 
G 4 DGA A 1 603 603 DGA DGA . 
H 3 LMT A 1 604 604 LMT LMT . 
I 3 LMT A 1 605 605 LMT LMT . 
J 3 LMT A 1 606 701 LMT LMT . 
K 3 LMT A 1 607 5 LMT LMT . 
L 3 LMT A 1 608 7 LMT LMT . 
M 2 PGT A 1 609 14 PGT PGT . 
N 2 PGT B 1 501 502 PGT PGT . 
O 3 LMT B 1 502 503 LMT LMT . 
P 3 LMT B 1 503 505 LMT LMT . 
Q 3 LMT B 1 504 506 LMT LMT . 
R 3 LMT B 1 505 509 LMT LMT . 
S 3 LMT B 1 506 510 LMT LMT . 
T 3 LMT B 1 507 601 LMT LMT . 
U 3 LMT B 1 508 602 LMT LMT . 
V 3 LMT B 1 509 2 LMT LMT . 
W 3 LMT B 1 510 4 LMT LMT . 
X 3 LMT B 1 511 11 LMT LMT . 
Y 3 LMT B 1 512 12 LMT LMT . 
Z 3 LMT B 1 513 13 LMT LMT . 
AA 2 PGT C 1 501 502 PGT PGT . 
BA 3 LMT C 1 502 503 LMT LMT . 
CA 3 LMT C 1 503 504 LMT LMT . 
DA 3 LMT C 1 504 506 LMT LMT . 
EA 3 LMT C 1 505 601 LMT LMT . 
FA 3 LMT C 1 506 9 LMT LMT . 
GA 3 LMT C 1 507 10 LMT LMT . 
HA 2 PGT C 1 508 15 PGT PGT . 
IA 4 DGA D 1 501 505 DGA DGA . 
JA 2 PGT D 1 502 601 PGT PGT . 
KA 3 LMT D 1 503 701 LMT LMT . 
LA 3 LMT D 1 504 702 LMT LMT . 
MA 3 LMT D 1 505 705 LMT LMT . 
NA 3 LMT D 1 506 709 LMT LMT . 
OA 3 LMT D 1 507 801 LMT LMT . 
PA 3 LMT D 1 508 802 LMT LMT . 
QA 3 LMT D 1 509 1 LMT LMT . 
RA 3 LMT D 1 510 3 LMT LMT . 
SA 3 LMT D 1 511 6 LMT LMT . 
TA 3 LMT D 1 512 8 LMT LMT . 
UA 3 LMT D 1 513 16 LMT LMT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CA1 DGA . . . IA 4 125.927 149.494 129.724 1 178.44 ? CA1 DGA 501 D 1 
HETATM 2 C CA2 DGA . . . IA 4 126.156 150.502 130.81 1 178.12 ? CA2 DGA 501 D 1 
HETATM 3 C CA3 DGA . . . IA 4 126.558 149.872 132.136 1 175.83 ? CA3 DGA 501 D 1 
HETATM 4 C CA4 DGA . . . IA 4 126.405 150.824 133.31 1 175.63 ? CA4 DGA 501 D 1 
HETATM 5 C CA5 DGA . . . IA 4 127.086 150.342 134.579 1 176.07 ? CA5 DGA 501 D 1 
HETATM 6 C CA6 DGA . . . IA 4 128.582 150.126 134.425 1 176.33 ? CA6 DGA 501 D 1 
HETATM 7 C CA7 DGA . . . IA 4 129.153 149.082 135.369 1 178.81 ? CA7 DGA 501 D 1 
HETATM 8 C CA8 DGA . . . IA 4 128.886 149.367 136.837 1 177.76 ? CA8 DGA 501 D 1 
HETATM 9 C CA9 DGA . . . IA 4 129.813 150.407 137.442 1 177.26 ? CA9 DGA 501 D 1 
HETATM 10 C CAA DGA . . . IA 4 129.464 150.78 138.873 1 177.63 ? CAA DGA 501 D 1 
HETATM 11 C CBA DGA . . . IA 4 129.263 149.585 139.79 1 177.32 ? CBA DGA 501 D 1 
HETATM 12 C CCA DGA . . . IA 4 130.521 149.152 140.526 1 177.62 ? CCA DGA 501 D 1 
HETATM 13 C CDA DGA . . . IA 4 131.375 148.155 139.758 1 179.28 ? CDA DGA 501 D 1 
HETATM 14 C CEA DGA . . . IA 4 132.818 148.082 140.233 1 179.55 ? CEA DGA 501 D 1 
HETATM 15 C CFA DGA . . . IA 4 133.114 146.902 141.146 1 176.94 ? CFA DGA 501 D 1 
HETATM 16 C CGA DGA . . . IA 4 132.804 147.16 142.611 1 176.31 ? CGA DGA 501 D 1 
HETATM 17 C CHA DGA . . . IA 4 131.431 146.689 143.053 1 177.66 ? CHA DGA 501 D 1 
HETATM 18 C CIA DGA . . . IA 4 131.181 146.897 144.526 1 175.67 ? CIA DGA 501 D 1 
HETATM 19 O OA1 DGA . . . IA 4 126.528 148.46 129.609 1 176.69 ? OA1 DGA 501 D 1 
HETATM 20 C CB1 DGA . . . IA 4 121.76 152.939 128.787 1 177.68 ? CB1 DGA 501 D 1 
HETATM 21 C CB2 DGA . . . IA 4 121.638 153.99 129.845 1 177.47 ? CB2 DGA 501 D 1 
HETATM 22 C CB3 DGA . . . IA 4 121.994 153.489 131.239 1 174.45 ? CB3 DGA 501 D 1 
HETATM 23 C CB4 DGA . . . IA 4 122.16 154.612 132.251 1 176.83 ? CB4 DGA 501 D 1 
HETATM 24 C CB5 DGA . . . IA 4 120.885 154.974 132.996 1 174.24 ? CB5 DGA 501 D 1 
HETATM 25 C CB6 DGA . . . IA 4 120.026 156.007 132.285 1 174.77 ? CB6 DGA 501 D 1 
HETATM 26 C CB7 DGA . . . IA 4 120.49 157.438 132.486 1 173.36 ? CB7 DGA 501 D 1 
HETATM 27 C CB8 DGA . . . IA 4 119.953 158.082 133.751 1 174.66 ? CB8 DGA 501 D 1 
HETATM 28 C CB9 DGA . . . IA 4 118.458 158.346 133.718 1 175.87 ? CB9 DGA 501 D 1 
HETATM 29 C CAB DGA . . . IA 4 117.855 158.624 135.085 1 180.21 ? CAB DGA 501 D 1 
HETATM 30 C CBB DGA . . . IA 4 118.607 159.671 135.89 1 178.45 ? CBB DGA 501 D 1 
HETATM 31 C CCB DGA . . . IA 4 117.746 160.844 136.327 1 178.85 ? CCB DGA 501 D 1 
HETATM 32 C CDB DGA . . . IA 4 117.233 161.692 135.174 1 178.18 ? CDB DGA 501 D 1 
HETATM 33 C CEB DGA . . . IA 4 115.983 162.492 135.505 1 177.32 ? CEB DGA 501 D 1 
HETATM 34 C CFB DGA . . . IA 4 116.218 163.989 135.629 1 176.82 ? CFB DGA 501 D 1 
HETATM 35 C CGB DGA . . . IA 4 117.131 164.378 136.78 1 178.04 ? CGB DGA 501 D 1 
HETATM 36 C CHB DGA . . . IA 4 116.657 163.903 138.141 1 176.51 ? CHB DGA 501 D 1 
HETATM 37 C CIB DGA . . . IA 4 117.646 164.191 139.245 1 176.36 ? CIB DGA 501 D 1 
HETATM 38 O OB1 DGA . . . IA 4 121.009 152.808 127.859 1 177.8 ? OB1 DGA 501 D 1 
HETATM 39 O OG1 DGA . . . IA 4 124.965 149.891 128.89 1 182.89 ? OG1 DGA 501 D 1 
HETATM 40 C CG1 DGA . . . IA 4 123.618 149.939 129.418 1 179.3 ? CG1 DGA 501 D 1 
HETATM 41 C CG2 DGA . . . IA 4 122.777 150.785 128.502 1 177.9 ? CG2 DGA 501 D 1 
HETATM 42 O OG2 DGA . . . IA 4 122.831 152.158 128.999 1 175.73 ? OG2 DGA 501 D 1 
HETATM 43 C CG3 DGA . . . IA 4 123.315 150.813 127.095 1 177.33 ? CG3 DGA 501 D 1 
HETATM 44 O OXT DGA . . . IA 4 124.182 149.716 126.84 1 180.97 ? OXT DGA 501 D 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    52 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           44 
#