data_8JF2 # _model_server_result.job_id b5Rn4eLGq8mHyq-cnPVj2A _model_server_result.datetime_utc '2025-03-06 03:22:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jf2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":501}' # _entry.id 8JF2 # _exptl.entry_id 8JF2 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 625.018 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIACYL GLYCEROL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JF2 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JF2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 N N N ? 5 Z N N # _chem_comp.formula 'C39 H76 O5' _chem_comp.formula_weight 625.018 _chem_comp.id DGA _chem_comp.mon_nstd_flag . _chem_comp.name 'DIACYL GLYCEROL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA1 CA2 DGA sing 83 n n CA1 OA1 DGA doub 84 n n CA1 OG1 DGA sing 85 n n CA2 CA3 DGA sing 86 n n CA2 HA21 DGA sing 87 n n CA2 HA22 DGA sing 88 n n CA3 CA4 DGA sing 89 n n CA3 HA31 DGA sing 90 n n CA3 HA32 DGA sing 91 n n CA4 CA5 DGA sing 92 n n CA4 HA41 DGA sing 93 n n CA4 HA42 DGA sing 94 n n CA5 CA6 DGA sing 95 n n CA5 HA51 DGA sing 96 n n CA5 HA52 DGA sing 97 n n CA6 CA7 DGA sing 98 n n CA6 HA61 DGA sing 99 n n CA6 HA62 DGA sing 100 n n CA7 CA8 DGA sing 101 n n CA7 HA71 DGA sing 102 n n CA7 HA72 DGA sing 103 n n CA8 CA9 DGA sing 104 n n CA8 HA81 DGA sing 105 n n CA8 HA82 DGA sing 106 n n CA9 CAA DGA sing 107 n n CA9 HA91 DGA sing 108 n n CA9 HA92 DGA sing 109 n n CAA CBA DGA sing 110 n n CAA HAT1 DGA sing 111 n n CAA HAT2 DGA sing 112 n n CBA CCA DGA sing 113 n n CBA HAE1 DGA sing 114 n n CBA HAE2 DGA sing 115 n n CCA CDA DGA sing 116 n n CCA HAW1 DGA sing 117 n n CCA HAW2 DGA sing 118 n n CDA CEA DGA sing 119 n n CDA HAH1 DGA sing 120 n n CDA HAH2 DGA sing 121 n n CEA CFA DGA sing 122 n n CEA HAF1 DGA sing 123 n n CEA HAF2 DGA sing 124 n n CFA CGA DGA sing 125 n n CFA HAN1 DGA sing 126 n n CFA HAN2 DGA sing 127 n n CGA CHA DGA sing 128 n n CGA HAS1 DGA sing 129 n n CGA HAS2 DGA sing 130 n n CHA CIA DGA sing 131 n n CHA HAV1 DGA sing 132 n n CHA HAV2 DGA sing 133 n n CIA HAG1 DGA sing 134 n n CIA HAG2 DGA sing 135 n n CIA HAG3 DGA sing 136 n n CB1 CB2 DGA sing 137 n n CB1 OB1 DGA doub 138 n n CB1 OG2 DGA sing 139 n n CB2 CB3 DGA sing 140 n n CB2 HB21 DGA sing 141 n n CB2 HB22 DGA sing 142 n n CB3 CB4 DGA sing 143 n n CB3 HB31 DGA sing 144 n n CB3 HB32 DGA sing 145 n n CB4 CB5 DGA sing 146 n n CB4 HB41 DGA sing 147 n n CB4 HB42 DGA sing 148 n n CB5 CB6 DGA sing 149 n n CB5 HB51 DGA sing 150 n n CB5 HB52 DGA sing 151 n n CB6 CB7 DGA sing 152 n n CB6 HB61 DGA sing 153 n n CB6 HB62 DGA sing 154 n n CB7 CB8 DGA sing 155 n n CB7 HB71 DGA sing 156 n n CB7 HB72 DGA sing 157 n n CB8 CB9 DGA sing 158 n n CB8 HB81 DGA sing 159 n n CB8 HB82 DGA sing 160 n n CB9 CAB DGA sing 161 n n CB9 HB91 DGA sing 162 n n CB9 HB92 DGA sing 163 n n CAB CBB DGA sing 164 n n CAB HBT1 DGA sing 165 n n CAB HBT2 DGA sing 166 n n CBB CCB DGA sing 167 n n CBB HBE1 DGA sing 168 n n CBB HBE2 DGA sing 169 n n CCB CDB DGA sing 170 n n CCB HBW1 DGA sing 171 n n CCB HBW2 DGA sing 172 n n CDB CEB DGA sing 173 n n CDB HBH1 DGA sing 174 n n CDB HBH2 DGA sing 175 n n CEB CFB DGA sing 176 n n CEB HBF1 DGA sing 177 n n CEB HBF2 DGA sing 178 n n CFB CGB DGA sing 179 n n CFB HBN1 DGA sing 180 n n CFB HBN2 DGA sing 181 n n CGB CHB DGA sing 182 n n CGB HBS1 DGA sing 183 n n CGB HBS2 DGA sing 184 n n CHB CIB DGA sing 185 n n CHB HBV1 DGA sing 186 n n CHB HBV2 DGA sing 187 n n CIB HBG1 DGA sing 188 n n CIB HBG2 DGA sing 189 n n CIB HBG3 DGA sing 190 n n OG1 CG1 DGA sing 191 n n CG1 CG2 DGA sing 192 n n CG1 HG11 DGA sing 193 n n CG1 HG12 DGA sing 194 n n CG2 OG2 DGA sing 195 n n CG2 CG3 DGA sing 196 n n CG2 HG2 DGA sing 197 n n CG3 OXT DGA sing 198 n n CG3 HG31 DGA sing 199 n n CG3 HG32 DGA sing 200 n n OXT HXT DGA sing 201 n n # _atom_sites.entry_id 8JF2 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 PGT A 1 601 601 PGT PGT . J 4 LMT A 1 602 5 LMT LMT . K 4 LMT A 1 603 17 LMT LMT . L 4 LMT A 1 604 18 LMT LMT . M 4 LMT A 1 605 19 LMT LMT . N 5 DGA B 1 501 603 DGA DGA . O 3 PGT B 1 502 502 PGT PGT . P 4 LMT B 1 503 2 LMT LMT . Q 4 LMT B 1 504 4 LMT LMT . R 4 LMT B 1 505 11 LMT LMT . S 4 LMT B 1 506 12 LMT LMT . T 4 LMT B 1 507 13 LMT LMT . U 4 LMT B 1 508 14 LMT LMT . V 4 LMT B 1 509 21 LMT LMT . W 4 LMT B 1 510 23 LMT LMT . X 3 PGT B 1 511 114 PGT PGT . Y 3 PGT C 1 501 502 PGT PGT . Z 5 DGA C 1 502 505 DGA DGA . AA 4 LMT C 1 503 9 LMT LMT . BA 4 LMT C 1 504 10 LMT LMT . CA 4 LMT C 1 505 16 LMT LMT . DA 4 LMT C 1 506 20 LMT LMT . EA 4 LMT C 1 507 22 LMT LMT . FA 4 LMT C 1 508 25 LMT LMT . GA 3 PGT C 1 509 115 PGT PGT . HA 3 PGT D 1 601 601 PGT PGT . IA 4 LMT D 1 602 1 LMT LMT . JA 4 LMT D 1 603 3 LMT LMT . KA 4 LMT D 1 604 6 LMT LMT . LA 4 LMT D 1 605 7 LMT LMT . MA 4 LMT D 1 606 8 LMT LMT . NA 4 LMT D 1 607 15 LMT LMT . OA 4 LMT D 1 608 24 LMT LMT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA1 DGA . . . N 5 145.308 153.419 131.647 1 104.59 ? CA1 DGA 501 B 1 HETATM 2 C CA2 DGA . . . N 5 146.226 154.58 131.422 1 104.59 ? CA2 DGA 501 B 1 HETATM 3 C CA3 DGA . . . N 5 146.172 155.094 129.991 1 104.59 ? CA3 DGA 501 B 1 HETATM 4 C CA4 DGA . . . N 5 147.37 155.948 129.619 1 104.59 ? CA4 DGA 501 B 1 HETATM 5 C CA5 DGA . . . N 5 147.823 156.886 130.721 1 104.59 ? CA5 DGA 501 B 1 HETATM 6 C CA6 DGA . . . N 5 149.049 157.705 130.356 1 104.59 ? CA6 DGA 501 B 1 HETATM 7 C CA7 DGA . . . N 5 149.981 157.971 131.525 1 104.59 ? CA7 DGA 501 B 1 HETATM 8 C CA8 DGA . . . N 5 151.229 158.752 131.152 1 104.59 ? CA8 DGA 501 B 1 HETATM 9 C CA9 DGA . . . N 5 150.95 160.016 130.36 1 104.59 ? CA9 DGA 501 B 1 HETATM 10 C CAA DGA . . . N 5 152.057 161.05 130.445 1 104.59 ? CAA DGA 501 B 1 HETATM 11 C CBA DGA . . . N 5 151.711 162.377 129.79 1 104.59 ? CBA DGA 501 B 1 HETATM 12 C CCA DGA . . . N 5 151.464 162.284 128.293 1 104.59 ? CCA DGA 501 B 1 HETATM 13 C CDA DGA . . . N 5 152.02 163.46 127.512 1 104.59 ? CDA DGA 501 B 1 HETATM 14 C CEA DGA . . . N 5 151.631 163.469 126.044 1 104.59 ? CEA DGA 501 B 1 HETATM 15 C CFA DGA . . . N 5 152.229 164.622 125.251 1 104.59 ? CFA DGA 501 B 1 HETATM 16 C CGA DGA . . . N 5 152.954 165.657 126.099 1 104.59 ? CGA DGA 501 B 1 HETATM 17 C CHA DGA . . . N 5 152.964 167.055 125.508 1 104.59 ? CHA DGA 501 B 1 HETATM 18 C CIA DGA . . . N 5 153.15 167.071 124.01 1 104.59 ? CIA DGA 501 B 1 HETATM 19 O OA1 DGA . . . N 5 144.534 152.991 130.835 1 104.59 ? OA1 DGA 501 B 1 HETATM 20 C CB1 DGA . . . N 5 143.505 149.915 134.704 1 104.59 ? CB1 DGA 501 B 1 HETATM 21 C CB2 DGA . . . N 5 142.04 149.676 134.52 1 104.59 ? CB2 DGA 501 B 1 HETATM 22 C CB3 DGA . . . N 5 141.733 148.519 133.583 1 104.59 ? CB3 DGA 501 B 1 HETATM 23 C CB4 DGA . . . N 5 140.282 148.493 133.139 1 104.59 ? CB4 DGA 501 B 1 HETATM 24 C CB5 DGA . . . N 5 139.859 149.714 132.338 1 104.59 ? CB5 DGA 501 B 1 HETATM 25 C CB6 DGA . . . N 5 140.623 149.9 131.04 1 104.59 ? CB6 DGA 501 B 1 HETATM 26 C CB7 DGA . . . N 5 139.807 150.54 129.93 1 104.59 ? CB7 DGA 501 B 1 HETATM 27 C CB8 DGA . . . N 5 138.638 149.69 129.459 1 104.59 ? CB8 DGA 501 B 1 HETATM 28 C CB9 DGA . . . N 5 137.924 150.245 128.237 1 104.59 ? CB9 DGA 501 B 1 HETATM 29 C CAB DGA . . . N 5 138.095 149.401 126.986 1 104.59 ? CAB DGA 501 B 1 HETATM 30 C CBB DGA . . . N 5 138.191 150.21 125.701 1 104.59 ? CBB DGA 501 B 1 HETATM 31 C CCB DGA . . . N 5 136.891 150.291 124.92 1 104.59 ? CCB DGA 501 B 1 HETATM 32 C CDB DGA . . . N 5 136.273 148.939 124.615 1 104.59 ? CDB DGA 501 B 1 HETATM 33 C CEB DGA . . . N 5 137.161 148.026 123.787 1 104.59 ? CEB DGA 501 B 1 HETATM 34 C CFB DGA . . . N 5 136.951 146.544 124.066 1 104.59 ? CFB DGA 501 B 1 HETATM 35 C CGB DGA . . . N 5 136.98 146.182 125.544 1 104.59 ? CGB DGA 501 B 1 HETATM 36 C CHB DGA . . . N 5 136.94 144.691 125.826 1 104.59 ? CHB DGA 501 B 1 HETATM 37 C CIB DGA . . . N 5 135.85 143.974 125.067 1 104.59 ? CIB DGA 501 B 1 HETATM 38 O OB1 DGA . . . N 5 144.377 149.225 134.254 1 104.59 ? OB1 DGA 501 B 1 HETATM 39 O OG1 DGA . . . N 5 145.449 152.916 132.872 1 104.59 ? OG1 DGA 501 B 1 HETATM 40 C CG1 DGA . . . N 5 144.366 152.107 133.376 1 104.59 ? CG1 DGA 501 B 1 HETATM 41 C CG2 DGA . . . N 5 144.444 152.129 134.877 1 104.59 ? CG2 DGA 501 B 1 HETATM 42 O OG2 DGA . . . N 5 143.724 150.997 135.463 1 104.59 ? OG2 DGA 501 B 1 HETATM 43 C CG3 DGA . . . N 5 145.859 152.018 135.373 1 104.59 ? CG3 DGA 501 B 1 HETATM 44 O OXT DGA . . . N 5 146.672 153.059 134.852 1 104.59 ? OXT DGA 501 B 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 44 #