data_8JF2
#
_model_server_result.job_id            pqWzKHry-oIFCP5TA2juDA 
_model_server_result.datetime_utc      '2025-03-06 03:39:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jf2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":502}' 
#
_entry.id    8JF2 
#
_exptl.entry_id    8JF2 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              625.018 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIACYL GLYCEROL' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8JF2 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JF2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 N N N 
? 5 Z N N 
#
_chem_comp.formula           'C39 H76 O5' 
_chem_comp.formula_weight    625.018 
_chem_comp.id                DGA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIACYL GLYCEROL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CA1 CA2 DGA sing 83 n n 
CA1 OA1 DGA doub 84 n n 
CA1 OG1 DGA sing 85 n n 
CA2 CA3 DGA sing 86 n n 
CA2 HA21 DGA sing 87 n n 
CA2 HA22 DGA sing 88 n n 
CA3 CA4 DGA sing 89 n n 
CA3 HA31 DGA sing 90 n n 
CA3 HA32 DGA sing 91 n n 
CA4 CA5 DGA sing 92 n n 
CA4 HA41 DGA sing 93 n n 
CA4 HA42 DGA sing 94 n n 
CA5 CA6 DGA sing 95 n n 
CA5 HA51 DGA sing 96 n n 
CA5 HA52 DGA sing 97 n n 
CA6 CA7 DGA sing 98 n n 
CA6 HA61 DGA sing 99 n n 
CA6 HA62 DGA sing 100 n n 
CA7 CA8 DGA sing 101 n n 
CA7 HA71 DGA sing 102 n n 
CA7 HA72 DGA sing 103 n n 
CA8 CA9 DGA sing 104 n n 
CA8 HA81 DGA sing 105 n n 
CA8 HA82 DGA sing 106 n n 
CA9 CAA DGA sing 107 n n 
CA9 HA91 DGA sing 108 n n 
CA9 HA92 DGA sing 109 n n 
CAA CBA DGA sing 110 n n 
CAA HAT1 DGA sing 111 n n 
CAA HAT2 DGA sing 112 n n 
CBA CCA DGA sing 113 n n 
CBA HAE1 DGA sing 114 n n 
CBA HAE2 DGA sing 115 n n 
CCA CDA DGA sing 116 n n 
CCA HAW1 DGA sing 117 n n 
CCA HAW2 DGA sing 118 n n 
CDA CEA DGA sing 119 n n 
CDA HAH1 DGA sing 120 n n 
CDA HAH2 DGA sing 121 n n 
CEA CFA DGA sing 122 n n 
CEA HAF1 DGA sing 123 n n 
CEA HAF2 DGA sing 124 n n 
CFA CGA DGA sing 125 n n 
CFA HAN1 DGA sing 126 n n 
CFA HAN2 DGA sing 127 n n 
CGA CHA DGA sing 128 n n 
CGA HAS1 DGA sing 129 n n 
CGA HAS2 DGA sing 130 n n 
CHA CIA DGA sing 131 n n 
CHA HAV1 DGA sing 132 n n 
CHA HAV2 DGA sing 133 n n 
CIA HAG1 DGA sing 134 n n 
CIA HAG2 DGA sing 135 n n 
CIA HAG3 DGA sing 136 n n 
CB1 CB2 DGA sing 137 n n 
CB1 OB1 DGA doub 138 n n 
CB1 OG2 DGA sing 139 n n 
CB2 CB3 DGA sing 140 n n 
CB2 HB21 DGA sing 141 n n 
CB2 HB22 DGA sing 142 n n 
CB3 CB4 DGA sing 143 n n 
CB3 HB31 DGA sing 144 n n 
CB3 HB32 DGA sing 145 n n 
CB4 CB5 DGA sing 146 n n 
CB4 HB41 DGA sing 147 n n 
CB4 HB42 DGA sing 148 n n 
CB5 CB6 DGA sing 149 n n 
CB5 HB51 DGA sing 150 n n 
CB5 HB52 DGA sing 151 n n 
CB6 CB7 DGA sing 152 n n 
CB6 HB61 DGA sing 153 n n 
CB6 HB62 DGA sing 154 n n 
CB7 CB8 DGA sing 155 n n 
CB7 HB71 DGA sing 156 n n 
CB7 HB72 DGA sing 157 n n 
CB8 CB9 DGA sing 158 n n 
CB8 HB81 DGA sing 159 n n 
CB8 HB82 DGA sing 160 n n 
CB9 CAB DGA sing 161 n n 
CB9 HB91 DGA sing 162 n n 
CB9 HB92 DGA sing 163 n n 
CAB CBB DGA sing 164 n n 
CAB HBT1 DGA sing 165 n n 
CAB HBT2 DGA sing 166 n n 
CBB CCB DGA sing 167 n n 
CBB HBE1 DGA sing 168 n n 
CBB HBE2 DGA sing 169 n n 
CCB CDB DGA sing 170 n n 
CCB HBW1 DGA sing 171 n n 
CCB HBW2 DGA sing 172 n n 
CDB CEB DGA sing 173 n n 
CDB HBH1 DGA sing 174 n n 
CDB HBH2 DGA sing 175 n n 
CEB CFB DGA sing 176 n n 
CEB HBF1 DGA sing 177 n n 
CEB HBF2 DGA sing 178 n n 
CFB CGB DGA sing 179 n n 
CFB HBN1 DGA sing 180 n n 
CFB HBN2 DGA sing 181 n n 
CGB CHB DGA sing 182 n n 
CGB HBS1 DGA sing 183 n n 
CGB HBS2 DGA sing 184 n n 
CHB CIB DGA sing 185 n n 
CHB HBV1 DGA sing 186 n n 
CHB HBV2 DGA sing 187 n n 
CIB HBG1 DGA sing 188 n n 
CIB HBG2 DGA sing 189 n n 
CIB HBG3 DGA sing 190 n n 
OG1 CG1 DGA sing 191 n n 
CG1 CG2 DGA sing 192 n n 
CG1 HG11 DGA sing 193 n n 
CG1 HG12 DGA sing 194 n n 
CG2 OG2 DGA sing 195 n n 
CG2 CG3 DGA sing 196 n n 
CG2 HG2 DGA sing 197 n n 
CG3 OXT DGA sing 198 n n 
CG3 HG31 DGA sing 199 n n 
CG3 HG32 DGA sing 200 n n 
OXT HXT DGA sing 201 n n 
#
_atom_sites.entry_id                     8JF2 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 PGT A 1 601 601 PGT PGT . 
J 4 LMT A 1 602 5 LMT LMT . 
K 4 LMT A 1 603 17 LMT LMT . 
L 4 LMT A 1 604 18 LMT LMT . 
M 4 LMT A 1 605 19 LMT LMT . 
N 5 DGA B 1 501 603 DGA DGA . 
O 3 PGT B 1 502 502 PGT PGT . 
P 4 LMT B 1 503 2 LMT LMT . 
Q 4 LMT B 1 504 4 LMT LMT . 
R 4 LMT B 1 505 11 LMT LMT . 
S 4 LMT B 1 506 12 LMT LMT . 
T 4 LMT B 1 507 13 LMT LMT . 
U 4 LMT B 1 508 14 LMT LMT . 
V 4 LMT B 1 509 21 LMT LMT . 
W 4 LMT B 1 510 23 LMT LMT . 
X 3 PGT B 1 511 114 PGT PGT . 
Y 3 PGT C 1 501 502 PGT PGT . 
Z 5 DGA C 1 502 505 DGA DGA . 
AA 4 LMT C 1 503 9 LMT LMT . 
BA 4 LMT C 1 504 10 LMT LMT . 
CA 4 LMT C 1 505 16 LMT LMT . 
DA 4 LMT C 1 506 20 LMT LMT . 
EA 4 LMT C 1 507 22 LMT LMT . 
FA 4 LMT C 1 508 25 LMT LMT . 
GA 3 PGT C 1 509 115 PGT PGT . 
HA 3 PGT D 1 601 601 PGT PGT . 
IA 4 LMT D 1 602 1 LMT LMT . 
JA 4 LMT D 1 603 3 LMT LMT . 
KA 4 LMT D 1 604 6 LMT LMT . 
LA 4 LMT D 1 605 7 LMT LMT . 
MA 4 LMT D 1 606 8 LMT LMT . 
NA 4 LMT D 1 607 15 LMT LMT . 
OA 4 LMT D 1 608 24 LMT LMT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CA1 DGA . . . Z 5 124.432 117.057 133.75 1 113.41 ? CA1 DGA 502 C 1 
HETATM 2 C CA2 DGA . . . Z 5 125.162 115.913 133.119 1 113.41 ? CA2 DGA 502 C 1 
HETATM 3 C CA3 DGA . . . Z 5 125.324 116.067 131.614 1 113.41 ? CA3 DGA 502 C 1 
HETATM 4 C CA4 DGA . . . Z 5 125.683 114.758 130.933 1 113.41 ? CA4 DGA 502 C 1 
HETATM 5 C CA5 DGA . . . Z 5 125.412 114.744 129.442 1 113.41 ? CA5 DGA 502 C 1 
HETATM 6 C CA6 DGA . . . Z 5 126.085 115.877 128.69 1 113.41 ? CA6 DGA 502 C 1 
HETATM 7 C CA7 DGA . . . Z 5 127.599 115.876 128.802 1 113.41 ? CA7 DGA 502 C 1 
HETATM 8 C CA8 DGA . . . Z 5 128.273 116.908 127.919 1 113.41 ? CA8 DGA 502 C 1 
HETATM 9 C CA9 DGA . . . Z 5 128.033 116.692 126.436 1 113.41 ? CA9 DGA 502 C 1 
HETATM 10 C CAA DGA . . . Z 5 128.651 115.414 125.897 1 113.41 ? CAA DGA 502 C 1 
HETATM 11 C CBA DGA . . . Z 5 128.526 115.264 124.393 1 113.41 ? CBA DGA 502 C 1 
HETATM 12 C CCA DGA . . . Z 5 128.649 116.576 123.64 1 113.41 ? CCA DGA 502 C 1 
HETATM 13 C CDA DGA . . . Z 5 128.743 116.41 122.135 1 113.41 ? CDA DGA 502 C 1 
HETATM 14 C CEA DGA . . . Z 5 128.577 117.706 121.36 1 113.41 ? CEA DGA 502 C 1 
HETATM 15 C CFA DGA . . . Z 5 129.569 118.79 121.744 1 113.41 ? CFA DGA 502 C 1 
HETATM 16 C CGA DGA . . . Z 5 130.773 118.879 120.822 1 113.41 ? CGA DGA 502 C 1 
HETATM 17 C CHA DGA . . . Z 5 131.885 117.899 121.147 1 113.41 ? CHA DGA 502 C 1 
HETATM 18 C CIA DGA . . . Z 5 132.332 117.962 122.588 1 113.41 ? CIA DGA 502 C 1 
HETATM 19 O OA1 DGA . . . Z 5 124.905 118.142 133.95 1 113.41 ? OA1 DGA 502 C 1 
HETATM 20 C CB1 DGA . . . Z 5 120.471 113.121 133.542 1 113.41 ? CB1 DGA 502 C 1 
HETATM 21 C CB2 DGA . . . Z 5 120.786 112.876 132.094 1 113.41 ? CB2 DGA 502 C 1 
HETATM 22 C CB3 DGA . . . Z 5 119.723 112.061 131.369 1 113.41 ? CB3 DGA 502 C 1 
HETATM 23 C CB4 DGA . . . Z 5 119.625 110.63 131.868 1 113.41 ? CB4 DGA 502 C 1 
HETATM 24 C CB5 DGA . . . Z 5 118.577 109.799 131.152 1 113.41 ? CB5 DGA 502 C 1 
HETATM 25 C CB6 DGA . . . Z 5 118.613 109.941 129.643 1 113.41 ? CB6 DGA 502 C 1 
HETATM 26 C CB7 DGA . . . Z 5 118.269 108.664 128.897 1 113.41 ? CB7 DGA 502 C 1 
HETATM 27 C CB8 DGA . . . Z 5 116.835 108.202 129.086 1 113.41 ? CB8 DGA 502 C 1 
HETATM 28 C CB9 DGA . . . Z 5 116.424 107.076 128.151 1 113.41 ? CB9 DGA 502 C 1 
HETATM 29 C CAB DGA . . . Z 5 116.858 107.28 126.708 1 113.41 ? CAB DGA 502 C 1 
HETATM 30 C CBB DGA . . . Z 5 115.723 107.188 125.7 1 113.41 ? CBB DGA 502 C 1 
HETATM 31 C CCB DGA . . . Z 5 114.663 108.269 125.862 1 113.41 ? CCB DGA 502 C 1 
HETATM 32 C CDB DGA . . . Z 5 113.722 108.399 124.673 1 113.41 ? CDB DGA 502 C 1 
HETATM 33 C CEB DGA . . . Z 5 112.85 107.177 124.437 1 113.41 ? CEB DGA 502 C 1 
HETATM 34 C CFB DGA . . . Z 5 112.364 107.034 123.005 1 113.41 ? CFB DGA 502 C 1 
HETATM 35 C CGB DGA . . . Z 5 113.479 107.07 121.973 1 113.41 ? CGB DGA 502 C 1 
HETATM 36 C CHB DGA . . . Z 5 113.065 106.608 120.589 1 113.41 ? CHB DGA 502 C 1 
HETATM 37 C CIB DGA . . . Z 5 112.659 105.155 120.549 1 113.41 ? CIB DGA 502 C 1 
HETATM 38 O OB1 DGA . . . Z 5 119.415 112.895 134.066 1 113.41 ? OB1 DGA 502 C 1 
HETATM 39 O OG1 DGA . . . Z 5 123.173 116.729 134.05 1 113.41 ? OG1 DGA 502 C 1 
HETATM 40 C CG1 DGA . . . Z 5 122.963 115.46 134.704 1 113.41 ? CG1 DGA 502 C 1 
HETATM 41 C CG2 DGA . . . Z 5 121.53 115.041 134.52 1 113.41 ? CG2 DGA 502 C 1 
HETATM 42 O OG2 DGA . . . Z 5 121.535 113.618 134.189 1 113.41 ? OG2 DGA 502 C 1 
HETATM 43 C CG3 DGA . . . Z 5 120.737 115.159 135.793 1 113.41 ? CG3 DGA 502 C 1 
HETATM 44 O OXT DGA . . . Z 5 121.486 115.81 136.81 1 113.41 ? OXT DGA 502 C 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           247 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           44 
#