data_8JF3 # _model_server_result.job_id VXZY_ZLmVWzDzn9uSlT1Sw _model_server_result.datetime_utc '2025-08-03 21:38:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jf3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8JF3 # _exptl.entry_id 8JF3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 549.582 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[4-[4-[bis(oxidanylidene)-$l^5-sulfanyl]oxyphenyl]carbonylpiperazin-1-yl]-6-[(5-cyclopropyl-1H-pyrazol-3-yl)amino]-N-prop-2-ynyl-pyrimidine-4-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 101.214 _cell.angle_beta 91.048 _cell.angle_gamma 90.161 _cell.entry_id 8JF3 _cell.length_a 41.716 _cell.length_b 63.427 _cell.length_c 73.649 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JF3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C25 H25 N8 O5 S 1' _chem_comp.formula_weight 549.582 _chem_comp.id C0N _chem_comp.mon_nstd_flag . _chem_comp.name 2-[4-[4-[bis(oxidanylidene)-$l^5-sulfanyl]oxyphenyl]carbonylpiperazin-1-yl]-6-[(5-cyclopropyl-1H-pyrazol-3-yl)amino]-N-prop-2-ynyl-pyrimidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C19 C0N doub 70 n n C8 C7 C0N trip 71 n n C16 C15 C0N sing 72 n n C16 N8 C0N sing 73 n n C19 C20 C0N sing 74 n n C19 N8 C0N sing 75 n n C21 C20 C0N doub 76 n y C21 C22 C0N sing 77 n y C15 N7 C0N sing 78 n n C20 C25 C0N sing 79 n y O1 C5 C0N doub 80 n n N8 C17 C0N sing 81 n n C7 C6 C0N sing 82 n n C22 C23 C0N doub 83 n y C25 C24 C0N doub 84 n y C5 N3 C0N sing 85 n n C5 C2 C0N sing 86 n n C6 N3 C0N sing 87 n n O4 S1 C0N doub 88 n n C23 C24 C0N sing 89 n y C23 O2 C0N sing 90 n n N1 C2 C0N doub 91 n y N1 C3 C0N sing 92 n y N7 C3 C0N sing 93 n n N7 C18 C0N sing 94 n n C17 C18 C0N sing 95 n n C2 C1 C0N sing 96 n y O2 S1 C0N sing 97 n n C3 N2 C0N doub 98 n y S1 O5 C0N doub 99 n n N2 C4 C0N sing 100 n y C1 C4 C0N doub 101 n y C4 N4 C0N sing 102 n n N4 C9 C0N sing 103 n n C14 C12 C0N sing 104 n n C10 C9 C0N sing 105 n y C10 C11 C0N doub 106 n y C9 N6 C0N doub 107 n y C11 C12 C0N sing 108 n n C11 N5 C0N sing 109 n y C12 C13 C0N sing 110 n n N6 N5 C0N sing 111 n y N3 H2 C0N sing 112 n n C6 H4 C0N sing 113 n n C6 H3 C0N sing 114 n n C8 H5 C0N sing 115 n n C10 H7 C0N sing 116 n n C13 H11 C0N sing 117 n n C13 H26 C0N sing 118 n n C15 H14 C0N sing 119 n n C15 H15 C0N sing 120 n n C17 H18 C0N sing 121 n n C17 H19 C0N sing 122 n n C21 H22 C0N sing 123 n n C22 H23 C0N sing 124 n n C24 H24 C0N sing 125 n n C1 H1 C0N sing 126 n n N4 H6 C0N sing 127 n n N5 H8 C0N sing 128 n n C12 H9 C0N sing 129 n n C14 H27 C0N sing 130 n n C14 H12 C0N sing 131 n n C16 H16 C0N sing 132 n n C16 H17 C0N sing 133 n n C18 H20 C0N sing 134 n n C18 H21 C0N sing 135 n n C25 H25 C0N sing 136 n n C13 C14 C0N sing 137 n n # _atom_sites.entry_id 8JF3 _atom_sites.fract_transf_matrix[1][1] 0.023972 _atom_sites.fract_transf_matrix[1][2] 0.000067 _atom_sites.fract_transf_matrix[1][3] 0.00046 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015766 _atom_sites.fract_transf_matrix[2][3] 0.003127 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013845 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 C0N A 1 601 1 C0N LIG . D 2 C0N B 1 601 2 C0N LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 C0N . . . C 2 -4.807 35.143 13.951 1 37.35 ? N1 C0N 601 A 1 HETATM 2 N N3 C0N . . . C 2 -8.588 34.84 14.4 1 31.84 ? N3 C0N 601 A 1 HETATM 3 C C4 C0N . . . C 2 -5.16 32.762 12.288 1 43.65 ? C4 C0N 601 A 1 HETATM 4 C C5 C0N . . . C 2 -7.317 35.482 14.25 1 35.57 ? C5 C0N 601 A 1 HETATM 5 C C6 C0N . . . C 2 -9.732 35.512 14.94 1 34.94 ? C6 C0N 601 A 1 HETATM 6 C C7 C0N . . . C 2 -10.017 34.987 16.343 1 31.36 ? C7 C0N 601 A 1 HETATM 7 C C8 C0N . . . C 2 -10.23 34.543 17.441 1 26.58 ? C8 C0N 601 A 1 HETATM 8 C C10 C0N . . . C 2 -3.201 31.49 10.192 1 39.52 ? C10 C0N 601 A 1 HETATM 9 C C13 C0N . . . C 2 0.065 30.027 9.486 1 29.49 ? C13 C0N 601 A 1 HETATM 10 C C15 C0N . . . C 2 -2.144 36.232 14.27 1 58.88 ? C15 C0N 601 A 1 HETATM 11 C C17 C0N . . . C 2 0.198 34.653 13.769 1 61.27 ? C17 C0N 601 A 1 HETATM 12 C C20 C0N . . . C 2 2.796 36.15 13.27 1 79.31 ? C20 C0N 601 A 1 HETATM 13 C C21 C0N . . . C 2 3.653 35.037 13.87 1 76.66 ? C21 C0N 601 A 1 HETATM 14 C C22 C0N . . . C 2 4.857 34.475 13.108 1 79.59 ? C22 C0N 601 A 1 HETATM 15 C C24 C0N . . . C 2 4.383 36.137 11.127 1 82.94 ? C24 C0N 601 A 1 HETATM 16 C C1 C0N . . . C 2 -6.331 33.5 12.83 1 43.78 ? C1 C0N 601 A 1 HETATM 17 C C2 C0N . . . C 2 -6.129 34.706 13.666 1 38.51 ? C2 C0N 601 A 1 HETATM 18 C C3 C0N . . . C 2 -3.642 34.42 13.424 1 48.73 ? C3 C0N 601 A 1 HETATM 19 N N2 C0N . . . C 2 -3.839 33.229 12.585 1 44.93 ? N2 C0N 601 A 1 HETATM 20 O O1 C0N . . . C 2 -7.174 36.636 14.612 1 36.65 ? O1 C0N 601 A 1 HETATM 21 N N4 C0N . . . C 2 -5.379 31.589 11.462 1 37.2 ? N4 C0N 601 A 1 HETATM 22 C C9 C0N . . . C 2 -4.325 30.908 10.734 1 34.88 ? C9 C0N 601 A 1 HETATM 23 C C11 C0N . . . C 2 -2.455 30.513 9.598 1 44.04 ? C11 C0N 601 A 1 HETATM 24 N N5 C0N . . . C 2 -3.104 29.334 9.758 1 37.65 ? N5 C0N 601 A 1 HETATM 25 N N6 C0N . . . C 2 -4.262 29.579 10.457 1 35.65 ? N6 C0N 601 A 1 HETATM 26 C C12 C0N . . . C 2 -1.126 30.74 8.869 1 42.73 ? C12 C0N 601 A 1 HETATM 27 C C14 C0N . . . C 2 -0.085 31.529 9.645 1 32.93 ? C14 C0N 601 A 1 HETATM 28 N N7 C0N . . . C 2 -2.312 34.903 13.723 1 53.04 ? N7 C0N 601 A 1 HETATM 29 C C16 C0N . . . C 2 -0.792 36.53 14.89 1 59.57 ? C16 C0N 601 A 1 HETATM 30 N N8 C0N . . . C 2 0.332 35.989 14.217 1 58.91 ? N8 C0N 601 A 1 HETATM 31 C C18 C0N . . . C 2 -1.138 34.286 13.131 1 50.69 ? C18 C0N 601 A 1 HETATM 32 C C19 C0N . . . C 2 1.566 36.753 14.015 1 72.65 ? C19 C0N 601 A 1 HETATM 33 C C23 C0N . . . C 2 5.22 35.018 11.73 1 88.52 ? C23 C0N 601 A 1 HETATM 34 C C25 C0N . . . C 2 3.184 36.688 11.897 1 80.14 ? C25 C0N 601 A 1 HETATM 35 O O2 C0N . . . C 2 6.347 34.492 11.045 1 97.17 ? O2 C0N 601 A 1 HETATM 36 O O3 C0N . . . C 2 1.622 37.9 14.427 1 71.75 ? O3 C0N 601 A 1 HETATM 37 S S1 C0N . . . C 2 6.357 34.353 9.531 1 126.58 ? S1 C0N 601 A 1 HETATM 38 O O4 C0N . . . C 2 6.353 35.691 8.813 1 93.98 ? O4 C0N 601 A 1 HETATM 39 O O5 C0N . . . C 2 7.686 33.794 9.096 1 98.49 ? O5 C0N 601 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 39 #