data_8JF3
#
_model_server_result.job_id            FevBLgrvQLPnfKXSUQ-OnA 
_model_server_result.datetime_utc      '2025-07-31 06:40:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jf3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    8JF3 
#
_exptl.entry_id    8JF3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              549.582 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[4-[4-[bis(oxidanylidene)-$l^5-sulfanyl]oxyphenyl]carbonylpiperazin-1-yl]-6-[(5-cyclopropyl-1H-pyrazol-3-yl)amino]-N-prop-2-ynyl-pyrimidine-4-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         101.214 
_cell.angle_beta          91.048 
_cell.angle_gamma         90.161 
_cell.entry_id            8JF3 
_cell.length_a            41.716 
_cell.length_b            63.427 
_cell.length_c            73.649 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JF3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C25 H25 N8 O5 S 1' 
_chem_comp.formula_weight    549.582 
_chem_comp.id                C0N 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[4-[4-[bis(oxidanylidene)-$l^5-sulfanyl]oxyphenyl]carbonylpiperazin-1-yl]-6-[(5-cyclopropyl-1H-pyrazol-3-yl)amino]-N-prop-2-ynyl-pyrimidine-4-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3 C19 C0N doub 70 n n 
C8 C7 C0N trip 71 n n 
C16 C15 C0N sing 72 n n 
C16 N8 C0N sing 73 n n 
C19 C20 C0N sing 74 n n 
C19 N8 C0N sing 75 n n 
C21 C20 C0N doub 76 n y 
C21 C22 C0N sing 77 n y 
C15 N7 C0N sing 78 n n 
C20 C25 C0N sing 79 n y 
O1 C5 C0N doub 80 n n 
N8 C17 C0N sing 81 n n 
C7 C6 C0N sing 82 n n 
C22 C23 C0N doub 83 n y 
C25 C24 C0N doub 84 n y 
C5 N3 C0N sing 85 n n 
C5 C2 C0N sing 86 n n 
C6 N3 C0N sing 87 n n 
O4 S1 C0N doub 88 n n 
C23 C24 C0N sing 89 n y 
C23 O2 C0N sing 90 n n 
N1 C2 C0N doub 91 n y 
N1 C3 C0N sing 92 n y 
N7 C3 C0N sing 93 n n 
N7 C18 C0N sing 94 n n 
C17 C18 C0N sing 95 n n 
C2 C1 C0N sing 96 n y 
O2 S1 C0N sing 97 n n 
C3 N2 C0N doub 98 n y 
S1 O5 C0N doub 99 n n 
N2 C4 C0N sing 100 n y 
C1 C4 C0N doub 101 n y 
C4 N4 C0N sing 102 n n 
N4 C9 C0N sing 103 n n 
C14 C12 C0N sing 104 n n 
C10 C9 C0N sing 105 n y 
C10 C11 C0N doub 106 n y 
C9 N6 C0N doub 107 n y 
C11 C12 C0N sing 108 n n 
C11 N5 C0N sing 109 n y 
C12 C13 C0N sing 110 n n 
N6 N5 C0N sing 111 n y 
N3 H2 C0N sing 112 n n 
C6 H4 C0N sing 113 n n 
C6 H3 C0N sing 114 n n 
C8 H5 C0N sing 115 n n 
C10 H7 C0N sing 116 n n 
C13 H11 C0N sing 117 n n 
C13 H26 C0N sing 118 n n 
C15 H14 C0N sing 119 n n 
C15 H15 C0N sing 120 n n 
C17 H18 C0N sing 121 n n 
C17 H19 C0N sing 122 n n 
C21 H22 C0N sing 123 n n 
C22 H23 C0N sing 124 n n 
C24 H24 C0N sing 125 n n 
C1 H1 C0N sing 126 n n 
N4 H6 C0N sing 127 n n 
N5 H8 C0N sing 128 n n 
C12 H9 C0N sing 129 n n 
C14 H27 C0N sing 130 n n 
C14 H12 C0N sing 131 n n 
C16 H16 C0N sing 132 n n 
C16 H17 C0N sing 133 n n 
C18 H20 C0N sing 134 n n 
C18 H21 C0N sing 135 n n 
C25 H25 C0N sing 136 n n 
C13 C14 C0N sing 137 n n 
#
_atom_sites.entry_id                     8JF3 
_atom_sites.fract_transf_matrix[1][1]    0.023972 
_atom_sites.fract_transf_matrix[1][2]    0.000067 
_atom_sites.fract_transf_matrix[1][3]    0.00046 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015766 
_atom_sites.fract_transf_matrix[2][3]    0.003127 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013845 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 C0N A 1 601 1 C0N LIG . 
D 2 C0N B 1 601 2 C0N LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 C0N . . . D 2 4.035 66.892 45.616 1 44.41 ? N1 C0N 601 B 1 
HETATM 2 N N3 C0N . . . D 2 7.763 66.501 44.858 1 34.73 ? N3 C0N 601 B 1 
HETATM 3 C C4 C0N . . . D 2 4.445 64.398 47.105 1 41.29 ? C4 C0N 601 B 1 
HETATM 4 C C5 C0N . . . D 2 6.53 67.165 45.151 1 42.23 ? C5 C0N 601 B 1 
HETATM 5 C C6 C0N . . . D 2 8.843 67.243 44.275 1 41.89 ? C6 C0N 601 B 1 
HETATM 6 C C7 C0N . . . D 2 9.102 66.714 42.871 1 38.28 ? C7 C0N 601 B 1 
HETATM 7 C C8 C0N . . . D 2 9.301 66.296 41.768 1 33.97 ? C8 C0N 601 B 1 
HETATM 8 C C10 C0N . . . D 2 2.53 63.053 49.137 1 41.05 ? C10 C0N 601 B 1 
HETATM 9 C C13 C0N . . . D 2 -0.709 61.95 49.731 1 40.98 ? C13 C0N 601 B 1 
HETATM 10 C C15 C0N . . . D 2 1.377 68.04 45.584 1 65.88 ? C15 C0N 601 B 1 
HETATM 11 C C17 C0N . . . D 2 -0.827 66.296 46.048 1 67.25 ? C17 C0N 601 B 1 
HETATM 12 C C20 C0N . . . D 2 -3.399 67.488 47.597 1 88.1 ? C20 C0N 601 B 1 
HETATM 13 C C21 C0N . . . D 2 -4.48 68.341 48.247 1 89.49 ? C21 C0N 601 B 1 
HETATM 14 C C22 C0N . . . D 2 -5.727 67.696 48.834 1 90.81 ? C22 C0N 601 B 1 
HETATM 15 C C24 C0N . . . D 2 -4.839 65.329 48.125 1 93.93 ? C24 C0N 601 B 1 
HETATM 16 C C1 C0N . . . D 2 5.591 65.135 46.517 1 41.75 ? C1 C0N 601 B 1 
HETATM 17 C C2 C0N . . . D 2 5.36 66.394 45.768 1 43.24 ? C2 C0N 601 B 1 
HETATM 18 C C3 C0N . . . D 2 2.898 66.167 46.195 1 52.09 ? C3 C0N 601 B 1 
HETATM 19 N N2 C0N . . . D 2 3.122 64.919 46.939 1 46.85 ? N2 C0N 601 B 1 
HETATM 20 O O1 C0N . . . D 2 6.406 68.35 44.901 1 44.51 ? O1 C0N 601 B 1 
HETATM 21 N N4 C0N . . . D 2 4.691 63.177 47.831 1 31.23 ? N4 C0N 601 B 1 
HETATM 22 C C9 C0N . . . D 2 3.69 62.513 48.624 1 36.13 ? C9 C0N 601 B 1 
HETATM 23 C C11 C0N . . . D 2 1.87 62.069 49.833 1 41.03 ? C11 C0N 601 B 1 
HETATM 24 N N5 C0N . . . D 2 2.612 60.934 49.76 1 38.86 ? N5 C0N 601 B 1 
HETATM 25 N N6 C0N . . . D 2 3.74 61.212 49.011 1 35.14 ? N6 C0N 601 B 1 
HETATM 26 C C12 C0N . . . D 2 0.53 62.221 50.569 1 42.37 ? C12 C0N 601 B 1 
HETATM 27 C C14 C0N . . . D 2 -0.35 63.376 50.118 1 43.31 ? C14 C0N 601 B 1 
HETATM 28 N N7 C0N . . . D 2 1.569 66.689 46.033 1 59.86 ? N7 C0N 601 B 1 
HETATM 29 C C16 C0N . . . D 2 -0.005 68.587 45.918 1 68.56 ? C16 C0N 601 B 1 
HETATM 30 N N8 C0N . . . D 2 -1.01 67.674 46.332 1 74.48 ? N8 C0N 601 B 1 
HETATM 31 C C18 C0N . . . D 2 0.522 65.871 45.488 1 55.77 ? C18 C0N 601 B 1 
HETATM 32 C C19 C0N . . . D 2 -2.161 68.241 47.032 1 81.25 ? C19 C0N 601 B 1 
HETATM 33 C C23 C0N . . . D 2 -5.912 66.188 48.773 1 99 ? C23 C0N 601 B 1 
HETATM 34 C C25 C0N . . . D 2 -3.595 65.977 47.54 1 87.58 ? C25 C0N 601 B 1 
HETATM 35 O O2 C0N . . . D 2 -7.074 65.581 49.309 1 105.92 ? O2 C0N 601 B 1 
HETATM 36 O O3 C0N . . . D 2 -2.153 69.444 47.196 1 79.13 ? O3 C0N 601 B 1 
HETATM 37 S S1 C0N . . . D 2 -7.113 65.474 50.818 1 141.07 ? S1 C0N 601 B 1 
HETATM 38 O O4 C0N . . . D 2 -7.252 66.854 51.42 1 110.38 ? O4 C0N 601 B 1 
HETATM 39 O O5 C0N . . . D 2 -8.419 64.846 51.272 1 121.37 ? O5 C0N 601 B 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           103 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           39 
#