data_8JF5 # _model_server_result.job_id G2zAC8VSXcf-kE3ZMkn35A _model_server_result.datetime_utc '2024-11-14 18:49:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jf5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":904}' # _entry.id 8JF5 # _exptl.entry_id 8JF5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 475.53 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[5-[(3~{R})-3-azanylpyrrolidin-1-yl]carbonyl-2-[2-fluoranyl-4-(2-methyl-2-oxidanyl-propyl)phenyl]phenyl]-2-fluoranyl-benzenecarbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JF5 _cell.length_a 121.772 _cell.length_b 179.115 _cell.length_c 235.029 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JF5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H27 F2 N3 O2' _chem_comp.formula_weight 475.53 _chem_comp.id UEU _chem_comp.mon_nstd_flag . _chem_comp.name 4-[5-[(3~{R})-3-azanylpyrrolidin-1-yl]carbonyl-2-[2-fluoranyl-4-(2-methyl-2-oxidanyl-propyl)phenyl]phenyl]-2-fluoranyl-benzenecarbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C33 C34 UEU sing 460 n n C33 C32 UEU sing 461 n n C34 N30 UEU sing 462 n n O29 C28 UEU doub 463 n n C32 N35 UEU sing 464 n n C32 C31 UEU sing 465 n n N30 C28 UEU sing 466 n n N30 C31 UEU sing 467 n n C28 C16 UEU sing 468 n n C16 C17 UEU doub 469 n y C16 C15 UEU sing 470 n y C17 C18 UEU sing 471 n y C15 C14 UEU doub 472 n y C18 C13 UEU doub 473 n y C14 C13 UEU sing 474 n y C14 C19 UEU sing 475 n n C13 C2 UEU sing 476 n n C19 C20 UEU sing 477 n y C19 C24 UEU doub 478 n y C20 C21 UEU doub 479 n y C24 C23 UEU sing 480 n y C2 C1 UEU sing 481 n y C2 C3 UEU doub 482 n y C1 C6 UEU doub 483 n y C21 C22 UEU sing 484 n y C23 C22 UEU doub 485 n y C23 F25 UEU sing 486 n n C22 C26 UEU sing 487 n n F12 C3 UEU sing 488 n n C3 C4 UEU sing 489 n y C6 C5 UEU sing 490 n y C26 N27 UEU trip 491 n n C4 C5 UEU doub 492 n y C5 C7 UEU sing 493 n n C10 C8 UEU sing 494 n n C7 C8 UEU sing 495 n n C8 O11 UEU sing 496 n n C8 C9 UEU sing 497 n n C34 H1 UEU sing 498 n n C34 H2 UEU sing 499 n n C33 H3 UEU sing 500 n n C33 H4 UEU sing 501 n n C32 H5 UEU sing 502 n n N35 H6 UEU sing 503 n n N35 H7 UEU sing 504 n n C31 H9 UEU sing 505 n n C31 H10 UEU sing 506 n n C15 H11 UEU sing 507 n n C24 H12 UEU sing 508 n n C21 H13 UEU sing 509 n n C20 H14 UEU sing 510 n n C17 H15 UEU sing 511 n n C18 H16 UEU sing 512 n n C4 H17 UEU sing 513 n n C6 H18 UEU sing 514 n n C1 H19 UEU sing 515 n n C7 H20 UEU sing 516 n n C7 H21 UEU sing 517 n n O11 H22 UEU sing 518 n n C10 H23 UEU sing 519 n n C10 H24 UEU sing 520 n n C10 H25 UEU sing 521 n n C9 H26 UEU sing 522 n n C9 H27 UEU sing 523 n n C9 H28 UEU sing 524 n n # _atom_sites.entry_id 8JF5 _atom_sites.fract_transf_matrix[1][1] 0.008212 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005583 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004255 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FAD A 1 901 901 FAD FAD . D 4 GOL A 1 902 903 GOL GOL . E 4 GOL A 1 903 904 GOL GOL . F 5 UEU A 1 904 1 UEU L14 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O29 UEU . . . F 5 -66.468 37.973 31.12 1 80.48 ? O29 UEU 904 A 1 HETATM 2 C C28 UEU . . . F 5 -65.806 37.588 32.13 1 83.99 ? C28 UEU 904 A 1 HETATM 3 N N30 UEU . . . F 5 -64.574 37.12 32.052 1 75.48 ? N30 UEU 904 A 1 HETATM 4 C C34 UEU . . . F 5 -63.634 37.674 31.1 1 81.75 ? C34 UEU 904 A 1 HETATM 5 C C33 UEU . . . F 5 -63.251 36.324 30.525 1 69.6 ? C33 UEU 904 A 1 HETATM 6 C C32 UEU . . . F 5 -62.867 35.679 31.807 1 69.97 ? C32 UEU 904 A 1 HETATM 7 N N35 UEU . . . F 5 -61.517 36.267 32.051 1 78.14 ? N35 UEU 904 A 1 HETATM 8 C C31 UEU . . . F 5 -64.008 36.011 32.779 1 67.96 ? C31 UEU 904 A 1 HETATM 9 C C16 UEU . . . F 5 -66.375 37.711 33.508 1 80.33 ? C16 UEU 904 A 1 HETATM 10 C C15 UEU . . . F 5 -66.818 36.668 34.344 1 83.72 ? C15 UEU 904 A 1 HETATM 11 C C14 UEU . . . F 5 -67.38 36.954 35.61 1 71.65 ? C14 UEU 904 A 1 HETATM 12 C C19 UEU . . . F 5 -67.838 35.865 36.483 1 64.96 ? C19 UEU 904 A 1 HETATM 13 C C24 UEU . . . F 5 -69.116 35.766 37.027 1 56.13 ? C24 UEU 904 A 1 HETATM 14 C C23 UEU . . . F 5 -69.366 34.632 37.828 1 63.97 ? C23 UEU 904 A 1 HETATM 15 F F25 UEU . . . F 5 -70.537 34.378 38.418 1 80.1 ? F25 UEU 904 A 1 HETATM 16 C C22 UEU . . . F 5 -68.424 33.651 38.068 1 68.4 ? C22 UEU 904 A 1 HETATM 17 C C26 UEU . . . F 5 -68.711 32.613 38.814 1 84.6 ? C26 UEU 904 A 1 HETATM 18 N N27 UEU . . . F 5 -68.972 31.694 39.504 1 85.57 ? N27 UEU 904 A 1 HETATM 19 C C21 UEU . . . F 5 -67.167 33.785 37.503 1 67.25 ? C21 UEU 904 A 1 HETATM 20 C C20 UEU . . . F 5 -66.871 34.89 36.725 1 66.08 ? C20 UEU 904 A 1 HETATM 21 C C17 UEU . . . F 5 -66.464 38.989 33.938 1 69.53 ? C17 UEU 904 A 1 HETATM 22 C C18 UEU . . . F 5 -67.007 39.23 35.176 1 78.23 ? C18 UEU 904 A 1 HETATM 23 C C13 UEU . . . F 5 -67.476 38.246 36.017 1 77.02 ? C13 UEU 904 A 1 HETATM 24 C C2 UEU . . . F 5 -67.99 38.731 37.319 1 84.15 ? C2 UEU 904 A 1 HETATM 25 C C3 UEU . . . F 5 -67.246 38.398 38.42 1 89.37 ? C3 UEU 904 A 1 HETATM 26 F F12 UEU . . . F 5 -66.161 37.616 38.326 1 104.13 ? F12 UEU 904 A 1 HETATM 27 C C4 UEU . . . F 5 -67.636 38.814 39.647 1 88.42 ? C4 UEU 904 A 1 HETATM 28 C C5 UEU . . . F 5 -68.756 39.593 39.758 1 93.85 ? C5 UEU 904 A 1 HETATM 29 C C6 UEU . . . F 5 -69.511 39.997 38.646 1 88.77 ? C6 UEU 904 A 1 HETATM 30 C C1 UEU . . . F 5 -69.11 39.563 37.408 1 84.2 ? C1 UEU 904 A 1 HETATM 31 C C7 UEU . . . F 5 -69.032 40.049 41.168 1 96.4 ? C7 UEU 904 A 1 HETATM 32 C C8 UEU . . . F 5 -68.054 41.223 41.574 1 81.77 ? C8 UEU 904 A 1 HETATM 33 O O11 UEU . . . F 5 -67.071 40.75 42.463 1 82.95 ? O11 UEU 904 A 1 HETATM 34 C C10 UEU . . . F 5 -67.256 42.033 40.482 1 69.96 ? C10 UEU 904 A 1 HETATM 35 C C9 UEU . . . F 5 -68.875 42.061 42.525 1 73.38 ? C9 UEU 904 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 213 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #