data_8JFA
#
_model_server_result.job_id            mWTFD-DCxXAOKk3zcwbLDw 
_model_server_result.datetime_utc      '2024-11-24 00:49:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jfa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":301}' 
#
_entry.id    8JFA 
#
_exptl.entry_id    8JFA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.92 
_cell.angle_gamma         90 
_cell.entry_id            8JFA 
_cell.length_a            139.093 
_cell.length_b            79.435 
_cell.length_c            151.951 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JFA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,G,H,I,J,M,N 1 1 
E,F,K,L,O,P 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 237 n n 
PA O2A NAP sing 238 n n 
PA O5B NAP sing 239 n n 
PA O3 NAP sing 240 n n 
O2A HOA2 NAP sing 241 n n 
O5B C5B NAP sing 242 n n 
C5B C4B NAP sing 243 n n 
C5B H51A NAP sing 244 n n 
C5B H52A NAP sing 245 n n 
C4B O4B NAP sing 246 n n 
C4B C3B NAP sing 247 n n 
C4B H4B NAP sing 248 n n 
O4B C1B NAP sing 249 n n 
C3B O3B NAP sing 250 n n 
C3B C2B NAP sing 251 n n 
C3B H3B NAP sing 252 n n 
O3B HO3A NAP sing 253 n n 
C2B O2B NAP sing 254 n n 
C2B C1B NAP sing 255 n n 
C2B H2B NAP sing 256 n n 
O2B P2B NAP sing 257 n n 
C1B N9A NAP sing 258 n n 
C1B H1B NAP sing 259 n n 
N9A C8A NAP sing 260 n y 
N9A C4A NAP sing 261 n y 
C8A N7A NAP doub 262 n y 
C8A H8A NAP sing 263 n n 
N7A C5A NAP sing 264 n y 
C5A C6A NAP sing 265 n y 
C5A C4A NAP doub 266 n y 
C6A N6A NAP sing 267 n n 
C6A N1A NAP doub 268 n y 
N6A H61A NAP sing 269 n n 
N6A H62A NAP sing 270 n n 
N1A C2A NAP sing 271 n y 
C2A N3A NAP doub 272 n y 
C2A H2A NAP sing 273 n n 
N3A C4A NAP sing 274 n y 
O3 PN NAP sing 275 n n 
PN O1N NAP doub 276 n n 
PN O2N NAP sing 277 n n 
PN O5D NAP sing 278 n n 
O5D C5D NAP sing 279 n n 
C5D C4D NAP sing 280 n n 
C5D H51N NAP sing 281 n n 
C5D H52N NAP sing 282 n n 
C4D O4D NAP sing 283 n n 
C4D C3D NAP sing 284 n n 
C4D H4D NAP sing 285 n n 
O4D C1D NAP sing 286 n n 
C3D O3D NAP sing 287 n n 
C3D C2D NAP sing 288 n n 
C3D H3D NAP sing 289 n n 
O3D HO3N NAP sing 290 n n 
C2D O2D NAP sing 291 n n 
C2D C1D NAP sing 292 n n 
C2D H2D NAP sing 293 n n 
O2D HO2N NAP sing 294 n n 
C1D N1N NAP sing 295 n n 
C1D H1D NAP sing 296 n n 
N1N C2N NAP sing 297 n y 
N1N C6N NAP doub 298 n y 
C2N C3N NAP doub 299 n y 
C2N H2N NAP sing 300 n n 
C3N C7N NAP sing 301 n n 
C3N C4N NAP sing 302 n y 
C7N O7N NAP doub 303 n n 
C7N N7N NAP sing 304 n n 
N7N H71N NAP sing 305 n n 
N7N H72N NAP sing 306 n n 
C4N C5N NAP doub 307 n y 
C4N H4N NAP sing 308 n n 
C5N C6N NAP sing 309 n y 
C5N H5N NAP sing 310 n n 
C6N H6N NAP sing 311 n n 
P2B O1X NAP doub 312 n n 
P2B O2X NAP sing 313 n n 
P2B O3X NAP sing 314 n n 
O2X HOP2 NAP sing 315 n n 
O3X HOP3 NAP sing 316 n n 
#
_atom_sites.entry_id                     8JFA 
_atom_sites.fract_transf_matrix[1][1]    0.007189 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002187 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012589 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006879 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 NAP A 1 301 301 NAP NAP . 
H 2 NAP B 1 301 301 NAP NAP . 
I 2 NAP C 1 301 301 NAP NAP . 
J 2 NAP D 1 301 301 NAP NAP . 
K 2 NAP E 1 301 301 NAP NAP . 
L 2 NAP F 1 301 301 NAP NAP . 
M 3 HOH A 1 401 4 HOH HOH . 
N 3 HOH C 1 401 5 HOH HOH . 
N 3 HOH C 2 402 3 HOH HOH . 
O 3 HOH E 1 401 2 HOH HOH . 
P 3 HOH F 1 401 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . I 2 -24.612 -1.908 -72.279 1 190.06 ? PA NAP 301 C 1 
HETATM 2 O O1A NAP . . . I 2 -25.663 -2.677 -72.991 1 115.05 ? O1A NAP 301 C 1 
HETATM 3 O O2A NAP . . . I 2 -23.156 -2.024 -72.628 1 131.17 ? O2A NAP 301 C 1 
HETATM 4 O O5B NAP . . . I 2 -24.938 -0.365 -72.125 1 118.48 ? O5B NAP 301 C 1 
HETATM 5 C C5B NAP . . . I 2 -23.75 0.396 -71.621 1 109.83 ? C5B NAP 301 C 1 
HETATM 6 C C4B NAP . . . I 2 -23.694 1.756 -72.273 1 110.64 ? C4B NAP 301 C 1 
HETATM 7 O O4B NAP . . . I 2 -22.821 2.711 -71.59 1 100.8 ? O4B NAP 301 C 1 
HETATM 8 C C3B NAP . . . I 2 -23.306 1.768 -73.76 1 111.12 ? C3B NAP 301 C 1 
HETATM 9 O O3B NAP . . . I 2 -24.162 2.626 -74.511 1 110.02 ? O3B NAP 301 C 1 
HETATM 10 C C2B NAP . . . I 2 -21.872 2.254 -73.65 1 105.49 ? C2B NAP 301 C 1 
HETATM 11 O O2B NAP . . . I 2 -20.746 2.268 -74.504 1 110.74 ? O2B NAP 301 C 1 
HETATM 12 C C1B NAP . . . I 2 -22.036 3.331 -72.609 1 100.01 ? C1B NAP 301 C 1 
HETATM 13 N N9A NAP . . . I 2 -20.779 3.9 -72.134 1 94.11 ? N9A NAP 301 C 1 
HETATM 14 C C8A NAP . . . I 2 -19.671 3.237 -71.682 1 94.42 ? C8A NAP 301 C 1 
HETATM 15 N N7A NAP . . . I 2 -18.7 4.022 -71.317 1 87.22 ? N7A NAP 301 C 1 
HETATM 16 C C5A NAP . . . I 2 -19.188 5.283 -71.541 1 84.49 ? C5A NAP 301 C 1 
HETATM 17 C C6A NAP . . . I 2 -18.622 6.555 -71.347 1 89.53 ? C6A NAP 301 C 1 
HETATM 18 N N6A NAP . . . I 2 -17.399 6.716 -70.866 1 86.85 ? N6A NAP 301 C 1 
HETATM 19 N N1A NAP . . . I 2 -19.375 7.641 -71.671 1 95.96 ? N1A NAP 301 C 1 
HETATM 20 C C2A NAP . . . I 2 -20.602 7.425 -72.147 1 98.28 ? C2A NAP 301 C 1 
HETATM 21 N N3A NAP . . . I 2 -21.224 6.272 -72.371 1 98.4 ? N3A NAP 301 C 1 
HETATM 22 C C4A NAP . . . I 2 -20.467 5.228 -72.048 1 89.73 ? C4A NAP 301 C 1 
HETATM 23 O O3 NAP . . . I 2 -24.73 -2.287 -70.696 1 118.97 ? O3 NAP 301 C 1 
HETATM 24 P PN NAP . . . I 2 -25.955 -2.732 -69.724 1 104.17 ? PN NAP 301 C 1 
HETATM 25 O O1N NAP . . . I 2 -25.412 -3.87 -68.925 1 105.94 ? O1N NAP 301 C 1 
HETATM 26 O O2N NAP . . . I 2 -27.244 -3.053 -70.41 1 98.66 ? O2N NAP 301 C 1 
HETATM 27 O O5D NAP . . . I 2 -26.192 -1.476 -68.786 1 94.75 ? O5D NAP 301 C 1 
HETATM 28 C C5D NAP . . . I 2 -25.23 -0.426 -68.593 1 97.66 ? C5D NAP 301 C 1 
HETATM 29 C C4D NAP . . . I 2 -24.97 -0.256 -67.111 1 94.35 ? C4D NAP 301 C 1 
HETATM 30 O O4D NAP . . . I 2 -25.582 -1.352 -66.486 1 91.94 ? O4D NAP 301 C 1 
HETATM 31 C C3D NAP . . . I 2 -23.505 -0.242 -66.583 1 89.87 ? C3D NAP 301 C 1 
HETATM 32 O O3D NAP . . . I 2 -23.14 0.742 -65.61 1 86.55 ? O3D NAP 301 C 1 
HETATM 33 C C2D NAP . . . I 2 -23.304 -1.634 -65.962 1 81.72 ? C2D NAP 301 C 1 
HETATM 34 O O2D NAP . . . I 2 -22.084 -1.361 -65.24 1 86.7 ? O2D NAP 301 C 1 
HETATM 35 C C1D NAP . . . I 2 -24.773 -1.737 -65.424 1 86.93 ? C1D NAP 301 C 1 
HETATM 36 N N1N NAP . . . I 2 -25.305 -3.043 -64.943 1 85.55 ? N1N NAP 301 C 1 
HETATM 37 C C2N NAP . . . I 2 -25.357 -4.106 -65.818 1 85.18 ? C2N NAP 301 C 1 
HETATM 38 C C3N NAP . . . I 2 -25.87 -5.319 -65.334 1 82.07 ? C3N NAP 301 C 1 
HETATM 39 C C7N NAP . . . I 2 -26.475 -6.332 -66.298 1 83.03 ? C7N NAP 301 C 1 
HETATM 40 O O7N NAP . . . I 2 -26.638 -7.478 -65.95 1 81.87 ? O7N NAP 301 C 1 
HETATM 41 N N7N NAP . . . I 2 -26.811 -5.931 -67.515 1 85.2 ? N7N NAP 301 C 1 
HETATM 42 C C4N NAP . . . I 2 -25.951 -5.47 -63.987 1 78.71 ? C4N NAP 301 C 1 
HETATM 43 C C5N NAP . . . I 2 -25.326 -4.543 -63.212 1 81.25 ? C5N NAP 301 C 1 
HETATM 44 C C6N NAP . . . I 2 -25.316 -3.251 -63.7 1 80.41 ? C6N NAP 301 C 1 
HETATM 45 P P2B NAP . . . I 2 -20.673 2.333 -76.094 1 123.89 ? P2B NAP 301 C 1 
HETATM 46 O O1X NAP . . . I 2 -20.512 3.735 -76.676 1 112.41 ? O1X NAP 301 C 1 
HETATM 47 O O2X NAP . . . I 2 -19.408 1.519 -76.158 1 119.12 ? O2X NAP 301 C 1 
HETATM 48 O O3X NAP . . . I 2 -21.909 1.597 -76.67 1 110.55 ? O3X NAP 301 C 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           48 
#