data_8JFA
#
_model_server_result.job_id            KtVva349mtV_Vaml_B5MXw 
_model_server_result.datetime_utc      '2024-11-27 18:27:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jfa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":301}' 
#
_entry.id    8JFA 
#
_exptl.entry_id    8JFA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.92 
_cell.angle_gamma         90 
_cell.entry_id            8JFA 
_cell.length_a            139.093 
_cell.length_b            79.435 
_cell.length_c            151.951 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JFA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,G,H,I,J,M,N 1 1 
E,F,K,L,O,P 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 237 n n 
PA O2A NAP sing 238 n n 
PA O5B NAP sing 239 n n 
PA O3 NAP sing 240 n n 
O2A HOA2 NAP sing 241 n n 
O5B C5B NAP sing 242 n n 
C5B C4B NAP sing 243 n n 
C5B H51A NAP sing 244 n n 
C5B H52A NAP sing 245 n n 
C4B O4B NAP sing 246 n n 
C4B C3B NAP sing 247 n n 
C4B H4B NAP sing 248 n n 
O4B C1B NAP sing 249 n n 
C3B O3B NAP sing 250 n n 
C3B C2B NAP sing 251 n n 
C3B H3B NAP sing 252 n n 
O3B HO3A NAP sing 253 n n 
C2B O2B NAP sing 254 n n 
C2B C1B NAP sing 255 n n 
C2B H2B NAP sing 256 n n 
O2B P2B NAP sing 257 n n 
C1B N9A NAP sing 258 n n 
C1B H1B NAP sing 259 n n 
N9A C8A NAP sing 260 n y 
N9A C4A NAP sing 261 n y 
C8A N7A NAP doub 262 n y 
C8A H8A NAP sing 263 n n 
N7A C5A NAP sing 264 n y 
C5A C6A NAP sing 265 n y 
C5A C4A NAP doub 266 n y 
C6A N6A NAP sing 267 n n 
C6A N1A NAP doub 268 n y 
N6A H61A NAP sing 269 n n 
N6A H62A NAP sing 270 n n 
N1A C2A NAP sing 271 n y 
C2A N3A NAP doub 272 n y 
C2A H2A NAP sing 273 n n 
N3A C4A NAP sing 274 n y 
O3 PN NAP sing 275 n n 
PN O1N NAP doub 276 n n 
PN O2N NAP sing 277 n n 
PN O5D NAP sing 278 n n 
O5D C5D NAP sing 279 n n 
C5D C4D NAP sing 280 n n 
C5D H51N NAP sing 281 n n 
C5D H52N NAP sing 282 n n 
C4D O4D NAP sing 283 n n 
C4D C3D NAP sing 284 n n 
C4D H4D NAP sing 285 n n 
O4D C1D NAP sing 286 n n 
C3D O3D NAP sing 287 n n 
C3D C2D NAP sing 288 n n 
C3D H3D NAP sing 289 n n 
O3D HO3N NAP sing 290 n n 
C2D O2D NAP sing 291 n n 
C2D C1D NAP sing 292 n n 
C2D H2D NAP sing 293 n n 
O2D HO2N NAP sing 294 n n 
C1D N1N NAP sing 295 n n 
C1D H1D NAP sing 296 n n 
N1N C2N NAP sing 297 n y 
N1N C6N NAP doub 298 n y 
C2N C3N NAP doub 299 n y 
C2N H2N NAP sing 300 n n 
C3N C7N NAP sing 301 n n 
C3N C4N NAP sing 302 n y 
C7N O7N NAP doub 303 n n 
C7N N7N NAP sing 304 n n 
N7N H71N NAP sing 305 n n 
N7N H72N NAP sing 306 n n 
C4N C5N NAP doub 307 n y 
C4N H4N NAP sing 308 n n 
C5N C6N NAP sing 309 n y 
C5N H5N NAP sing 310 n n 
C6N H6N NAP sing 311 n n 
P2B O1X NAP doub 312 n n 
P2B O2X NAP sing 313 n n 
P2B O3X NAP sing 314 n n 
O2X HOP2 NAP sing 315 n n 
O3X HOP3 NAP sing 316 n n 
#
_atom_sites.entry_id                     8JFA 
_atom_sites.fract_transf_matrix[1][1]    0.007189 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002187 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012589 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006879 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 NAP A 1 301 301 NAP NAP . 
H 2 NAP B 1 301 301 NAP NAP . 
I 2 NAP C 1 301 301 NAP NAP . 
J 2 NAP D 1 301 301 NAP NAP . 
K 2 NAP E 1 301 301 NAP NAP . 
L 2 NAP F 1 301 301 NAP NAP . 
M 3 HOH A 1 401 4 HOH HOH . 
N 3 HOH C 1 401 5 HOH HOH . 
N 3 HOH C 2 402 3 HOH HOH . 
O 3 HOH E 1 401 2 HOH HOH . 
P 3 HOH F 1 401 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . J 2 1.515 5.845 -42.895 1 108.35 ? PA NAP 301 D 1 
HETATM 2 O O1A NAP . . . J 2 1.949 6.191 -41.516 1 107.43 ? O1A NAP 301 D 1 
HETATM 3 O O2A NAP . . . J 2 1.512 6.829 -44.034 1 109.54 ? O2A NAP 301 D 1 
HETATM 4 O O5B NAP . . . J 2 2.175 4.511 -43.43 1 103.26 ? O5B NAP 301 D 1 
HETATM 5 C C5B NAP . . . J 2 1.894 4.308 -44.885 1 100.99 ? C5B NAP 301 D 1 
HETATM 6 C C4B NAP . . . J 2 3.099 3.708 -45.564 1 100.06 ? C4B NAP 301 D 1 
HETATM 7 O O4B NAP . . . J 2 2.813 3.151 -46.884 1 99.94 ? O4B NAP 301 D 1 
HETATM 8 C C3B NAP . . . J 2 4.293 4.656 -45.719 1 102.88 ? C3B NAP 301 D 1 
HETATM 9 O O3B NAP . . . J 2 5.53 4.025 -45.387 1 96.95 ? O3B NAP 301 D 1 
HETATM 10 C C2B NAP . . . J 2 4.136 5.021 -47.184 1 101.25 ? C2B NAP 301 D 1 
HETATM 11 O O2B NAP . . . J 2 4.636 6.067 -47.986 1 102.92 ? O2B NAP 301 D 1 
HETATM 12 C C1B NAP . . . J 2 3.82 3.658 -47.762 1 98.76 ? C1B NAP 301 D 1 
HETATM 13 N N9A NAP . . . J 2 3.446 3.617 -49.173 1 92.1 ? N9A NAP 301 D 1 
HETATM 14 C C8A NAP . . . J 2 2.498 4.368 -49.819 1 92.55 ? C8A NAP 301 D 1 
HETATM 15 N N7A NAP . . . J 2 2.387 4.098 -51.085 1 93.12 ? N7A NAP 301 D 1 
HETATM 16 C C5A NAP . . . J 2 3.315 3.104 -51.294 1 93.13 ? C5A NAP 301 D 1 
HETATM 17 C C6A NAP . . . J 2 3.684 2.387 -52.449 1 89.52 ? C6A NAP 301 D 1 
HETATM 18 N N6A NAP . . . J 2 3.108 2.616 -53.616 1 88.61 ? N6A NAP 301 D 1 
HETATM 19 N N1A NAP . . . J 2 4.657 1.438 -52.336 1 90.26 ? N1A NAP 301 D 1 
HETATM 20 C C2A NAP . . . J 2 5.204 1.252 -51.133 1 90.9 ? C2A NAP 301 D 1 
HETATM 21 N N3A NAP . . . J 2 4.939 1.874 -49.985 1 89.21 ? N3A NAP 301 D 1 
HETATM 22 C C4A NAP . . . J 2 3.979 2.791 -50.124 1 90.43 ? C4A NAP 301 D 1 
HETATM 23 O O3 NAP . . . J 2 -0.003 5.262 -42.753 1 108.04 ? O3 NAP 301 D 1 
HETATM 24 P PN NAP . . . J 2 -0.796 4.514 -41.543 1 99.92 ? PN NAP 301 D 1 
HETATM 25 O O1N NAP . . . J 2 -2.109 5.224 -41.435 1 96.42 ? O1N NAP 301 D 1 
HETATM 26 O O2N NAP . . . J 2 -0.036 4.467 -40.259 1 93.15 ? O2N NAP 301 D 1 
HETATM 27 O O5D NAP . . . J 2 -1.031 3.029 -42.074 1 90.22 ? O5D NAP 301 D 1 
HETATM 28 C C5D NAP . . . J 2 -0.813 2.611 -43.435 1 88.95 ? C5D NAP 301 D 1 
HETATM 29 C C4D NAP . . . J 2 -1.979 1.782 -43.939 1 87.33 ? C4D NAP 301 D 1 
HETATM 30 O O4D NAP . . . J 2 -2.967 1.829 -42.942 1 87.23 ? O4D NAP 301 D 1 
HETATM 31 C C3D NAP . . . J 2 -2.71 2.21 -45.249 1 90.97 ? C3D NAP 301 D 1 
HETATM 32 O O3D NAP . . . J 2 -3.199 1.179 -46.111 1 86.45 ? O3D NAP 301 D 1 
HETATM 33 C C2D NAP . . . J 2 -3.888 3.072 -44.749 1 87.27 ? C2D NAP 301 D 1 
HETATM 34 O O2D NAP . . . J 2 -4.615 3.293 -45.982 1 85.82 ? O2D NAP 301 D 1 
HETATM 35 C C1D NAP . . . J 2 -4.193 2.097 -43.556 1 83.72 ? C1D NAP 301 D 1 
HETATM 36 N N1N NAP . . . J 2 -5.13 2.523 -42.485 1 82.69 ? N1N NAP 301 D 1 
HETATM 37 C C2N NAP . . . J 2 -4.885 3.685 -41.782 1 85.26 ? C2N NAP 301 D 1 
HETATM 38 C C3N NAP . . . J 2 -5.786 4.011 -40.751 1 86.86 ? C3N NAP 301 D 1 
HETATM 39 C C7N NAP . . . J 2 -5.383 4.948 -39.619 1 89.51 ? C7N NAP 301 D 1 
HETATM 40 O O7N NAP . . . J 2 -6.238 5.454 -38.924 1 78.8 ? O7N NAP 301 D 1 
HETATM 41 N N7N NAP . . . J 2 -4.092 5.19 -39.424 1 92.42 ? N7N NAP 301 D 1 
HETATM 42 C C4N NAP . . . J 2 -6.964 3.341 -40.715 1 81.36 ? C4N NAP 301 D 1 
HETATM 43 C C5N NAP . . . J 2 -7.325 2.631 -41.818 1 83.87 ? C5N NAP 301 D 1 
HETATM 44 C C6N NAP . . . J 2 -6.296 2.039 -42.524 1 85.05 ? C6N NAP 301 D 1 
HETATM 45 P P2B NAP . . . J 2 6.009 6.847 -47.815 1 112.14 ? P2B NAP 301 D 1 
HETATM 46 O O1X NAP . . . J 2 7.196 6.28 -48.595 1 100.11 ? O1X NAP 301 D 1 
HETATM 47 O O2X NAP . . . J 2 5.483 8.137 -48.386 1 109.85 ? O2X NAP 301 D 1 
HETATM 48 O O3X NAP . . . J 2 6.293 6.927 -46.299 1 115.43 ? O3X NAP 301 D 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#