data_8JFA
#
_model_server_result.job_id            c8C-dk2wRljAktqYjxjf_g 
_model_server_result.datetime_utc      '2024-11-27 18:19:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jfa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":301}' 
#
_entry.id    8JFA 
#
_exptl.entry_id    8JFA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.92 
_cell.angle_gamma         90 
_cell.entry_id            8JFA 
_cell.length_a            139.093 
_cell.length_b            79.435 
_cell.length_c            151.951 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JFA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,G,H,I,J,M,N 1 1 
E,F,K,L,O,P 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 237 n n 
PA O2A NAP sing 238 n n 
PA O5B NAP sing 239 n n 
PA O3 NAP sing 240 n n 
O2A HOA2 NAP sing 241 n n 
O5B C5B NAP sing 242 n n 
C5B C4B NAP sing 243 n n 
C5B H51A NAP sing 244 n n 
C5B H52A NAP sing 245 n n 
C4B O4B NAP sing 246 n n 
C4B C3B NAP sing 247 n n 
C4B H4B NAP sing 248 n n 
O4B C1B NAP sing 249 n n 
C3B O3B NAP sing 250 n n 
C3B C2B NAP sing 251 n n 
C3B H3B NAP sing 252 n n 
O3B HO3A NAP sing 253 n n 
C2B O2B NAP sing 254 n n 
C2B C1B NAP sing 255 n n 
C2B H2B NAP sing 256 n n 
O2B P2B NAP sing 257 n n 
C1B N9A NAP sing 258 n n 
C1B H1B NAP sing 259 n n 
N9A C8A NAP sing 260 n y 
N9A C4A NAP sing 261 n y 
C8A N7A NAP doub 262 n y 
C8A H8A NAP sing 263 n n 
N7A C5A NAP sing 264 n y 
C5A C6A NAP sing 265 n y 
C5A C4A NAP doub 266 n y 
C6A N6A NAP sing 267 n n 
C6A N1A NAP doub 268 n y 
N6A H61A NAP sing 269 n n 
N6A H62A NAP sing 270 n n 
N1A C2A NAP sing 271 n y 
C2A N3A NAP doub 272 n y 
C2A H2A NAP sing 273 n n 
N3A C4A NAP sing 274 n y 
O3 PN NAP sing 275 n n 
PN O1N NAP doub 276 n n 
PN O2N NAP sing 277 n n 
PN O5D NAP sing 278 n n 
O5D C5D NAP sing 279 n n 
C5D C4D NAP sing 280 n n 
C5D H51N NAP sing 281 n n 
C5D H52N NAP sing 282 n n 
C4D O4D NAP sing 283 n n 
C4D C3D NAP sing 284 n n 
C4D H4D NAP sing 285 n n 
O4D C1D NAP sing 286 n n 
C3D O3D NAP sing 287 n n 
C3D C2D NAP sing 288 n n 
C3D H3D NAP sing 289 n n 
O3D HO3N NAP sing 290 n n 
C2D O2D NAP sing 291 n n 
C2D C1D NAP sing 292 n n 
C2D H2D NAP sing 293 n n 
O2D HO2N NAP sing 294 n n 
C1D N1N NAP sing 295 n n 
C1D H1D NAP sing 296 n n 
N1N C2N NAP sing 297 n y 
N1N C6N NAP doub 298 n y 
C2N C3N NAP doub 299 n y 
C2N H2N NAP sing 300 n n 
C3N C7N NAP sing 301 n n 
C3N C4N NAP sing 302 n y 
C7N O7N NAP doub 303 n n 
C7N N7N NAP sing 304 n n 
N7N H71N NAP sing 305 n n 
N7N H72N NAP sing 306 n n 
C4N C5N NAP doub 307 n y 
C4N H4N NAP sing 308 n n 
C5N C6N NAP sing 309 n y 
C5N H5N NAP sing 310 n n 
C6N H6N NAP sing 311 n n 
P2B O1X NAP doub 312 n n 
P2B O2X NAP sing 313 n n 
P2B O3X NAP sing 314 n n 
O2X HOP2 NAP sing 315 n n 
O3X HOP3 NAP sing 316 n n 
#
_atom_sites.entry_id                     8JFA 
_atom_sites.fract_transf_matrix[1][1]    0.007189 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002187 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012589 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006879 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 NAP A 1 301 301 NAP NAP . 
H 2 NAP B 1 301 301 NAP NAP . 
I 2 NAP C 1 301 301 NAP NAP . 
J 2 NAP D 1 301 301 NAP NAP . 
K 2 NAP E 1 301 301 NAP NAP . 
L 2 NAP F 1 301 301 NAP NAP . 
M 3 HOH A 1 401 4 HOH HOH . 
N 3 HOH C 1 401 5 HOH HOH . 
N 3 HOH C 2 402 3 HOH HOH . 
O 3 HOH E 1 401 2 HOH HOH . 
P 3 HOH F 1 401 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . L 2 -22.867 -71.746 0.191 1 95.95 ? PA NAP 301 F 1 
HETATM 2 O O1A NAP . . . L 2 -23.091 -72.59 -1.018 1 103.67 ? O1A NAP 301 F 1 
HETATM 3 O O2A NAP . . . L 2 -23.841 -70.721 0.691 1 79.08 ? O2A NAP 301 F 1 
HETATM 4 O O5B NAP . . . L 2 -22.345 -72.572 1.431 1 90.92 ? O5B NAP 301 F 1 
HETATM 5 C C5B NAP . . . L 2 -22.417 -71.735 2.662 1 84.47 ? C5B NAP 301 F 1 
HETATM 6 C C4B NAP . . . L 2 -22.818 -72.606 3.818 1 89.35 ? C4B NAP 301 F 1 
HETATM 7 O O4B NAP . . . L 2 -22.485 -72.024 5.113 1 83.29 ? O4B NAP 301 F 1 
HETATM 8 C C3B NAP . . . L 2 -24.301 -73.007 3.838 1 88.54 ? C3B NAP 301 F 1 
HETATM 9 O O3B NAP . . . L 2 -24.471 -74.379 4.164 1 95.58 ? O3B NAP 301 F 1 
HETATM 10 C C2B NAP . . . L 2 -24.816 -72.077 4.913 1 88.15 ? C2B NAP 301 F 1 
HETATM 11 O O2B NAP . . . L 2 -26.102 -71.659 5.342 1 97.9 ? O2B NAP 301 F 1 
HETATM 12 C C1B NAP . . . L 2 -23.667 -72.155 5.895 1 85.92 ? C1B NAP 301 F 1 
HETATM 13 N N9A NAP . . . L 2 -23.8 -71.198 6.977 1 85.1 ? N9A NAP 301 F 1 
HETATM 14 C C8A NAP . . . L 2 -24.095 -69.863 6.887 1 84.56 ? C8A NAP 301 F 1 
HETATM 15 N N7A NAP . . . L 2 -24.163 -69.265 8.038 1 86.74 ? N7A NAP 301 F 1 
HETATM 16 C C5A NAP . . . L 2 -23.904 -70.269 8.942 1 91.14 ? C5A NAP 301 F 1 
HETATM 17 C C6A NAP . . . L 2 -23.83 -70.265 10.342 1 90.13 ? C6A NAP 301 F 1 
HETATM 18 N N6A NAP . . . L 2 -24.035 -69.151 11.025 1 87.25 ? N6A NAP 301 F 1 
HETATM 19 N N1A NAP . . . L 2 -23.552 -71.441 10.974 1 88.15 ? N1A NAP 301 F 1 
HETATM 20 C C2A NAP . . . L 2 -23.353 -72.522 10.22 1 90.77 ? C2A NAP 301 F 1 
HETATM 21 N N3A NAP . . . L 2 -23.403 -72.638 8.898 1 91.42 ? N3A NAP 301 F 1 
HETATM 22 C C4A NAP . . . L 2 -23.68 -71.473 8.31 1 90.44 ? C4A NAP 301 F 1 
HETATM 23 O O3 NAP . . . L 2 -21.478 -70.931 -0.044 1 81.87 ? O3 NAP 301 F 1 
HETATM 24 P PN NAP . . . L 2 -20.144 -71.246 -0.894 1 95.53 ? PN NAP 301 F 1 
HETATM 25 O O1N NAP . . . L 2 -19.885 -69.98 -1.65 1 96.62 ? O1N NAP 301 F 1 
HETATM 26 O O2N NAP . . . L 2 -20.202 -72.476 -1.741 1 102.64 ? O2N NAP 301 F 1 
HETATM 27 O O5D NAP . . . L 2 -19.03 -71.47 0.208 1 91.23 ? O5D NAP 301 F 1 
HETATM 28 C C5D NAP . . . L 2 -19.181 -71.042 1.567 1 82.99 ? C5D NAP 301 F 1 
HETATM 29 C C4D NAP . . . L 2 -17.962 -70.261 2.003 1 80.79 ? C4D NAP 301 F 1 
HETATM 30 O O4D NAP . . . L 2 -17.179 -69.995 0.865 1 82.76 ? O4D NAP 301 F 1 
HETATM 31 C C3D NAP . . . L 2 -18.198 -68.876 2.659 1 78.51 ? C3D NAP 301 F 1 
HETATM 32 O O3D NAP . . . L 2 -17.31 -68.488 3.703 1 72.64 ? O3D NAP 301 F 1 
HETATM 33 C C2D NAP . . . L 2 -18.067 -67.898 1.479 1 73.35 ? C2D NAP 301 F 1 
HETATM 34 O O2D NAP . . . L 2 -18.151 -66.643 2.183 1 74.35 ? O2D NAP 301 F 1 
HETATM 35 C C1D NAP . . . L 2 -16.823 -68.647 0.896 1 76.59 ? C1D NAP 301 F 1 
HETATM 36 N N1N NAP . . . L 2 -16.324 -68.275 -0.458 1 81.56 ? N1N NAP 301 F 1 
HETATM 37 C C2N NAP . . . L 2 -17.186 -68.263 -1.533 1 79.64 ? C2N NAP 301 F 1 
HETATM 38 C C3N NAP . . . L 2 -16.641 -67.953 -2.793 1 82.43 ? C3N NAP 301 F 1 
HETATM 39 C C7N NAP . . . L 2 -17.315 -68.457 -4.075 1 86.5 ? C7N NAP 301 F 1 
HETATM 40 O O7N NAP . . . L 2 -17.014 -68.002 -5.163 1 82.06 ? O7N NAP 301 F 1 
HETATM 41 N N7N NAP . . . L 2 -18.236 -69.406 -3.969 1 81.2 ? N7N NAP 301 F 1 
HETATM 42 C C4N NAP . . . L 2 -15.418 -67.355 -2.807 1 80.51 ? C4N NAP 301 F 1 
HETATM 43 C C5N NAP . . . L 2 -14.919 -66.893 -1.63 1 77.39 ? C5N NAP 301 F 1 
HETATM 44 C C6N NAP . . . L 2 -15.228 -67.653 -0.522 1 80.24 ? C6N NAP 301 F 1 
HETATM 45 P P2B NAP . . . L 2 -27.511 -72.413 5.302 1 102.84 ? P2B NAP 301 F 1 
HETATM 46 O O1X NAP . . . L 2 -27.92 -73.139 6.577 1 96.91 ? O1X NAP 301 F 1 
HETATM 47 O O2X NAP . . . L 2 -28.324 -71.162 5.095 1 87.97 ? O2X NAP 301 F 1 
HETATM 48 O O3X NAP . . . L 2 -27.488 -73.365 4.082 1 99.58 ? O3X NAP 301 F 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           256 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           48 
#