data_8JFG
#
_model_server_result.job_id            5XivN9tdGElhio77L-SHHw 
_model_server_result.datetime_utc      '2024-10-20 05:29:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jfg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":101}' 
#
_entry.id    8JFG 
#
_exptl.entry_id    8JFG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              498.528 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '~{S}-[2-[3-[[(2~{S})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] 3-oxidanylideneoctanethioate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8JFG 
_cell.length_a            85.42 
_cell.length_b            246.93 
_cell.length_c            166.24 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JFG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexameric 6 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,I,N 1 1,2 
C,D,E,F,J,K,L,M 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -85.42 0 83.12 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             N 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C19 H35 N2 O9 P S' 
_chem_comp.formula_weight    498.528 
_chem_comp.id                UHC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '~{S}-[2-[3-[[(2~{S})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] 3-oxidanylideneoctanethioate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C6 C7 UHC sing 436 n n 
C6 C5 UHC sing 437 n n 
C7 C8 UHC sing 438 n n 
C4 C5 UHC sing 439 n n 
C4 C3 UHC sing 440 n n 
C3 O3 UHC doub 441 n n 
C3 C2 UHC sing 442 n n 
C2 C1 UHC sing 443 n n 
C1 O1 UHC doub 444 n n 
C1 S1 UHC sing 445 n n 
S1 C43 UHC sing 446 n n 
N41 C42 UHC sing 447 n n 
N41 C39 UHC sing 448 n n 
O40 C39 UHC doub 449 n n 
C43 C42 UHC sing 450 n n 
C39 C38 UHC sing 451 n n 
C38 C37 UHC sing 452 n n 
C37 N36 UHC sing 453 n n 
N36 C34 UHC sing 454 n n 
C34 O35 UHC doub 455 n n 
C34 C32 UHC sing 456 n n 
C31 C29 UHC sing 457 n n 
C32 C29 UHC sing 458 n n 
C32 O33 UHC sing 459 n n 
C30 C29 UHC sing 460 n n 
C29 C28 UHC sing 461 n n 
O23 P24 UHC doub 462 n n 
C28 O27 UHC sing 463 n n 
O27 P24 UHC sing 464 n n 
P24 O26 UHC sing 465 n n 
P24 O2 UHC sing 466 n n 
C2 H1 UHC sing 467 n n 
C2 H2 UHC sing 468 n n 
C4 H3 UHC sing 469 n n 
C4 H4 UHC sing 470 n n 
C5 H5 UHC sing 471 n n 
C5 H6 UHC sing 472 n n 
C6 H7 UHC sing 473 n n 
C6 H8 UHC sing 474 n n 
C7 H9 UHC sing 475 n n 
C7 H10 UHC sing 476 n n 
C8 H11 UHC sing 477 n n 
C8 H12 UHC sing 478 n n 
C8 H13 UHC sing 479 n n 
O26 H14 UHC sing 480 n n 
C28 H15 UHC sing 481 n n 
C28 H16 UHC sing 482 n n 
C30 H17 UHC sing 483 n n 
C30 H18 UHC sing 484 n n 
C30 H19 UHC sing 485 n n 
C31 H20 UHC sing 486 n n 
C31 H21 UHC sing 487 n n 
C31 H22 UHC sing 488 n n 
C32 H23 UHC sing 489 n n 
O33 H24 UHC sing 490 n n 
N36 H25 UHC sing 491 n n 
C37 H26 UHC sing 492 n n 
C37 H27 UHC sing 493 n n 
C38 H28 UHC sing 494 n n 
C38 H29 UHC sing 495 n n 
N41 H30 UHC sing 496 n n 
C42 H31 UHC sing 497 n n 
C42 H32 UHC sing 498 n n 
C43 H33 UHC sing 499 n n 
C43 H34 UHC sing 500 n n 
O2 H35 UHC sing 501 n n 
#
_atom_sites.entry_id                     8JFG 
_atom_sites.fract_transf_matrix[1][1]    0.011707 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00405 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006015 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 3 NAP A 1 301 301 NAP NAP . 
I 3 NAP B 1 301 301 NAP NAP . 
J 3 NAP C 1 301 301 NAP NAP . 
K 3 NAP D 1 301 301 NAP NAP . 
L 3 NAP E 1 301 301 NAP NAP . 
M 3 NAP F 1 301 301 NAP NAP . 
N 4 UHC G 1 101 101 UHC UHC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 UHC . . . N 4 -57.464 -10.656 46.848 1 75.72 ? C1 UHC 101 G 1 
HETATM 2 O O1 UHC . . . N 4 -58.29 -11.557 46.894 1 68.87 ? O1 UHC 101 G 1 
HETATM 3 S S1 UHC . . . N 4 -57.691 -8.935 47.077 1 93.96 ? S1 UHC 101 G 1 
HETATM 4 C C2 UHC . . . N 4 -56.043 -11.071 46.543 1 77.74 ? C2 UHC 101 G 1 
HETATM 5 C C3 UHC . . . N 4 -56.214 -12.062 45.405 1 68.78 ? C3 UHC 101 G 1 
HETATM 6 O O3 UHC . . . N 4 -56.747 -13.155 45.553 1 66.95 ? O3 UHC 101 G 1 
HETATM 7 C C4 UHC . . . N 4 -55.679 -11.565 44.077 1 66.46 ? C4 UHC 101 G 1 
HETATM 8 C C5 UHC . . . N 4 -54.591 -10.579 44.438 1 58.88 ? C5 UHC 101 G 1 
HETATM 9 C C6 UHC . . . N 4 -53.941 -10.071 43.161 1 71.4 ? C6 UHC 101 G 1 
HETATM 10 C C7 UHC . . . N 4 -53.11 -8.892 43.652 1 75.63 ? C7 UHC 101 G 1 
HETATM 11 C C8 UHC . . . N 4 -53.909 -8.159 44.746 1 76.67 ? C8 UHC 101 G 1 
HETATM 12 O O23 UHC . . . N 4 -50.643 0.615 55.542 1 107.2 ? O23 UHC 101 G 1 
HETATM 13 P P24 UHC . . . N 4 -51.431 -0.019 56.656 1 120.72 ? P24 UHC 101 G 1 
HETATM 14 O O26 UHC . . . N 4 -52.739 0.767 57.181 1 98.27 ? O26 UHC 101 G 1 
HETATM 15 O O27 UHC . . . N 4 -51.904 -1.52 56.319 1 100.85 ? O27 UHC 101 G 1 
HETATM 16 C C28 UHC . . . N 4 -50.838 -2.437 56.05 1 95.9 ? C28 UHC 101 G 1 
HETATM 17 C C29 UHC . . . N 4 -50.789 -3.054 54.642 1 98.26 ? C29 UHC 101 G 1 
HETATM 18 C C30 UHC . . . N 4 -49.449 -3.844 54.564 1 90.18 ? C30 UHC 101 G 1 
HETATM 19 C C31 UHC . . . N 4 -50.731 -1.902 53.628 1 103.73 ? C31 UHC 101 G 1 
HETATM 20 C C32 UHC . . . N 4 -52.132 -3.855 54.445 1 91.45 ? C32 UHC 101 G 1 
HETATM 21 O O33 UHC . . . N 4 -52.614 -4.45 55.661 1 67.1 ? O33 UHC 101 G 1 
HETATM 22 C C34 UHC . . . N 4 -52.168 -4.95 53.349 1 89.46 ? C34 UHC 101 G 1 
HETATM 23 O O35 UHC . . . N 4 -51.648 -6.03 53.582 1 90.05 ? O35 UHC 101 G 1 
HETATM 24 N N36 UHC . . . N 4 -52.781 -4.736 52.164 1 77.21 ? N36 UHC 101 G 1 
HETATM 25 C C37 UHC . . . N 4 -52.793 -5.822 51.176 1 78.83 ? C37 UHC 101 G 1 
HETATM 26 C C38 UHC . . . N 4 -54.126 -5.916 50.408 1 77.45 ? C38 UHC 101 G 1 
HETATM 27 C C39 UHC . . . N 4 -53.88 -6.55 49.03 1 78.85 ? C39 UHC 101 G 1 
HETATM 28 O O40 UHC . . . N 4 -52.757 -6.496 48.513 1 88.02 ? O40 UHC 101 G 1 
HETATM 29 N N41 UHC . . . N 4 -54.916 -7.148 48.425 1 73.05 ? N41 UHC 101 G 1 
HETATM 30 C C42 UHC . . . N 4 -56.296 -7.279 48.908 1 72.65 ? C42 UHC 101 G 1 
HETATM 31 C C43 UHC . . . N 4 -56.788 -8.708 48.647 1 69.35 ? C43 UHC 101 G 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           47 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           482 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           31 
#