data_8JFG
#
_model_server_result.job_id            W2KtvRzugEBULxg-0WWd4A 
_model_server_result.datetime_utc      '2024-11-24 19:22:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jfg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":301}' 
#
_entry.id    8JFG 
#
_exptl.entry_id    8JFG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8JFG 
_cell.length_a            85.42 
_cell.length_b            246.93 
_cell.length_c            166.24 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JFG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexameric 6 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,I,N 1 1,2 
C,D,E,F,J,K,L,M 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -85.42 0 83.12 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 235 n n 
PA O2A NAP sing 236 n n 
PA O5B NAP sing 237 n n 
PA O3 NAP sing 238 n n 
O2A HOA2 NAP sing 239 n n 
O5B C5B NAP sing 240 n n 
C5B C4B NAP sing 241 n n 
C5B H51A NAP sing 242 n n 
C5B H52A NAP sing 243 n n 
C4B O4B NAP sing 244 n n 
C4B C3B NAP sing 245 n n 
C4B H4B NAP sing 246 n n 
O4B C1B NAP sing 247 n n 
C3B O3B NAP sing 248 n n 
C3B C2B NAP sing 249 n n 
C3B H3B NAP sing 250 n n 
O3B HO3A NAP sing 251 n n 
C2B O2B NAP sing 252 n n 
C2B C1B NAP sing 253 n n 
C2B H2B NAP sing 254 n n 
O2B P2B NAP sing 255 n n 
C1B N9A NAP sing 256 n n 
C1B H1B NAP sing 257 n n 
N9A C8A NAP sing 258 n y 
N9A C4A NAP sing 259 n y 
C8A N7A NAP doub 260 n y 
C8A H8A NAP sing 261 n n 
N7A C5A NAP sing 262 n y 
C5A C6A NAP sing 263 n y 
C5A C4A NAP doub 264 n y 
C6A N6A NAP sing 265 n n 
C6A N1A NAP doub 266 n y 
N6A H61A NAP sing 267 n n 
N6A H62A NAP sing 268 n n 
N1A C2A NAP sing 269 n y 
C2A N3A NAP doub 270 n y 
C2A H2A NAP sing 271 n n 
N3A C4A NAP sing 272 n y 
O3 PN NAP sing 273 n n 
PN O1N NAP doub 274 n n 
PN O2N NAP sing 275 n n 
PN O5D NAP sing 276 n n 
O5D C5D NAP sing 277 n n 
C5D C4D NAP sing 278 n n 
C5D H51N NAP sing 279 n n 
C5D H52N NAP sing 280 n n 
C4D O4D NAP sing 281 n n 
C4D C3D NAP sing 282 n n 
C4D H4D NAP sing 283 n n 
O4D C1D NAP sing 284 n n 
C3D O3D NAP sing 285 n n 
C3D C2D NAP sing 286 n n 
C3D H3D NAP sing 287 n n 
O3D HO3N NAP sing 288 n n 
C2D O2D NAP sing 289 n n 
C2D C1D NAP sing 290 n n 
C2D H2D NAP sing 291 n n 
O2D HO2N NAP sing 292 n n 
C1D N1N NAP sing 293 n n 
C1D H1D NAP sing 294 n n 
N1N C2N NAP sing 295 n y 
N1N C6N NAP doub 296 n y 
C2N C3N NAP doub 297 n y 
C2N H2N NAP sing 298 n n 
C3N C7N NAP sing 299 n n 
C3N C4N NAP sing 300 n y 
C7N O7N NAP doub 301 n n 
C7N N7N NAP sing 302 n n 
N7N H71N NAP sing 303 n n 
N7N H72N NAP sing 304 n n 
C4N C5N NAP doub 305 n y 
C4N H4N NAP sing 306 n n 
C5N C6N NAP sing 307 n y 
C5N H5N NAP sing 308 n n 
C6N H6N NAP sing 309 n n 
P2B O1X NAP doub 310 n n 
P2B O2X NAP sing 311 n n 
P2B O3X NAP sing 312 n n 
O2X HOP2 NAP sing 313 n n 
O3X HOP3 NAP sing 314 n n 
#
_atom_sites.entry_id                     8JFG 
_atom_sites.fract_transf_matrix[1][1]    0.011707 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00405 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006015 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 3 NAP A 1 301 301 NAP NAP . 
I 3 NAP B 1 301 301 NAP NAP . 
J 3 NAP C 1 301 301 NAP NAP . 
K 3 NAP D 1 301 301 NAP NAP . 
L 3 NAP E 1 301 301 NAP NAP . 
M 3 NAP F 1 301 301 NAP NAP . 
N 4 UHC G 1 101 101 UHC UHC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . M 3 -89.409 -25.591 70.863 1 109.28 ? PA NAP 301 F 1 
HETATM 2 O O1A NAP . . . M 3 -90.812 -25.102 70.735 1 102.26 ? O1A NAP 301 F 1 
HETATM 3 O O2A NAP . . . M 3 -88.848 -26.454 69.784 1 106.65 ? O2A NAP 301 F 1 
HETATM 4 O O5B NAP . . . M 3 -88.437 -24.346 71.108 1 96.97 ? O5B NAP 301 F 1 
HETATM 5 C C5B NAP . . . M 3 -87.098 -24.425 70.57 1 101.86 ? C5B NAP 301 F 1 
HETATM 6 C C4B NAP . . . M 3 -86.751 -23.1 69.943 1 103.64 ? C4B NAP 301 F 1 
HETATM 7 O O4B NAP . . . M 3 -85.309 -22.975 69.868 1 102.53 ? O4B NAP 301 F 1 
HETATM 8 C C3B NAP . . . M 3 -87.275 -22.874 68.515 1 104.47 ? C3B NAP 301 F 1 
HETATM 9 O O3B NAP . . . M 3 -87.999 -21.654 68.442 1 101.18 ? O3B NAP 301 F 1 
HETATM 10 C C2B NAP . . . M 3 -86.015 -22.854 67.656 1 103.81 ? C2B NAP 301 F 1 
HETATM 11 O O2B NAP . . . M 3 -86.148 -21.921 66.589 1 106.68 ? O2B NAP 301 F 1 
HETATM 12 C C1B NAP . . . M 3 -84.976 -22.36 68.65 1 101.84 ? C1B NAP 301 F 1 
HETATM 13 N N9A NAP . . . M 3 -83.608 -22.721 68.31 1 102.04 ? N9A NAP 301 F 1 
HETATM 14 C C8A NAP . . . M 3 -83.085 -23.985 68.209 1 99.12 ? C8A NAP 301 F 1 
HETATM 15 N N7A NAP . . . M 3 -81.816 -23.995 67.891 1 91.28 ? N7A NAP 301 F 1 
HETATM 16 C C5A NAP . . . M 3 -81.478 -22.655 67.779 1 91.49 ? C5A NAP 301 F 1 
HETATM 17 C C6A NAP . . . M 3 -80.271 -22.005 67.465 1 96.71 ? C6A NAP 301 F 1 
HETATM 18 N N6A NAP . . . M 3 -79.137 -22.641 67.194 1 100.25 ? N6A NAP 301 F 1 
HETATM 19 N N1A NAP . . . M 3 -80.279 -20.652 67.44 1 94.99 ? N1A NAP 301 F 1 
HETATM 20 C C2A NAP . . . M 3 -81.423 -20.015 67.715 1 92.19 ? C2A NAP 301 F 1 
HETATM 21 N N3A NAP . . . M 3 -82.613 -20.519 68.021 1 98.69 ? N3A NAP 301 F 1 
HETATM 22 C C4A NAP . . . M 3 -82.576 -21.86 68.037 1 98.66 ? C4A NAP 301 F 1 
HETATM 23 O O3 NAP . . . M 3 -89.264 -26.361 72.258 1 112.67 ? O3 NAP 301 F 1 
HETATM 24 P PN NAP . . . M 3 -89.743 -25.978 73.736 1 104.97 ? PN NAP 301 F 1 
HETATM 25 O O1N NAP . . . M 3 -90.741 -26.992 74.186 1 96.45 ? O1N NAP 301 F 1 
HETATM 26 O O2N NAP . . . M 3 -90.132 -24.538 73.753 1 103.52 ? O2N NAP 301 F 1 
HETATM 27 O O5D NAP . . . M 3 -88.379 -26.169 74.555 1 89.61 ? O5D NAP 301 F 1 
HETATM 28 C C5D NAP . . . M 3 -88.346 -25.691 75.92 1 88.17 ? C5D NAP 301 F 1 
HETATM 29 C C4D NAP . . . M 3 -86.919 -25.587 76.397 1 88.97 ? C4D NAP 301 F 1 
HETATM 30 O O4D NAP . . . M 3 -86.798 -26.2 77.695 1 81.51 ? O4D NAP 301 F 1 
HETATM 31 C C3D NAP . . . M 3 -85.86 -26.297 75.548 1 78.24 ? C3D NAP 301 F 1 
HETATM 32 O O3D NAP . . . M 3 -84.574 -25.729 75.755 1 80.76 ? O3D NAP 301 F 1 
HETATM 33 C C2D NAP . . . M 3 -85.932 -27.73 76.083 1 79.8 ? C2D NAP 301 F 1 
HETATM 34 O O2D NAP . . . M 3 -84.691 -28.407 75.968 1 85.02 ? O2D NAP 301 F 1 
HETATM 35 C C1D NAP . . . M 3 -86.252 -27.507 77.565 1 82.12 ? C1D NAP 301 F 1 
HETATM 36 N N1N NAP . . . M 3 -87.251 -28.455 78.087 1 78.82 ? N1N NAP 301 F 1 
HETATM 37 C C2N NAP . . . M 3 -88.472 -28.566 77.467 1 82.52 ? C2N NAP 301 F 1 
HETATM 38 C C3N NAP . . . M 3 -89.415 -29.459 77.958 1 84.87 ? C3N NAP 301 F 1 
HETATM 39 C C7N NAP . . . M 3 -90.737 -29.56 77.265 1 88.08 ? C7N NAP 301 F 1 
HETATM 40 O O7N NAP . . . M 3 -91.343 -30.642 77.246 1 86.09 ? O7N NAP 301 F 1 
HETATM 41 N N7N NAP . . . M 3 -91.219 -28.469 76.687 1 94.22 ? N7N NAP 301 F 1 
HETATM 42 C C4N NAP . . . M 3 -89.121 -30.234 79.069 1 80.69 ? C4N NAP 301 F 1 
HETATM 43 C C5N NAP . . . M 3 -87.891 -30.11 79.683 1 78.35 ? C5N NAP 301 F 1 
HETATM 44 C C6N NAP . . . M 3 -86.964 -29.219 79.189 1 77.58 ? C6N NAP 301 F 1 
HETATM 45 P P2B NAP . . . M 3 -86.222 -22.686 65.173 1 113.34 ? P2B NAP 301 F 1 
HETATM 46 O O1X NAP . . . M 3 -86.921 -24.009 65.405 1 109.3 ? O1X NAP 301 F 1 
HETATM 47 O O2X NAP . . . M 3 -87.003 -21.78 64.246 1 98.16 ? O2X NAP 301 F 1 
HETATM 48 O O3X NAP . . . M 3 -84.794 -22.868 64.718 1 112.78 ? O3X NAP 301 F 1 
#
_model_server_stats.io_time_ms              96 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#