data_8JFI
#
_model_server_result.job_id            vPSsUl76E-uorGRkGpnsfQ 
_model_server_result.datetime_utc      '2024-11-24 20:20:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jfi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":301}' 
#
_entry.id    8JFI 
#
_exptl.entry_id    8JFI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8JFI 
_cell.length_a            85.843 
_cell.length_b            252.65 
_cell.length_c            166.44 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JFI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? hexameric 6 author_defined_assembly 1 
? hexameric 6 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,J,K,L,Q,R,W 1 1 
A,B,G,J,K,L,Q,R,W 1 2 
C,D,E,F,H,I,M,N,O,P,S,T,U,V 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -85.843 0 83.22 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            E 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             160 
_struct_conn.ptnr1_auth_asym_id             E 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              159 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            O 
_struct_conn.ptnr2_label_atom_id            O2D 
_struct_conn.ptnr2_label_comp_id            NAP 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             E 
_struct_conn.ptnr2_auth_comp_id             NAP 
_struct_conn.ptnr2_auth_seq_id              301 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.302 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 237 n n 
PA O2A NAP sing 238 n n 
PA O5B NAP sing 239 n n 
PA O3 NAP sing 240 n n 
O2A HOA2 NAP sing 241 n n 
O5B C5B NAP sing 242 n n 
C5B C4B NAP sing 243 n n 
C5B H51A NAP sing 244 n n 
C5B H52A NAP sing 245 n n 
C4B O4B NAP sing 246 n n 
C4B C3B NAP sing 247 n n 
C4B H4B NAP sing 248 n n 
O4B C1B NAP sing 249 n n 
C3B O3B NAP sing 250 n n 
C3B C2B NAP sing 251 n n 
C3B H3B NAP sing 252 n n 
O3B HO3A NAP sing 253 n n 
C2B O2B NAP sing 254 n n 
C2B C1B NAP sing 255 n n 
C2B H2B NAP sing 256 n n 
O2B P2B NAP sing 257 n n 
C1B N9A NAP sing 258 n n 
C1B H1B NAP sing 259 n n 
N9A C8A NAP sing 260 n y 
N9A C4A NAP sing 261 n y 
C8A N7A NAP doub 262 n y 
C8A H8A NAP sing 263 n n 
N7A C5A NAP sing 264 n y 
C5A C6A NAP sing 265 n y 
C5A C4A NAP doub 266 n y 
C6A N6A NAP sing 267 n n 
C6A N1A NAP doub 268 n y 
N6A H61A NAP sing 269 n n 
N6A H62A NAP sing 270 n n 
N1A C2A NAP sing 271 n y 
C2A N3A NAP doub 272 n y 
C2A H2A NAP sing 273 n n 
N3A C4A NAP sing 274 n y 
O3 PN NAP sing 275 n n 
PN O1N NAP doub 276 n n 
PN O2N NAP sing 277 n n 
PN O5D NAP sing 278 n n 
O5D C5D NAP sing 279 n n 
C5D C4D NAP sing 280 n n 
C5D H51N NAP sing 281 n n 
C5D H52N NAP sing 282 n n 
C4D O4D NAP sing 283 n n 
C4D C3D NAP sing 284 n n 
C4D H4D NAP sing 285 n n 
O4D C1D NAP sing 286 n n 
C3D O3D NAP sing 287 n n 
C3D C2D NAP sing 288 n n 
C3D H3D NAP sing 289 n n 
O3D HO3N NAP sing 290 n n 
C2D O2D NAP sing 291 n n 
C2D C1D NAP sing 292 n n 
C2D H2D NAP sing 293 n n 
O2D HO2N NAP sing 294 n n 
C1D N1N NAP sing 295 n n 
C1D H1D NAP sing 296 n n 
N1N C2N NAP sing 297 n y 
N1N C6N NAP doub 298 n y 
C2N C3N NAP doub 299 n y 
C2N H2N NAP sing 300 n n 
C3N C7N NAP sing 301 n n 
C3N C4N NAP sing 302 n y 
C7N O7N NAP doub 303 n n 
C7N N7N NAP sing 304 n n 
N7N H71N NAP sing 305 n n 
N7N H72N NAP sing 306 n n 
C4N C5N NAP doub 307 n y 
C4N H4N NAP sing 308 n n 
C5N C6N NAP sing 309 n y 
C5N H5N NAP sing 310 n n 
C6N H6N NAP sing 311 n n 
P2B O1X NAP doub 312 n n 
P2B O2X NAP sing 313 n n 
P2B O3X NAP sing 314 n n 
O2X HOP2 NAP sing 315 n n 
O3X HOP3 NAP sing 316 n n 
#
_atom_sites.entry_id                     8JFI 
_atom_sites.fract_transf_matrix[1][1]    0.011649 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003958 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006008 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 3 NAP A 1 301 301 NAP NAP . 
K 4 UHC A 1 302 101 UHC SHW . 
L 3 NAP B 1 301 301 NAP NAP . 
M 3 NAP C 1 301 301 NAP NAP . 
N 3 NAP D 1 301 301 NAP NAP . 
O 3 NAP E 1 301 301 NAP NAP . 
P 3 NAP F 1 301 301 NAP NAP . 
Q 5 HOH A 1 401 401 HOH HOH . 
Q 5 HOH A 2 402 402 HOH HOH . 
Q 5 HOH A 3 403 403 HOH HOH . 
Q 5 HOH A 4 404 404 HOH HOH . 
Q 5 HOH A 5 405 405 HOH HOH . 
Q 5 HOH A 6 406 406 HOH HOH . 
Q 5 HOH A 7 407 407 HOH HOH . 
Q 5 HOH A 8 408 408 HOH HOH . 
Q 5 HOH A 9 409 409 HOH HOH . 
Q 5 HOH A 10 410 410 HOH HOH . 
Q 5 HOH A 11 411 411 HOH HOH . 
Q 5 HOH A 12 412 412 HOH HOH . 
Q 5 HOH A 13 413 413 HOH HOH . 
Q 5 HOH A 14 414 414 HOH HOH . 
Q 5 HOH A 15 415 415 HOH HOH . 
Q 5 HOH A 16 416 416 HOH HOH . 
Q 5 HOH A 17 417 417 HOH HOH . 
Q 5 HOH A 18 418 418 HOH HOH . 
Q 5 HOH A 19 419 419 HOH HOH . 
Q 5 HOH A 20 420 420 HOH HOH . 
Q 5 HOH A 21 421 421 HOH HOH . 
Q 5 HOH A 22 422 422 HOH HOH . 
Q 5 HOH A 23 423 423 HOH HOH . 
R 5 HOH B 1 401 401 HOH HOH . 
R 5 HOH B 2 402 402 HOH HOH . 
R 5 HOH B 3 403 403 HOH HOH . 
R 5 HOH B 4 404 404 HOH HOH . 
R 5 HOH B 5 405 405 HOH HOH . 
R 5 HOH B 6 406 406 HOH HOH . 
R 5 HOH B 7 407 407 HOH HOH . 
R 5 HOH B 8 408 408 HOH HOH . 
R 5 HOH B 9 409 409 HOH HOH . 
R 5 HOH B 10 410 410 HOH HOH . 
R 5 HOH B 11 411 411 HOH HOH . 
R 5 HOH B 12 412 412 HOH HOH . 
R 5 HOH B 13 413 413 HOH HOH . 
R 5 HOH B 14 414 414 HOH HOH . 
R 5 HOH B 15 415 415 HOH HOH . 
R 5 HOH B 16 416 416 HOH HOH . 
R 5 HOH B 17 417 417 HOH HOH . 
R 5 HOH B 18 418 418 HOH HOH . 
R 5 HOH B 19 419 419 HOH HOH . 
R 5 HOH B 20 420 420 HOH HOH . 
R 5 HOH B 21 421 421 HOH HOH . 
S 5 HOH C 1 401 401 HOH HOH . 
S 5 HOH C 2 402 402 HOH HOH . 
S 5 HOH C 3 403 403 HOH HOH . 
S 5 HOH C 4 404 404 HOH HOH . 
S 5 HOH C 5 405 405 HOH HOH . 
S 5 HOH C 6 406 406 HOH HOH . 
S 5 HOH C 7 407 407 HOH HOH . 
T 5 HOH D 1 401 401 HOH HOH . 
T 5 HOH D 2 402 402 HOH HOH . 
T 5 HOH D 3 403 403 HOH HOH . 
T 5 HOH D 4 404 404 HOH HOH . 
T 5 HOH D 5 405 405 HOH HOH . 
T 5 HOH D 6 406 406 HOH HOH . 
T 5 HOH D 7 407 407 HOH HOH . 
T 5 HOH D 8 408 408 HOH HOH . 
T 5 HOH D 9 409 409 HOH HOH . 
U 5 HOH E 1 401 401 HOH HOH . 
U 5 HOH E 2 402 402 HOH HOH . 
U 5 HOH E 3 403 403 HOH HOH . 
U 5 HOH E 4 404 404 HOH HOH . 
U 5 HOH E 5 405 405 HOH HOH . 
U 5 HOH E 6 406 406 HOH HOH . 
U 5 HOH E 7 407 407 HOH HOH . 
U 5 HOH E 8 408 408 HOH HOH . 
U 5 HOH E 9 409 409 HOH HOH . 
U 5 HOH E 10 410 410 HOH HOH . 
V 5 HOH F 1 401 401 HOH HOH . 
V 5 HOH F 2 402 402 HOH HOH . 
V 5 HOH F 3 403 403 HOH HOH . 
V 5 HOH F 4 404 404 HOH HOH . 
V 5 HOH F 5 405 405 HOH HOH . 
V 5 HOH F 6 406 406 HOH HOH . 
V 5 HOH F 7 407 407 HOH HOH . 
V 5 HOH F 8 408 408 HOH HOH . 
V 5 HOH F 9 409 409 HOH HOH . 
V 5 HOH F 10 410 410 HOH HOH . 
V 5 HOH F 11 411 411 HOH HOH . 
W 5 HOH G 1 201 201 HOH HOH . 
W 5 HOH G 2 202 202 HOH HOH . 
W 5 HOH G 3 203 203 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . L 3 -44.538 -37.393 65.884 1 83.07 ? PA NAP 301 B 1 
HETATM 2 O O1A NAP . . . L 3 -43.651 -38.589 65.978 1 71.8 ? O1A NAP 301 B 1 
HETATM 3 O O2A NAP . . . L 3 -46.044 -37.469 65.965 1 74.04 ? O2A NAP 301 B 1 
HETATM 4 O O5B NAP . . . L 3 -44.024 -36.166 66.762 1 73.76 ? O5B NAP 301 B 1 
HETATM 5 C C5B NAP . . . L 3 -44.952 -35.004 66.643 1 61.43 ? C5B NAP 301 B 1 
HETATM 6 C C4B NAP . . . L 3 -44.936 -34.273 67.953 1 64.3 ? C4B NAP 301 B 1 
HETATM 7 O O4B NAP . . . L 3 -45.835 -33.123 67.948 1 59.62 ? O4B NAP 301 B 1 
HETATM 8 C C3B NAP . . . L 3 -45.272 -35.099 69.198 1 62.24 ? C3B NAP 301 B 1 
HETATM 9 O O3B NAP . . . L 3 -44.527 -34.651 70.333 1 63.43 ? O3B NAP 301 B 1 
HETATM 10 C C2B NAP . . . L 3 -46.737 -34.726 69.26 1 64.71 ? C2B NAP 301 B 1 
HETATM 11 O O2B NAP . . . L 3 -47.868 -35.303 69.854 1 64.24 ? O2B NAP 301 B 1 
HETATM 12 C C1B NAP . . . L 3 -46.596 -33.231 69.141 1 58.69 ? C1B NAP 301 B 1 
HETATM 13 N N9A NAP . . . L 3 -47.806 -32.443 69.032 1 51.2 ? N9A NAP 301 B 1 
HETATM 14 C C8A NAP . . . L 3 -48.887 -32.67 68.223 1 49.01 ? C8A NAP 301 B 1 
HETATM 15 N N7A NAP . . . L 3 -49.819 -31.769 68.347 1 47.8 ? N7A NAP 301 B 1 
HETATM 16 C C5A NAP . . . L 3 -49.32 -30.879 69.286 1 53.13 ? C5A NAP 301 B 1 
HETATM 17 C C6A NAP . . . L 3 -49.84 -29.683 69.855 1 49.05 ? C6A NAP 301 B 1 
HETATM 18 N N6A NAP . . . L 3 -51.022 -29.175 69.532 1 46.04 ? N6A NAP 301 B 1 
HETATM 19 N N1A NAP . . . L 3 -49.072 -29.041 70.773 1 46.45 ? N1A NAP 301 B 1 
HETATM 20 C C2A NAP . . . L 3 -47.885 -29.573 71.084 1 50.05 ? C2A NAP 301 B 1 
HETATM 21 N N3A NAP . . . L 3 -47.302 -30.684 70.625 1 54.92 ? N3A NAP 301 B 1 
HETATM 22 C C4A NAP . . . L 3 -48.07 -31.292 69.717 1 50.68 ? C4A NAP 301 B 1 
HETATM 23 O O3 NAP . . . L 3 -44.196 -36.684 64.459 1 67.85 ? O3 NAP 301 B 1 
HETATM 24 P PN NAP . . . L 3 -42.798 -36.652 63.648 1 64.98 ? PN NAP 301 B 1 
HETATM 25 O O1N NAP . . . L 3 -43.186 -37.195 62.309 1 70.47 ? O1N NAP 301 B 1 
HETATM 26 O O2N NAP . . . L 3 -41.686 -37.407 64.323 1 66.11 ? O2N NAP 301 B 1 
HETATM 27 O O5D NAP . . . L 3 -42.37 -35.114 63.521 1 56.06 ? O5D NAP 301 B 1 
HETATM 28 C C5D NAP . . . L 3 -43.186 -33.976 63.871 1 56.48 ? C5D NAP 301 B 1 
HETATM 29 C C4D NAP . . . L 3 -43.333 -33.042 62.677 1 51.1 ? C4D NAP 301 B 1 
HETATM 30 O O4D NAP . . . L 3 -42.621 -33.634 61.614 1 50.39 ? O4D NAP 301 B 1 
HETATM 31 C C3D NAP . . . L 3 -44.779 -32.762 62.133 1 54.21 ? C3D NAP 301 B 1 
HETATM 32 O O3D NAP . . . L 3 -45.211 -31.412 61.866 1 46.21 ? O3D NAP 301 B 1 
HETATM 33 C C2D NAP . . . L 3 -44.898 -33.659 60.863 1 53.48 ? C2D NAP 301 B 1 
HETATM 34 O O2D NAP . . . L 3 -46.131 -33.182 60.246 1 34.91 ? O2D NAP 301 B 1 
HETATM 35 C C1D NAP . . . L 3 -43.378 -33.526 60.43 1 53.93 ? C1D NAP 301 B 1 
HETATM 36 N N1N NAP . . . L 3 -42.804 -34.484 59.421 1 49.84 ? N1N NAP 301 B 1 
HETATM 37 C C2N NAP . . . L 3 -43.039 -35.837 59.568 1 50.85 ? C2N NAP 301 B 1 
HETATM 38 C C3N NAP . . . L 3 -42.793 -36.658 58.453 1 51.49 ? C3N NAP 301 B 1 
HETATM 39 C C7N NAP . . . L 3 -42.021 -37.966 58.68 1 50.3 ? C7N NAP 301 B 1 
HETATM 40 O O7N NAP . . . L 3 -42.013 -38.877 57.876 1 50.05 ? O7N NAP 301 B 1 
HETATM 41 N N7N NAP . . . L 3 -41.347 -38.08 59.817 1 48.3 ? N7N NAP 301 B 1 
HETATM 42 C C4N NAP . . . L 3 -43.069 -36.1 57.232 1 44.23 ? C4N NAP 301 B 1 
HETATM 43 C C5N NAP . . . L 3 -42.928 -34.742 57.139 1 38.97 ? C5N NAP 301 B 1 
HETATM 44 C C6N NAP . . . L 3 -42.47 -34.063 58.272 1 43.67 ? C6N NAP 301 B 1 
HETATM 45 P P2B NAP . . . L 3 -47.88 -36.13 71.208 1 70.22 ? P2B NAP 301 B 1 
HETATM 46 O O1X NAP . . . L 3 -47.734 -35.304 72.491 1 67.93 ? O1X NAP 301 B 1 
HETATM 47 O O2X NAP . . . L 3 -49.292 -36.556 70.893 1 58.91 ? O2X NAP 301 B 1 
HETATM 48 O O3X NAP . . . L 3 -46.784 -37.233 71.122 1 78 ? O3X NAP 301 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    49 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           48 
#