data_8JFI
#
_model_server_result.job_id            CgDXUogRdAWSG_WatIK4nQ 
_model_server_result.datetime_utc      '2024-11-28 13:25:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jfi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":301}' 
#
_entry.id    8JFI 
#
_exptl.entry_id    8JFI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8JFI 
_cell.length_a            85.843 
_cell.length_b            252.65 
_cell.length_c            166.44 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JFI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? hexameric 6 author_defined_assembly 1 
? hexameric 6 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,J,K,L,Q,R,W 1 1 
A,B,G,J,K,L,Q,R,W 1 2 
C,D,E,F,H,I,M,N,O,P,S,T,U,V 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -85.843 0 83.22 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            E 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             160 
_struct_conn.ptnr1_auth_asym_id             E 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              159 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            O 
_struct_conn.ptnr2_label_atom_id            O2D 
_struct_conn.ptnr2_label_comp_id            NAP 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             E 
_struct_conn.ptnr2_auth_comp_id             NAP 
_struct_conn.ptnr2_auth_seq_id              301 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.302 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 237 n n 
PA O2A NAP sing 238 n n 
PA O5B NAP sing 239 n n 
PA O3 NAP sing 240 n n 
O2A HOA2 NAP sing 241 n n 
O5B C5B NAP sing 242 n n 
C5B C4B NAP sing 243 n n 
C5B H51A NAP sing 244 n n 
C5B H52A NAP sing 245 n n 
C4B O4B NAP sing 246 n n 
C4B C3B NAP sing 247 n n 
C4B H4B NAP sing 248 n n 
O4B C1B NAP sing 249 n n 
C3B O3B NAP sing 250 n n 
C3B C2B NAP sing 251 n n 
C3B H3B NAP sing 252 n n 
O3B HO3A NAP sing 253 n n 
C2B O2B NAP sing 254 n n 
C2B C1B NAP sing 255 n n 
C2B H2B NAP sing 256 n n 
O2B P2B NAP sing 257 n n 
C1B N9A NAP sing 258 n n 
C1B H1B NAP sing 259 n n 
N9A C8A NAP sing 260 n y 
N9A C4A NAP sing 261 n y 
C8A N7A NAP doub 262 n y 
C8A H8A NAP sing 263 n n 
N7A C5A NAP sing 264 n y 
C5A C6A NAP sing 265 n y 
C5A C4A NAP doub 266 n y 
C6A N6A NAP sing 267 n n 
C6A N1A NAP doub 268 n y 
N6A H61A NAP sing 269 n n 
N6A H62A NAP sing 270 n n 
N1A C2A NAP sing 271 n y 
C2A N3A NAP doub 272 n y 
C2A H2A NAP sing 273 n n 
N3A C4A NAP sing 274 n y 
O3 PN NAP sing 275 n n 
PN O1N NAP doub 276 n n 
PN O2N NAP sing 277 n n 
PN O5D NAP sing 278 n n 
O5D C5D NAP sing 279 n n 
C5D C4D NAP sing 280 n n 
C5D H51N NAP sing 281 n n 
C5D H52N NAP sing 282 n n 
C4D O4D NAP sing 283 n n 
C4D C3D NAP sing 284 n n 
C4D H4D NAP sing 285 n n 
O4D C1D NAP sing 286 n n 
C3D O3D NAP sing 287 n n 
C3D C2D NAP sing 288 n n 
C3D H3D NAP sing 289 n n 
O3D HO3N NAP sing 290 n n 
C2D O2D NAP sing 291 n n 
C2D C1D NAP sing 292 n n 
C2D H2D NAP sing 293 n n 
O2D HO2N NAP sing 294 n n 
C1D N1N NAP sing 295 n n 
C1D H1D NAP sing 296 n n 
N1N C2N NAP sing 297 n y 
N1N C6N NAP doub 298 n y 
C2N C3N NAP doub 299 n y 
C2N H2N NAP sing 300 n n 
C3N C7N NAP sing 301 n n 
C3N C4N NAP sing 302 n y 
C7N O7N NAP doub 303 n n 
C7N N7N NAP sing 304 n n 
N7N H71N NAP sing 305 n n 
N7N H72N NAP sing 306 n n 
C4N C5N NAP doub 307 n y 
C4N H4N NAP sing 308 n n 
C5N C6N NAP sing 309 n y 
C5N H5N NAP sing 310 n n 
C6N H6N NAP sing 311 n n 
P2B O1X NAP doub 312 n n 
P2B O2X NAP sing 313 n n 
P2B O3X NAP sing 314 n n 
O2X HOP2 NAP sing 315 n n 
O3X HOP3 NAP sing 316 n n 
#
_atom_sites.entry_id                     8JFI 
_atom_sites.fract_transf_matrix[1][1]    0.011649 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003958 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006008 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 3 NAP A 1 301 301 NAP NAP . 
K 4 UHC A 1 302 101 UHC SHW . 
L 3 NAP B 1 301 301 NAP NAP . 
M 3 NAP C 1 301 301 NAP NAP . 
N 3 NAP D 1 301 301 NAP NAP . 
O 3 NAP E 1 301 301 NAP NAP . 
P 3 NAP F 1 301 301 NAP NAP . 
Q 5 HOH A 1 401 401 HOH HOH . 
Q 5 HOH A 2 402 402 HOH HOH . 
Q 5 HOH A 3 403 403 HOH HOH . 
Q 5 HOH A 4 404 404 HOH HOH . 
Q 5 HOH A 5 405 405 HOH HOH . 
Q 5 HOH A 6 406 406 HOH HOH . 
Q 5 HOH A 7 407 407 HOH HOH . 
Q 5 HOH A 8 408 408 HOH HOH . 
Q 5 HOH A 9 409 409 HOH HOH . 
Q 5 HOH A 10 410 410 HOH HOH . 
Q 5 HOH A 11 411 411 HOH HOH . 
Q 5 HOH A 12 412 412 HOH HOH . 
Q 5 HOH A 13 413 413 HOH HOH . 
Q 5 HOH A 14 414 414 HOH HOH . 
Q 5 HOH A 15 415 415 HOH HOH . 
Q 5 HOH A 16 416 416 HOH HOH . 
Q 5 HOH A 17 417 417 HOH HOH . 
Q 5 HOH A 18 418 418 HOH HOH . 
Q 5 HOH A 19 419 419 HOH HOH . 
Q 5 HOH A 20 420 420 HOH HOH . 
Q 5 HOH A 21 421 421 HOH HOH . 
Q 5 HOH A 22 422 422 HOH HOH . 
Q 5 HOH A 23 423 423 HOH HOH . 
R 5 HOH B 1 401 401 HOH HOH . 
R 5 HOH B 2 402 402 HOH HOH . 
R 5 HOH B 3 403 403 HOH HOH . 
R 5 HOH B 4 404 404 HOH HOH . 
R 5 HOH B 5 405 405 HOH HOH . 
R 5 HOH B 6 406 406 HOH HOH . 
R 5 HOH B 7 407 407 HOH HOH . 
R 5 HOH B 8 408 408 HOH HOH . 
R 5 HOH B 9 409 409 HOH HOH . 
R 5 HOH B 10 410 410 HOH HOH . 
R 5 HOH B 11 411 411 HOH HOH . 
R 5 HOH B 12 412 412 HOH HOH . 
R 5 HOH B 13 413 413 HOH HOH . 
R 5 HOH B 14 414 414 HOH HOH . 
R 5 HOH B 15 415 415 HOH HOH . 
R 5 HOH B 16 416 416 HOH HOH . 
R 5 HOH B 17 417 417 HOH HOH . 
R 5 HOH B 18 418 418 HOH HOH . 
R 5 HOH B 19 419 419 HOH HOH . 
R 5 HOH B 20 420 420 HOH HOH . 
R 5 HOH B 21 421 421 HOH HOH . 
S 5 HOH C 1 401 401 HOH HOH . 
S 5 HOH C 2 402 402 HOH HOH . 
S 5 HOH C 3 403 403 HOH HOH . 
S 5 HOH C 4 404 404 HOH HOH . 
S 5 HOH C 5 405 405 HOH HOH . 
S 5 HOH C 6 406 406 HOH HOH . 
S 5 HOH C 7 407 407 HOH HOH . 
T 5 HOH D 1 401 401 HOH HOH . 
T 5 HOH D 2 402 402 HOH HOH . 
T 5 HOH D 3 403 403 HOH HOH . 
T 5 HOH D 4 404 404 HOH HOH . 
T 5 HOH D 5 405 405 HOH HOH . 
T 5 HOH D 6 406 406 HOH HOH . 
T 5 HOH D 7 407 407 HOH HOH . 
T 5 HOH D 8 408 408 HOH HOH . 
T 5 HOH D 9 409 409 HOH HOH . 
U 5 HOH E 1 401 401 HOH HOH . 
U 5 HOH E 2 402 402 HOH HOH . 
U 5 HOH E 3 403 403 HOH HOH . 
U 5 HOH E 4 404 404 HOH HOH . 
U 5 HOH E 5 405 405 HOH HOH . 
U 5 HOH E 6 406 406 HOH HOH . 
U 5 HOH E 7 407 407 HOH HOH . 
U 5 HOH E 8 408 408 HOH HOH . 
U 5 HOH E 9 409 409 HOH HOH . 
U 5 HOH E 10 410 410 HOH HOH . 
V 5 HOH F 1 401 401 HOH HOH . 
V 5 HOH F 2 402 402 HOH HOH . 
V 5 HOH F 3 403 403 HOH HOH . 
V 5 HOH F 4 404 404 HOH HOH . 
V 5 HOH F 5 405 405 HOH HOH . 
V 5 HOH F 6 406 406 HOH HOH . 
V 5 HOH F 7 407 407 HOH HOH . 
V 5 HOH F 8 408 408 HOH HOH . 
V 5 HOH F 9 409 409 HOH HOH . 
V 5 HOH F 10 410 410 HOH HOH . 
V 5 HOH F 11 411 411 HOH HOH . 
W 5 HOH G 1 201 201 HOH HOH . 
W 5 HOH G 2 202 202 HOH HOH . 
W 5 HOH G 3 203 203 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . P 3 0.127 -56.322 109.349 1 102.94 ? PA NAP 301 F 1 
HETATM 2 O O1A NAP . . . P 3 0.105 -57.593 108.565 1 81.6 ? O1A NAP 301 F 1 
HETATM 3 O O2A NAP . . . P 3 -1.079 -55.842 110.122 1 94.05 ? O2A NAP 301 F 1 
HETATM 4 O O5B NAP . . . P 3 1.44 -56.101 110.247 1 85.32 ? O5B NAP 301 F 1 
HETATM 5 C C5B NAP . . . P 3 1.383 -54.916 111.171 1 65.55 ? C5B NAP 301 F 1 
HETATM 6 C C4B NAP . . . P 3 2.054 -55.225 112.493 1 71.52 ? C4B NAP 301 F 1 
HETATM 7 O O4B NAP . . . P 3 2.377 -54.045 113.299 1 67.13 ? O4B NAP 301 F 1 
HETATM 8 C C3B NAP . . . P 3 1.344 -56.222 113.436 1 80.99 ? C3B NAP 301 F 1 
HETATM 9 O O3B NAP . . . P 3 2.22 -57.285 113.824 1 79.58 ? O3B NAP 301 F 1 
HETATM 10 C C2B NAP . . . P 3 0.942 -55.287 114.571 1 74.12 ? C2B NAP 301 F 1 
HETATM 11 O O2B NAP . . . P 3 0.016 -55.315 115.65 1 79.01 ? O2B NAP 301 F 1 
HETATM 12 C C1B NAP . . . P 3 2.187 -54.437 114.659 1 65.03 ? C1B NAP 301 F 1 
HETATM 13 N N9A NAP . . . P 3 2.089 -53.327 115.598 1 61.66 ? N9A NAP 301 F 1 
HETATM 14 C C8A NAP . . . P 3 1.166 -52.313 115.602 1 64.09 ? C8A NAP 301 F 1 
HETATM 15 N N7A NAP . . . P 3 1.317 -51.451 116.562 1 50.15 ? N7A NAP 301 F 1 
HETATM 16 C C5A NAP . . . P 3 2.413 -51.921 117.236 1 58.07 ? C5A NAP 301 F 1 
HETATM 17 C C6A NAP . . . P 3 3.085 -51.436 118.371 1 63.54 ? C6A NAP 301 F 1 
HETATM 18 N N6A NAP . . . P 3 2.675 -50.337 118.987 1 68.29 ? N6A NAP 301 F 1 
HETATM 19 N N1A NAP . . . P 3 4.164 -52.134 118.835 1 59.41 ? N1A NAP 301 F 1 
HETATM 20 C C2A NAP . . . P 3 4.516 -53.234 118.176 1 61.62 ? C2A NAP 301 F 1 
HETATM 21 N N3A NAP . . . P 3 3.95 -53.78 117.096 1 68.74 ? N3A NAP 301 F 1 
HETATM 22 C C4A NAP . . . P 3 2.899 -53.079 116.666 1 62.47 ? C4A NAP 301 F 1 
HETATM 23 O O3 NAP . . . P 3 0.437 -55.165 108.239 1 94.85 ? O3 NAP 301 F 1 
HETATM 24 P PN NAP . . . P 3 1.099 -55.212 106.757 1 79.91 ? PN NAP 301 F 1 
HETATM 25 O O1N NAP . . . P 3 0.154 -54.454 105.869 1 77.9 ? O1N NAP 301 F 1 
HETATM 26 O O2N NAP . . . P 3 1.374 -56.611 106.296 1 87.61 ? O2N NAP 301 F 1 
HETATM 27 O O5D NAP . . . P 3 2.476 -54.396 106.897 1 76.22 ? O5D NAP 301 F 1 
HETATM 28 C C5D NAP . . . P 3 2.848 -53.604 108.05 1 71.59 ? C5D NAP 301 F 1 
HETATM 29 C C4D NAP . . . P 3 3.526 -52.266 107.733 1 64.26 ? C4D NAP 301 F 1 
HETATM 30 O O4D NAP . . . P 3 3.568 -52.047 106.34 1 58.69 ? O4D NAP 301 F 1 
HETATM 31 C C3D NAP . . . P 3 2.893 -50.952 108.294 1 62.07 ? C3D NAP 301 F 1 
HETATM 32 O O3D NAP . . . P 3 3.737 -49.807 108.469 1 58.6 ? O3D NAP 301 F 1 
HETATM 33 C C2D NAP . . . P 3 1.8 -50.664 107.242 1 62.37 ? C2D NAP 301 F 1 
HETATM 34 O O2D NAP . . . P 3 1.19 -49.446 107.756 1 58.41 ? O2D NAP 301 F 1 
HETATM 35 C C1D NAP . . . P 3 2.825 -50.887 106.061 1 62.09 ? C1D NAP 301 F 1 
HETATM 36 N N1N NAP . . . P 3 2.337 -50.985 104.651 1 57.95 ? N1N NAP 301 F 1 
HETATM 37 C C2N NAP . . . P 3 1.29 -51.814 104.272 1 60.84 ? C2N NAP 301 F 1 
HETATM 38 C C3N NAP . . . P 3 0.761 -51.626 102.969 1 66.84 ? C3N NAP 301 F 1 
HETATM 39 C C7N NAP . . . P 3 -0.063 -52.725 102.266 1 66.97 ? C7N NAP 301 F 1 
HETATM 40 O O7N NAP . . . P 3 -0.915 -52.45 101.431 1 60.71 ? O7N NAP 301 F 1 
HETATM 41 N N7N NAP . . . P 3 0.18 -53.995 102.584 1 65.25 ? N7N NAP 301 F 1 
HETATM 42 C C4N NAP . . . P 3 1.184 -50.521 102.279 1 64.15 ? C4N NAP 301 F 1 
HETATM 43 C C5N NAP . . . P 3 2.201 -49.751 102.771 1 60.08 ? C5N NAP 301 F 1 
HETATM 44 C C6N NAP . . . P 3 2.952 -50.307 103.782 1 52.94 ? C6N NAP 301 F 1 
HETATM 45 P P2B NAP . . . P 3 -0.458 -56.493 116.61 1 78.72 ? P2B NAP 301 F 1 
HETATM 46 O O1X NAP . . . P 3 0.292 -56.573 117.944 1 60.9 ? O1X NAP 301 F 1 
HETATM 47 O O2X NAP . . . P 3 -1.859 -55.952 116.77 1 86.94 ? O2X NAP 301 F 1 
HETATM 48 O O3X NAP . . . P 3 -0.427 -57.786 115.756 1 75.63 ? O3X NAP 301 F 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           47 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           48 
#