data_8JFN # _model_server_result.job_id L0iDIH8h50O-5au8NctnDA _model_server_result.datetime_utc '2024-11-23 23:46:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jfn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 8JFN # _exptl.entry_id 8JFN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 428.438 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'THIOBUTYRIC ACID S-{2-[3-(2-HYDROXY-3,3-DIMETHYL-4-PHOSPHONOOXY-BUTYRYLAMINO)-PROPIONYLAMINO]-ETHYL} ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JFN _cell.length_a 77.272 _cell.length_b 101.816 _cell.length_c 126.329 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JFN _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -77.272 -101.816 0 3 'crystal symmetry operation' 3_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -77.272 0 0 4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -101.816 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 38 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 36 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id P24 _struct_conn.ptnr2_label_comp_id PSR _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id PSR _struct_conn.ptnr2_auth_seq_id 101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.607 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C15 H29 N2 O8 P S' _chem_comp.formula_weight 428.438 _chem_comp.id PSR _chem_comp.mon_nstd_flag . _chem_comp.name 'THIOBUTYRIC ACID S-{2-[3-(2-HYDROXY-3,3-DIMETHYL-4-PHOSPHONOOXY-BUTYRYLAMINO)-PROPIONYLAMINO]-ETHYL} ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 P24 PSR sing 352 n n O23 H231 PSR sing 353 n n P24 O25 PSR doub 354 n n P24 O26 PSR sing 355 n n P24 O27 PSR sing 356 n n O26 H261 PSR sing 357 n n O27 C28 PSR sing 358 n n C28 C29 PSR sing 359 n n C28 H281 PSR sing 360 n n C28 H282 PSR sing 361 n n C29 C30 PSR sing 362 n n C29 C31 PSR sing 363 n n C29 C32 PSR sing 364 n n C30 H301 PSR sing 365 n n C30 H302 PSR sing 366 n n C30 H303 PSR sing 367 n n C31 H311 PSR sing 368 n n C31 H312 PSR sing 369 n n C31 H313 PSR sing 370 n n C32 O33 PSR sing 371 n n C32 C34 PSR sing 372 n n C32 H321 PSR sing 373 n n O33 H331 PSR sing 374 n n C34 O35 PSR doub 375 n n C34 N36 PSR sing 376 n n N36 C37 PSR sing 377 n n N36 H361 PSR sing 378 n n C37 C38 PSR sing 379 n n C37 H371 PSR sing 380 n n C37 H372 PSR sing 381 n n C38 C39 PSR sing 382 n n C38 H381 PSR sing 383 n n C38 H382 PSR sing 384 n n C39 O40 PSR doub 385 n n C39 N41 PSR sing 386 n n N41 C42 PSR sing 387 n n N41 H411 PSR sing 388 n n C42 C43 PSR sing 389 n n C42 H421 PSR sing 390 n n C42 H422 PSR sing 391 n n C43 S1 PSR sing 392 n n C43 H431 PSR sing 393 n n C43 H432 PSR sing 394 n n S1 C1 PSR sing 395 n n C1 O1 PSR doub 396 n n C1 C2 PSR sing 397 n n C2 C3 PSR sing 398 n n C2 HC21 PSR sing 399 n n C2 HC22 PSR sing 400 n n C3 C4 PSR sing 401 n n C3 HC31 PSR sing 402 n n C3 HC32 PSR sing 403 n n C4 HC41 PSR sing 404 n n C4 HC42 PSR sing 405 n n C4 HC43 PSR sing 406 n n # _atom_sites.entry_id 8JFN _atom_sites.fract_transf_matrix[1][1] 0.012941 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009822 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007916 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAD A 1 301 301 NAD NAD . D 4 PSR B 1 101 36 PSR DRG . E 5 HOH A 1 401 53 HOH HOH . E 5 HOH A 2 402 46 HOH HOH . E 5 HOH A 3 403 81 HOH HOH . E 5 HOH A 4 404 59 HOH HOH . E 5 HOH A 5 405 17 HOH HOH . E 5 HOH A 6 406 91 HOH HOH . E 5 HOH A 7 407 2 HOH HOH . E 5 HOH A 8 408 61 HOH HOH . E 5 HOH A 9 409 60 HOH HOH . E 5 HOH A 10 410 7 HOH HOH . E 5 HOH A 11 411 30 HOH HOH . E 5 HOH A 12 412 35 HOH HOH . E 5 HOH A 13 413 42 HOH HOH . E 5 HOH A 14 414 15 HOH HOH . E 5 HOH A 15 415 12 HOH HOH . E 5 HOH A 16 416 51 HOH HOH . E 5 HOH A 17 417 49 HOH HOH . E 5 HOH A 18 418 72 HOH HOH . E 5 HOH A 19 419 33 HOH HOH . E 5 HOH A 20 420 54 HOH HOH . E 5 HOH A 21 421 43 HOH HOH . E 5 HOH A 22 422 25 HOH HOH . E 5 HOH A 23 423 9 HOH HOH . E 5 HOH A 24 424 66 HOH HOH . E 5 HOH A 25 425 4 HOH HOH . E 5 HOH A 26 426 101 HOH HOH . E 5 HOH A 27 427 29 HOH HOH . E 5 HOH A 28 428 8 HOH HOH . E 5 HOH A 29 429 3 HOH HOH . E 5 HOH A 30 430 27 HOH HOH . E 5 HOH A 31 431 11 HOH HOH . E 5 HOH A 32 432 26 HOH HOH . E 5 HOH A 33 433 18 HOH HOH . E 5 HOH A 34 434 14 HOH HOH . E 5 HOH A 35 435 28 HOH HOH . E 5 HOH A 36 436 89 HOH HOH . E 5 HOH A 37 437 21 HOH HOH . E 5 HOH A 38 438 31 HOH HOH . E 5 HOH A 39 439 44 HOH HOH . E 5 HOH A 40 440 57 HOH HOH . E 5 HOH A 41 441 68 HOH HOH . E 5 HOH A 42 442 10 HOH HOH . E 5 HOH A 43 443 16 HOH HOH . E 5 HOH A 44 444 5 HOH HOH . E 5 HOH A 45 445 103 HOH HOH . E 5 HOH A 46 446 37 HOH HOH . E 5 HOH A 47 447 56 HOH HOH . E 5 HOH A 48 448 6 HOH HOH . E 5 HOH A 49 449 13 HOH HOH . E 5 HOH A 50 450 47 HOH HOH . E 5 HOH A 51 451 50 HOH HOH . E 5 HOH A 52 452 23 HOH HOH . E 5 HOH A 53 453 67 HOH HOH . E 5 HOH A 54 454 39 HOH HOH . E 5 HOH A 55 455 75 HOH HOH . E 5 HOH A 56 456 77 HOH HOH . E 5 HOH A 57 457 34 HOH HOH . E 5 HOH A 58 458 48 HOH HOH . E 5 HOH A 59 459 80 HOH HOH . E 5 HOH A 60 460 40 HOH HOH . E 5 HOH A 61 461 65 HOH HOH . E 5 HOH A 62 462 58 HOH HOH . E 5 HOH A 63 463 22 HOH HOH . E 5 HOH A 64 464 52 HOH HOH . E 5 HOH A 65 465 73 HOH HOH . E 5 HOH A 66 466 69 HOH HOH . E 5 HOH A 67 467 63 HOH HOH . E 5 HOH A 68 468 45 HOH HOH . E 5 HOH A 69 469 19 HOH HOH . E 5 HOH A 70 470 74 HOH HOH . E 5 HOH A 71 471 88 HOH HOH . E 5 HOH A 72 472 41 HOH HOH . E 5 HOH A 73 473 32 HOH HOH . E 5 HOH A 74 474 86 HOH HOH . E 5 HOH A 75 475 85 HOH HOH . E 5 HOH A 76 476 84 HOH HOH . E 5 HOH A 77 477 97 HOH HOH . E 5 HOH A 78 478 96 HOH HOH . E 5 HOH A 79 479 79 HOH HOH . E 5 HOH A 80 480 70 HOH HOH . E 5 HOH A 81 481 76 HOH HOH . E 5 HOH A 82 482 87 HOH HOH . E 5 HOH A 83 483 99 HOH HOH . E 5 HOH A 84 484 98 HOH HOH . E 5 HOH A 85 485 38 HOH HOH . E 5 HOH A 86 486 104 HOH HOH . E 5 HOH A 87 487 94 HOH HOH . E 5 HOH A 88 488 71 HOH HOH . F 5 HOH B 1 201 36 HOH HOH . F 5 HOH B 2 202 55 HOH HOH . F 5 HOH B 3 203 20 HOH HOH . F 5 HOH B 4 204 105 HOH HOH . F 5 HOH B 5 205 24 HOH HOH . F 5 HOH B 6 206 64 HOH HOH . F 5 HOH B 7 207 83 HOH HOH . F 5 HOH B 8 208 62 HOH HOH . F 5 HOH B 9 209 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 PSR . . . D 4 -10.659 -36.554 -16.253 1 64.62 -1 O23 PSR 101 B 1 HETATM 2 P P24 PSR . . . D 4 -10.965 -37.798 -17.242 1 75.21 ? P24 PSR 101 B 1 HETATM 3 O O25 PSR . . . D 4 -10.334 -39.015 -16.666 1 70.56 ? O25 PSR 101 B 1 HETATM 4 O O27 PSR . . . D 4 -12.569 -37.852 -17.5 1 60.35 ? O27 PSR 101 B 1 HETATM 5 C C28 PSR . . . D 4 -13.529 -38.6 -16.731 1 56.32 ? C28 PSR 101 B 1 HETATM 6 C C29 PSR . . . D 4 -14.16 -37.75 -15.602 1 55.7 ? C29 PSR 101 B 1 HETATM 7 C C30 PSR . . . D 4 -15.024 -36.709 -16.333 1 53.84 ? C30 PSR 101 B 1 HETATM 8 C C31 PSR . . . D 4 -13.107 -37.015 -14.763 1 50.34 ? C31 PSR 101 B 1 HETATM 9 C C32 PSR . . . D 4 -15.023 -38.558 -14.608 1 54.14 ? C32 PSR 101 B 1 HETATM 10 O O33 PSR . . . D 4 -15.372 -37.781 -13.443 1 52.67 ? O33 PSR 101 B 1 HETATM 11 C C34 PSR . . . D 4 -14.416 -39.889 -14.135 1 55.97 ? C34 PSR 101 B 1 HETATM 12 O O35 PSR . . . D 4 -13.204 -40.095 -14.262 1 65.01 ? O35 PSR 101 B 1 HETATM 13 N N36 PSR . . . D 4 -15.277 -40.757 -13.577 1 54.25 ? N36 PSR 101 B 1 HETATM 14 C C37 PSR . . . D 4 -16.717 -40.498 -13.443 1 50.9 ? C37 PSR 101 B 1 HETATM 15 C C38 PSR . . . D 4 -17.486 -41.763 -13.822 1 47.38 ? C38 PSR 101 B 1 HETATM 16 C C39 PSR . . . D 4 -18.219 -42.099 -12.534 1 46.11 ? C39 PSR 101 B 1 HETATM 17 O O40 PSR . . . D 4 -17.578 -42.518 -11.562 1 44.18 ? O40 PSR 101 B 1 HETATM 18 N N41 PSR . . . D 4 -19.542 -41.856 -12.594 1 44.22 ? N41 PSR 101 B 1 HETATM 19 C C42 PSR . . . D 4 -20.456 -42.069 -11.463 1 46.93 ? C42 PSR 101 B 1 HETATM 20 C C43 PSR . . . D 4 -21.131 -40.734 -11.101 1 40.73 ? C43 PSR 101 B 1 HETATM 21 S S1 PSR . . . D 4 -22.736 -40.486 -11.949 1 62.23 ? S1 PSR 101 B 1 HETATM 22 C C1 PSR . . . D 4 -23.991 -41.307 -10.938 1 36.26 ? C1 PSR 101 B 1 HETATM 23 O O1 PSR . . . D 4 -23.844 -41.692 -9.81 1 32.43 ? O1 PSR 101 B 1 HETATM 24 C C2 PSR . . . D 4 -25.388 -41.554 -11.506 1 39.34 ? C2 PSR 101 B 1 HETATM 25 C C3 PSR . . . D 4 -25.605 -41.584 -13.036 1 34.63 ? C3 PSR 101 B 1 HETATM 26 C C4 PSR . . . D 4 -26.924 -42.183 -13.516 1 35.33 ? C4 PSR 101 B 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #