data_8JFN # _model_server_result.job_id p3DVgSr42skal8Fqj818vQ _model_server_result.datetime_utc '2024-11-05 21:28:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jfn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 8JFN # _exptl.entry_id 8JFN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JFN _cell.length_a 77.272 _cell.length_b 101.816 _cell.length_c 126.329 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JFN _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -77.272 -101.816 0 3 'crystal symmetry operation' 3_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -77.272 0 0 4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -101.816 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 38 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 36 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id P24 _struct_conn.ptnr2_label_comp_id PSR _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id PSR _struct_conn.ptnr2_auth_seq_id 101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.607 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 8JFN _atom_sites.fract_transf_matrix[1][1] 0.012941 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009822 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007916 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAD A 1 301 301 NAD NAD . D 4 PSR B 1 101 36 PSR DRG . E 5 HOH A 1 401 53 HOH HOH . E 5 HOH A 2 402 46 HOH HOH . E 5 HOH A 3 403 81 HOH HOH . E 5 HOH A 4 404 59 HOH HOH . E 5 HOH A 5 405 17 HOH HOH . E 5 HOH A 6 406 91 HOH HOH . E 5 HOH A 7 407 2 HOH HOH . E 5 HOH A 8 408 61 HOH HOH . E 5 HOH A 9 409 60 HOH HOH . E 5 HOH A 10 410 7 HOH HOH . E 5 HOH A 11 411 30 HOH HOH . E 5 HOH A 12 412 35 HOH HOH . E 5 HOH A 13 413 42 HOH HOH . E 5 HOH A 14 414 15 HOH HOH . E 5 HOH A 15 415 12 HOH HOH . E 5 HOH A 16 416 51 HOH HOH . E 5 HOH A 17 417 49 HOH HOH . E 5 HOH A 18 418 72 HOH HOH . E 5 HOH A 19 419 33 HOH HOH . E 5 HOH A 20 420 54 HOH HOH . E 5 HOH A 21 421 43 HOH HOH . E 5 HOH A 22 422 25 HOH HOH . E 5 HOH A 23 423 9 HOH HOH . E 5 HOH A 24 424 66 HOH HOH . E 5 HOH A 25 425 4 HOH HOH . E 5 HOH A 26 426 101 HOH HOH . E 5 HOH A 27 427 29 HOH HOH . E 5 HOH A 28 428 8 HOH HOH . E 5 HOH A 29 429 3 HOH HOH . E 5 HOH A 30 430 27 HOH HOH . E 5 HOH A 31 431 11 HOH HOH . E 5 HOH A 32 432 26 HOH HOH . E 5 HOH A 33 433 18 HOH HOH . E 5 HOH A 34 434 14 HOH HOH . E 5 HOH A 35 435 28 HOH HOH . E 5 HOH A 36 436 89 HOH HOH . E 5 HOH A 37 437 21 HOH HOH . E 5 HOH A 38 438 31 HOH HOH . E 5 HOH A 39 439 44 HOH HOH . E 5 HOH A 40 440 57 HOH HOH . E 5 HOH A 41 441 68 HOH HOH . E 5 HOH A 42 442 10 HOH HOH . E 5 HOH A 43 443 16 HOH HOH . E 5 HOH A 44 444 5 HOH HOH . E 5 HOH A 45 445 103 HOH HOH . E 5 HOH A 46 446 37 HOH HOH . E 5 HOH A 47 447 56 HOH HOH . E 5 HOH A 48 448 6 HOH HOH . E 5 HOH A 49 449 13 HOH HOH . E 5 HOH A 50 450 47 HOH HOH . E 5 HOH A 51 451 50 HOH HOH . E 5 HOH A 52 452 23 HOH HOH . E 5 HOH A 53 453 67 HOH HOH . E 5 HOH A 54 454 39 HOH HOH . E 5 HOH A 55 455 75 HOH HOH . E 5 HOH A 56 456 77 HOH HOH . E 5 HOH A 57 457 34 HOH HOH . E 5 HOH A 58 458 48 HOH HOH . E 5 HOH A 59 459 80 HOH HOH . E 5 HOH A 60 460 40 HOH HOH . E 5 HOH A 61 461 65 HOH HOH . E 5 HOH A 62 462 58 HOH HOH . E 5 HOH A 63 463 22 HOH HOH . E 5 HOH A 64 464 52 HOH HOH . E 5 HOH A 65 465 73 HOH HOH . E 5 HOH A 66 466 69 HOH HOH . E 5 HOH A 67 467 63 HOH HOH . E 5 HOH A 68 468 45 HOH HOH . E 5 HOH A 69 469 19 HOH HOH . E 5 HOH A 70 470 74 HOH HOH . E 5 HOH A 71 471 88 HOH HOH . E 5 HOH A 72 472 41 HOH HOH . E 5 HOH A 73 473 32 HOH HOH . E 5 HOH A 74 474 86 HOH HOH . E 5 HOH A 75 475 85 HOH HOH . E 5 HOH A 76 476 84 HOH HOH . E 5 HOH A 77 477 97 HOH HOH . E 5 HOH A 78 478 96 HOH HOH . E 5 HOH A 79 479 79 HOH HOH . E 5 HOH A 80 480 70 HOH HOH . E 5 HOH A 81 481 76 HOH HOH . E 5 HOH A 82 482 87 HOH HOH . E 5 HOH A 83 483 99 HOH HOH . E 5 HOH A 84 484 98 HOH HOH . E 5 HOH A 85 485 38 HOH HOH . E 5 HOH A 86 486 104 HOH HOH . E 5 HOH A 87 487 94 HOH HOH . E 5 HOH A 88 488 71 HOH HOH . F 5 HOH B 1 201 36 HOH HOH . F 5 HOH B 2 202 55 HOH HOH . F 5 HOH B 3 203 20 HOH HOH . F 5 HOH B 4 204 105 HOH HOH . F 5 HOH B 5 205 24 HOH HOH . F 5 HOH B 6 206 64 HOH HOH . F 5 HOH B 7 207 83 HOH HOH . F 5 HOH B 8 208 62 HOH HOH . F 5 HOH B 9 209 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 3 -19.602 -34.079 -11.529 1 33.48 ? PA NAD 301 A 1 HETATM 2 O O1A NAD . . . C 3 -18.435 -34.569 -12.313 1 34.01 ? O1A NAD 301 A 1 HETATM 3 O O2A NAD . . . C 3 -20.185 -32.752 -11.836 1 33.28 ? O2A NAD 301 A 1 HETATM 4 O O5B NAD . . . C 3 -19.25 -34.096 -9.996 1 34.96 ? O5B NAD 301 A 1 HETATM 5 C C5B NAD . . . C 3 -18.335 -35.088 -9.519 1 35.26 ? C5B NAD 301 A 1 HETATM 6 C C4B NAD . . . C 3 -17.454 -34.406 -8.494 1 36.64 ? C4B NAD 301 A 1 HETATM 7 O O4B NAD . . . C 3 -16.739 -35.454 -7.789 1 36.91 ? O4B NAD 301 A 1 HETATM 8 C C3B NAD . . . C 3 -16.398 -33.612 -9.246 1 33.21 ? C3B NAD 301 A 1 HETATM 9 O O3B NAD . . . C 3 -16.192 -32.412 -8.558 1 29.77 ? O3B NAD 301 A 1 HETATM 10 C C2B NAD . . . C 3 -15.226 -34.52 -9.04 1 33.44 ? C2B NAD 301 A 1 HETATM 11 O O2B NAD . . . C 3 -13.996 -33.804 -9.205 1 34.01 ? O2B NAD 301 A 1 HETATM 12 C C1B NAD . . . C 3 -15.454 -34.904 -7.602 1 33.47 ? C1B NAD 301 A 1 HETATM 13 N N9A NAD . . . C 3 -14.455 -35.929 -7.198 1 33.94 ? N9A NAD 301 A 1 HETATM 14 C C8A NAD . . . C 3 -14.185 -37.095 -7.79 1 30.55 ? C8A NAD 301 A 1 HETATM 15 N N7A NAD . . . C 3 -13.2 -37.687 -7.094 1 34.2 ? N7A NAD 301 A 1 HETATM 16 C C5A NAD . . . C 3 -12.858 -36.884 -6.067 1 32.87 ? C5A NAD 301 A 1 HETATM 17 C C6A NAD . . . C 3 -11.945 -36.988 -5.08 1 34.58 ? C6A NAD 301 A 1 HETATM 18 N N6A NAD . . . C 3 -11.192 -38.091 -5.055 1 32.73 ? N6A NAD 301 A 1 HETATM 19 N N1A NAD . . . C 3 -11.79 -36.041 -4.134 1 33.61 ? N1A NAD 301 A 1 HETATM 20 C C2A NAD . . . C 3 -12.596 -34.908 -4.191 1 34.13 ? C2A NAD 301 A 1 HETATM 21 N N3A NAD . . . C 3 -13.535 -34.817 -5.226 1 34.15 ? N3A NAD 301 A 1 HETATM 22 C C4A NAD . . . C 3 -13.644 -35.8 -6.138 1 34.29 ? C4A NAD 301 A 1 HETATM 23 O O3 NAD . . . C 3 -20.708 -35.245 -11.602 1 32.59 ? O3 NAD 301 A 1 HETATM 24 P PN NAD . . . C 3 -22.129 -35.201 -10.872 1 31.43 ? PN NAD 301 A 1 HETATM 25 O O1N NAD . . . C 3 -23.031 -35.967 -11.765 1 33.34 ? O1N NAD 301 A 1 HETATM 26 O O2N NAD . . . C 3 -22.515 -33.823 -10.463 1 30.77 ? O2N NAD 301 A 1 HETATM 27 O O5D NAD . . . C 3 -21.813 -36.105 -9.565 1 32.29 ? O5D NAD 301 A 1 HETATM 28 C C5D NAD . . . C 3 -22.027 -35.611 -8.236 1 28.71 ? C5D NAD 301 A 1 HETATM 29 C C4D NAD . . . C 3 -22.718 -36.675 -7.354 1 32.48 ? C4D NAD 301 A 1 HETATM 30 O O4D NAD . . . C 3 -24.036 -36.892 -7.912 1 33.21 ? O4D NAD 301 A 1 HETATM 31 C C3D NAD . . . C 3 -22.061 -38.073 -7.373 1 30.45 ? C3D NAD 301 A 1 HETATM 32 O O3D NAD . . . C 3 -22.363 -38.729 -6.144 1 31.3 ? O3D NAD 301 A 1 HETATM 33 C C2D NAD . . . C 3 -22.853 -38.747 -8.443 1 26.56 ? C2D NAD 301 A 1 HETATM 34 O O2D NAD . . . C 3 -22.72 -40.148 -8.262 1 25.49 ? O2D NAD 301 A 1 HETATM 35 C C1D NAD . . . C 3 -24.225 -38.298 -8.035 1 30.41 ? C1D NAD 301 A 1 HETATM 36 N N1N NAD . . . C 3 -25.319 -38.508 -9.059 1 34.19 ? N1N NAD 301 A 1 HETATM 37 C C2N NAD . . . C 3 -25.163 -38.134 -10.411 1 30.2 ? C2N NAD 301 A 1 HETATM 38 C C3N NAD . . . C 3 -26.204 -38.337 -11.328 1 33.68 ? C3N NAD 301 A 1 HETATM 39 C C7N NAD . . . C 3 -26.081 -37.987 -12.696 1 35.86 ? C7N NAD 301 A 1 HETATM 40 O O7N NAD . . . C 3 -25.303 -37.103 -13.075 1 33.64 ? O7N NAD 301 A 1 HETATM 41 N N7N NAD . . . C 3 -26.882 -38.656 -13.54 1 30.09 ? N7N NAD 301 A 1 HETATM 42 C C4N NAD . . . C 3 -27.4 -38.896 -10.874 1 32.25 ? C4N NAD 301 A 1 HETATM 43 C C5N NAD . . . C 3 -27.583 -39.259 -9.54 1 32.51 ? C5N NAD 301 A 1 HETATM 44 C C6N NAD . . . C 3 -26.55 -39.059 -8.636 1 29.14 ? C6N NAD 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #