data_8JGJ # _model_server_result.job_id -uAHJwRXuOOgPqydFsTcbg _model_server_result.datetime_utc '2024-11-17 22:48:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jgj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":901}' # _entry.id 8JGJ # _exptl.entry_id 8JGJ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JGJ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JGJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 161 A CYS 161 1_555 A SG CYS 172 A CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 463 A CYS 463 1_555 A SG CYS 472 A CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 562 A CYS 562 1_555 A SG CYS 568 A CYS 568 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 161 B CYS 161 1_555 B SG CYS 172 B CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 B SG CYS 463 B CYS 463 1_555 B SG CYS 472 B CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 B SG CYS 562 B CYS 562 1_555 B SG CYS 568 B CYS 568 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8JGJ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 901 901 ATP ATP . D 3 CL A 1 902 902 CL CL . E 3 CL A 1 903 3 CL CL . F 3 CL A 1 904 5 CL CL . G 2 ATP B 1 901 901 ATP ATP . H 3 CL B 1 902 902 CL CL . I 3 CL B 1 903 4 CL CL . J 3 CL B 1 904 6 CL CL . K 4 HOH A 1 1001 3 HOH HOH . K 4 HOH A 2 1002 6 HOH HOH . L 4 HOH B 1 1001 1 HOH HOH . L 4 HOH B 2 1002 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 2 114.698 96.999 93.962 1 47.98 ? PG ATP 901 A 1 HETATM 2 O O1G ATP . . . C 2 115.516 96.029 93.18 1 47.98 ? O1G ATP 901 A 1 HETATM 3 O O2G ATP . . . C 2 113.19 96.852 93.737 1 47.98 ? O2G ATP 901 A 1 HETATM 4 O O3G ATP . . . C 2 114.984 96.975 95.464 1 47.98 ? O3G ATP 901 A 1 HETATM 5 P PB ATP . . . C 2 114.345 99.704 92.741 1 47.98 ? PB ATP 901 A 1 HETATM 6 O O1B ATP . . . C 2 114.38 100.959 93.518 1 47.98 ? O1B ATP 901 A 1 HETATM 7 O O2B ATP . . . C 2 112.954 99.239 92.315 1 47.98 ? O2B ATP 901 A 1 HETATM 8 O O3B ATP . . . C 2 115.023 98.496 93.516 1 47.98 ? O3B ATP 901 A 1 HETATM 9 P PA ATP . . . C 2 114.994 99.651 89.863 1 47.98 ? PA ATP 901 A 1 HETATM 10 O O1A ATP . . . C 2 114.143 100.746 89.358 1 47.98 ? O1A ATP 901 A 1 HETATM 11 O O2A ATP . . . C 2 114.444 98.249 89.616 1 47.98 ? O2A ATP 901 A 1 HETATM 12 O O3A ATP . . . C 2 115.233 99.783 91.423 1 47.98 ? O3A ATP 901 A 1 HETATM 13 O O5' ATP . . . C 2 116.455 99.716 89.267 1 47.98 ? O5' ATP 901 A 1 HETATM 14 C C5' ATP . . . C 2 117.366 98.605 89.401 1 47.98 ? C5' ATP 901 A 1 HETATM 15 C C4' ATP . . . C 2 118.548 98.803 88.489 1 47.98 ? C4' ATP 901 A 1 HETATM 16 O O4' ATP . . . C 2 118.026 99.25 87.218 1 47.98 ? O4' ATP 901 A 1 HETATM 17 C C3' ATP . . . C 2 119.423 99.957 88.968 1 47.98 ? C3' ATP 901 A 1 HETATM 18 O O3' ATP . . . C 2 120.667 99.8 88.299 1 47.98 ? O3' ATP 901 A 1 HETATM 19 C C2' ATP . . . C 2 118.75 101.162 88.319 1 47.98 ? C2' ATP 901 A 1 HETATM 20 O O2' ATP . . . C 2 119.788 102.099 88.075 1 47.98 ? O2' ATP 901 A 1 HETATM 21 C C1' ATP . . . C 2 118.441 100.574 86.948 1 47.98 ? C1' ATP 901 A 1 HETATM 22 N N9 ATP . . . C 2 117.314 101.237 86.303 1 47.98 ? N9 ATP 901 A 1 HETATM 23 C C8 ATP . . . C 2 116.235 101.832 86.903 1 47.98 ? C8 ATP 901 A 1 HETATM 24 N N7 ATP . . . C 2 115.368 102.343 86.063 1 47.98 ? N7 ATP 901 A 1 HETATM 25 C C5 ATP . . . C 2 115.911 102.058 84.82 1 47.98 ? C5 ATP 901 A 1 HETATM 26 C C6 ATP . . . C 2 115.477 102.332 83.509 1 47.98 ? C6 ATP 901 A 1 HETATM 27 N N6 ATP . . . C 2 114.345 102.982 83.22 1 47.98 ? N6 ATP 901 A 1 HETATM 28 N N1 ATP . . . C 2 116.255 101.91 82.489 1 47.98 ? N1 ATP 901 A 1 HETATM 29 C C2 ATP . . . C 2 117.387 101.259 82.77 1 47.98 ? C2 ATP 901 A 1 HETATM 30 N N3 ATP . . . C 2 117.897 100.946 83.963 1 47.98 ? N3 ATP 901 A 1 HETATM 31 C C4 ATP . . . C 2 117.108 101.375 84.952 1 47.98 ? C4 ATP 901 A 1 HETATM 32 H "H5'1" ATP . . . C 2 116.91 97.784 89.16 1 47.98 ? "H5'1" ATP 901 A 1 HETATM 33 H "H5'2" ATP . . . C 2 117.673 98.548 90.319 1 47.98 ? "H5'2" ATP 901 A 1 HETATM 34 H H4' ATP . . . C 2 119.061 97.984 88.405 1 47.98 ? H4' ATP 901 A 1 HETATM 35 H H3' ATP . . . C 2 119.505 100.02 89.933 1 47.98 ? H3' ATP 901 A 1 HETATM 36 H HO3' ATP . . . C 2 120.889 100.568 88.011 1 47.98 ? HO3' ATP 901 A 1 HETATM 37 H H2' ATP . . . C 2 117.996 101.519 88.812 1 47.98 ? H2' ATP 901 A 1 HETATM 38 H HO2' ATP . . . C 2 119.528 102.592 87.433 1 47.98 ? HO2' ATP 901 A 1 HETATM 39 H H1' ATP . . . C 2 119.224 100.598 86.377 1 47.98 ? H1' ATP 901 A 1 HETATM 40 H H8 ATP . . . C 2 116.13 101.875 87.826 1 47.98 ? H8 ATP 901 A 1 HETATM 41 H HN61 ATP . . . C 2 114.106 103.087 82.4 1 47.98 ? HN61 ATP 901 A 1 HETATM 42 H HN62 ATP . . . C 2 113.856 103.296 83.853 1 47.98 ? HN62 ATP 901 A 1 HETATM 43 H H2 ATP . . . C 2 117.888 100.989 82.035 1 47.98 ? H2 ATP 901 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 398 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 43 #