data_8JGQ # _model_server_result.job_id 7VUS2gRc_twGBWRemy32Tg _model_server_result.datetime_utc '2024-10-11 03:13:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jgq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 8JGQ # _exptl.entry_id 8JGQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 417.915 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'bis[oxidanyl(phosphonooxy)phosphoryl] hydrogen phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8JGQ _cell.length_a 166.71 _cell.length_b 166.71 _cell.length_c 39.3 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JGQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 398 A GLU 378 1_555 I MG MG . A MG 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc2 A OD1 ASP 473 A ASP 453 1_555 I MG MG . A MG 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.776 ? metalc ? metalc3 A OD2 ASP 473 A ASP 453 1_555 I MG MG . A MG 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? # _chem_comp.formula 'H7 O16 P5' _chem_comp.formula_weight 417.915 _chem_comp.id UG3 _chem_comp.mon_nstd_flag . _chem_comp.name 'bis[oxidanyl(phosphonooxy)phosphoryl] hydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O20 P18 UG3 doub 362 n n O19 P18 UG3 sing 363 n n P18 O21 UG3 sing 364 n n P18 O17 UG3 sing 365 n n O17 P14 UG3 sing 366 n n P14 O15 UG3 doub 367 n n P14 O16 UG3 sing 368 n n P14 O13 UG3 sing 369 n n O12 P10 UG3 doub 370 n n O13 P10 UG3 sing 371 n n P10 O09 UG3 sing 372 n n P10 O11 UG3 sing 373 n n O09 P06 UG3 sing 374 n n O07 P06 UG3 doub 375 n n P06 O08 UG3 sing 376 n n P06 O05 UG3 sing 377 n n O01 P02 UG3 doub 378 n n O05 P02 UG3 sing 379 n n O03 P02 UG3 sing 380 n n P02 O04 UG3 sing 381 n n O03 H1 UG3 sing 382 n n O04 H2 UG3 sing 383 n n O08 H3 UG3 sing 384 n n O11 H4 UG3 sing 385 n n O16 H5 UG3 sing 386 n n O19 H6 UG3 sing 387 n n O21 H7 UG3 sing 388 n n # _atom_sites.entry_id 8JGQ _atom_sites.fract_transf_matrix[1][1] 0.005998 _atom_sites.fract_transf_matrix[1][2] 0.003463 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006926 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025445 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UG3 A 1 601 601 UG3 LIG . C 3 SO4 A 1 602 5 SO4 SO4 . D 3 SO4 A 1 603 6 SO4 SO4 . E 3 SO4 A 1 604 7 SO4 SO4 . F 3 SO4 A 1 605 8 SO4 SO4 . G 3 SO4 A 1 606 9 SO4 SO4 . H 3 SO4 A 1 607 10 SO4 SO4 . I 4 MG A 1 608 1 MG MG . J 5 HOH A 1 701 15 HOH HOH . J 5 HOH A 2 702 8 HOH HOH . J 5 HOH A 3 703 32 HOH HOH . J 5 HOH A 4 704 27 HOH HOH . J 5 HOH A 5 705 5 HOH HOH . J 5 HOH A 6 706 16 HOH HOH . J 5 HOH A 7 707 28 HOH HOH . J 5 HOH A 8 708 2 HOH HOH . J 5 HOH A 9 709 21 HOH HOH . J 5 HOH A 10 710 4 HOH HOH . J 5 HOH A 11 711 11 HOH HOH . J 5 HOH A 12 712 22 HOH HOH . J 5 HOH A 13 713 29 HOH HOH . J 5 HOH A 14 714 1 HOH HOH . J 5 HOH A 15 715 30 HOH HOH . J 5 HOH A 16 716 6 HOH HOH . J 5 HOH A 17 717 26 HOH HOH . J 5 HOH A 18 718 9 HOH HOH . J 5 HOH A 19 719 18 HOH HOH . J 5 HOH A 20 720 20 HOH HOH . J 5 HOH A 21 721 19 HOH HOH . J 5 HOH A 22 722 12 HOH HOH . J 5 HOH A 23 723 25 HOH HOH . J 5 HOH A 24 724 7 HOH HOH . J 5 HOH A 25 725 3 HOH HOH . J 5 HOH A 26 726 14 HOH HOH . J 5 HOH A 27 727 17 HOH HOH . J 5 HOH A 28 728 10 HOH HOH . J 5 HOH A 29 729 24 HOH HOH . J 5 HOH A 30 730 23 HOH HOH . J 5 HOH A 31 731 13 HOH HOH . J 5 HOH A 32 732 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 UG3 . . . B 2 32.591 -62.928 1.421 1 43.14 -1 O01 UG3 601 A 1 HETATM 2 O O03 UG3 . . . B 2 31.585 -65.029 2.236 1 40.52 ? O03 UG3 601 A 1 HETATM 3 O O04 UG3 . . . B 2 31.669 -63.023 3.722 1 38.7 -1 O04 UG3 601 A 1 HETATM 4 O O05 UG3 . . . B 2 29.97 -63.011 1.685 1 62.6 ? O05 UG3 601 A 1 HETATM 5 O O07 UG3 . . . B 2 30.114 -60.881 0.417 1 58.67 ? O07 UG3 601 A 1 HETATM 6 O O08 UG3 . . . B 2 27.818 -62.022 0.95 1 60.21 -1 O08 UG3 601 A 1 HETATM 7 O O09 UG3 . . . B 2 29.189 -62.727 -1.049 1 80.07 ? O09 UG3 601 A 1 HETATM 8 O O11 UG3 . . . B 2 31.192 -64.249 -1.026 1 47.67 ? O11 UG3 601 A 1 HETATM 9 O O12 UG3 . . . B 2 30.402 -63.028 -3.202 1 64.2 -1 O12 UG3 601 A 1 HETATM 10 O O13 UG3 . . . B 2 29.428 -65.206 -2.496 1 72.56 ? O13 UG3 601 A 1 HETATM 11 O O15 UG3 . . . B 2 27.208 -64.305 -3.289 1 62.48 ? O15 UG3 601 A 1 HETATM 12 O O16 UG3 . . . B 2 27.504 -66.826 -2.615 1 54.02 -1 O16 UG3 601 A 1 HETATM 13 O O17 UG3 . . . B 2 28.072 -65.999 -4.873 1 65.43 ? O17 UG3 601 A 1 HETATM 14 O O19 UG3 . . . B 2 26.645 -66.134 -7.126 1 72.16 ? O19 UG3 601 A 1 HETATM 15 O O20 UG3 . . . B 2 29.078 -65.565 -7.289 1 90.15 -1 O20 UG3 601 A 1 HETATM 16 O O21 UG3 . . . B 2 27.46 -63.911 -6.378 1 72.26 -1 O21 UG3 601 A 1 HETATM 17 P P02 UG3 . . . B 2 31.504 -63.517 2.298 1 37.96 ? P02 UG3 601 A 1 HETATM 18 P P06 UG3 . . . B 2 29.252 -62.113 0.518 1 86.35 ? P06 UG3 601 A 1 HETATM 19 P P10 UG3 . . . B 2 30.11 -63.791 -1.949 1 62.07 ? P10 UG3 601 A 1 HETATM 20 P P14 UG3 . . . B 2 28.005 -65.578 -3.298 1 86.41 ? P14 UG3 601 A 1 HETATM 21 P P18 UG3 . . . B 2 27.801 -65.391 -6.477 1 81.18 ? P18 UG3 601 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 21 #