data_8JGU # _model_server_result.job_id qyw2Yb-Q8CygquXKWZYZlA _model_server_result.datetime_utc '2024-12-22 01:44:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jgu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8JGU # _exptl.entry_id 8JGU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8JGU _cell.length_a 101.41 _cell.length_b 101.41 _cell.length_c 49.26 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JGU _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 156 A ASP 136 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc2 A OD2 ASP 156 A ASP 136 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.074 ? metalc ? metalc3 A O SER 161 A SER 141 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.106 ? metalc ? metalc4 A OE1 GLU 163 A GLU 143 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc5 B NA NA . A NA 401 1_555 C O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.143 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8JGU _atom_sites.fract_transf_matrix[1][1] 0.009861 _atom_sites.fract_transf_matrix[1][2] 0.005693 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011386 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0203 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 401 1 NA NA . C 3 HOH A 1 501 106 HOH HOH . C 3 HOH A 2 502 19 HOH HOH . C 3 HOH A 3 503 95 HOH HOH . C 3 HOH A 4 504 158 HOH HOH . C 3 HOH A 5 505 100 HOH HOH . C 3 HOH A 6 506 2 HOH HOH . C 3 HOH A 7 507 159 HOH HOH . C 3 HOH A 8 508 73 HOH HOH . C 3 HOH A 9 509 38 HOH HOH . C 3 HOH A 10 510 124 HOH HOH . C 3 HOH A 11 511 135 HOH HOH . C 3 HOH A 12 512 163 HOH HOH . C 3 HOH A 13 513 31 HOH HOH . C 3 HOH A 14 514 46 HOH HOH . C 3 HOH A 15 515 57 HOH HOH . C 3 HOH A 16 516 11 HOH HOH . C 3 HOH A 17 517 50 HOH HOH . C 3 HOH A 18 518 36 HOH HOH . C 3 HOH A 19 519 137 HOH HOH . C 3 HOH A 20 520 85 HOH HOH . C 3 HOH A 21 521 88 HOH HOH . C 3 HOH A 22 522 8 HOH HOH . C 3 HOH A 23 523 16 HOH HOH . C 3 HOH A 24 524 47 HOH HOH . C 3 HOH A 25 525 41 HOH HOH . C 3 HOH A 26 526 92 HOH HOH . C 3 HOH A 27 527 1 HOH HOH . C 3 HOH A 28 528 28 HOH HOH . C 3 HOH A 29 529 74 HOH HOH . C 3 HOH A 30 530 108 HOH HOH . C 3 HOH A 31 531 13 HOH HOH . C 3 HOH A 32 532 166 HOH HOH . C 3 HOH A 33 533 136 HOH HOH . C 3 HOH A 34 534 37 HOH HOH . C 3 HOH A 35 535 117 HOH HOH . C 3 HOH A 36 536 162 HOH HOH . C 3 HOH A 37 537 167 HOH HOH . C 3 HOH A 38 538 161 HOH HOH . C 3 HOH A 39 539 4 HOH HOH . C 3 HOH A 40 540 110 HOH HOH . C 3 HOH A 41 541 78 HOH HOH . C 3 HOH A 42 542 54 HOH HOH . C 3 HOH A 43 543 9 HOH HOH . C 3 HOH A 44 544 12 HOH HOH . C 3 HOH A 45 545 107 HOH HOH . C 3 HOH A 46 546 17 HOH HOH . C 3 HOH A 47 547 23 HOH HOH . C 3 HOH A 48 548 96 HOH HOH . C 3 HOH A 49 549 63 HOH HOH . C 3 HOH A 50 550 10 HOH HOH . C 3 HOH A 51 551 55 HOH HOH . C 3 HOH A 52 552 90 HOH HOH . C 3 HOH A 53 553 60 HOH HOH . C 3 HOH A 54 554 148 HOH HOH . C 3 HOH A 55 555 42 HOH HOH . C 3 HOH A 56 556 97 HOH HOH . C 3 HOH A 57 557 21 HOH HOH . C 3 HOH A 58 558 81 HOH HOH . C 3 HOH A 59 559 61 HOH HOH . C 3 HOH A 60 560 77 HOH HOH . C 3 HOH A 61 561 128 HOH HOH . C 3 HOH A 62 562 86 HOH HOH . C 3 HOH A 63 563 7 HOH HOH . C 3 HOH A 64 564 143 HOH HOH . C 3 HOH A 65 565 26 HOH HOH . C 3 HOH A 66 566 72 HOH HOH . C 3 HOH A 67 567 32 HOH HOH . C 3 HOH A 68 568 29 HOH HOH . C 3 HOH A 69 569 131 HOH HOH . C 3 HOH A 70 570 18 HOH HOH . C 3 HOH A 71 571 24 HOH HOH . C 3 HOH A 72 572 94 HOH HOH . C 3 HOH A 73 573 15 HOH HOH . C 3 HOH A 74 574 171 HOH HOH . C 3 HOH A 75 575 147 HOH HOH . C 3 HOH A 76 576 35 HOH HOH . C 3 HOH A 77 577 105 HOH HOH . C 3 HOH A 78 578 138 HOH HOH . C 3 HOH A 79 579 111 HOH HOH . C 3 HOH A 80 580 22 HOH HOH . C 3 HOH A 81 581 84 HOH HOH . C 3 HOH A 82 582 40 HOH HOH . C 3 HOH A 83 583 43 HOH HOH . C 3 HOH A 84 584 141 HOH HOH . C 3 HOH A 85 585 58 HOH HOH . C 3 HOH A 86 586 52 HOH HOH . C 3 HOH A 87 587 66 HOH HOH . C 3 HOH A 88 588 83 HOH HOH . C 3 HOH A 89 589 76 HOH HOH . C 3 HOH A 90 590 14 HOH HOH . C 3 HOH A 91 591 116 HOH HOH . C 3 HOH A 92 592 25 HOH HOH . C 3 HOH A 93 593 5 HOH HOH . C 3 HOH A 94 594 170 HOH HOH . C 3 HOH A 95 595 146 HOH HOH . C 3 HOH A 96 596 133 HOH HOH . C 3 HOH A 97 597 39 HOH HOH . C 3 HOH A 98 598 152 HOH HOH . C 3 HOH A 99 599 70 HOH HOH . C 3 HOH A 100 600 125 HOH HOH . C 3 HOH A 101 601 155 HOH HOH . C 3 HOH A 102 602 123 HOH HOH . C 3 HOH A 103 603 48 HOH HOH . C 3 HOH A 104 604 98 HOH HOH . C 3 HOH A 105 605 59 HOH HOH . C 3 HOH A 106 606 20 HOH HOH . C 3 HOH A 107 607 91 HOH HOH . C 3 HOH A 108 608 172 HOH HOH . C 3 HOH A 109 609 93 HOH HOH . C 3 HOH A 110 610 34 HOH HOH . C 3 HOH A 111 611 67 HOH HOH . C 3 HOH A 112 612 75 HOH HOH . C 3 HOH A 113 613 139 HOH HOH . C 3 HOH A 114 614 121 HOH HOH . C 3 HOH A 115 615 3 HOH HOH . C 3 HOH A 116 616 6 HOH HOH . C 3 HOH A 117 617 156 HOH HOH . C 3 HOH A 118 618 154 HOH HOH . C 3 HOH A 119 619 68 HOH HOH . C 3 HOH A 120 620 45 HOH HOH . C 3 HOH A 121 621 101 HOH HOH . C 3 HOH A 122 622 82 HOH HOH . C 3 HOH A 123 623 69 HOH HOH . C 3 HOH A 124 624 65 HOH HOH . C 3 HOH A 125 625 49 HOH HOH . C 3 HOH A 126 626 80 HOH HOH . C 3 HOH A 127 627 87 HOH HOH . C 3 HOH A 128 628 113 HOH HOH . C 3 HOH A 129 629 33 HOH HOH . C 3 HOH A 130 630 151 HOH HOH . C 3 HOH A 131 631 30 HOH HOH . C 3 HOH A 132 632 153 HOH HOH . C 3 HOH A 133 633 53 HOH HOH . C 3 HOH A 134 634 149 HOH HOH . C 3 HOH A 135 635 132 HOH HOH . C 3 HOH A 136 636 104 HOH HOH . C 3 HOH A 137 637 71 HOH HOH . C 3 HOH A 138 638 120 HOH HOH . C 3 HOH A 139 639 127 HOH HOH . C 3 HOH A 140 640 51 HOH HOH . C 3 HOH A 141 641 44 HOH HOH . C 3 HOH A 142 642 126 HOH HOH . C 3 HOH A 143 643 160 HOH HOH . C 3 HOH A 144 644 165 HOH HOH . C 3 HOH A 145 645 27 HOH HOH . C 3 HOH A 146 646 122 HOH HOH . C 3 HOH A 147 647 142 HOH HOH . C 3 HOH A 148 648 64 HOH HOH . C 3 HOH A 149 649 79 HOH HOH . C 3 HOH A 150 650 130 HOH HOH . C 3 HOH A 151 651 115 HOH HOH . C 3 HOH A 152 652 150 HOH HOH . C 3 HOH A 153 653 99 HOH HOH . C 3 HOH A 154 654 112 HOH HOH . C 3 HOH A 155 655 164 HOH HOH . C 3 HOH A 156 656 145 HOH HOH . C 3 HOH A 157 657 144 HOH HOH . C 3 HOH A 158 658 140 HOH HOH . C 3 HOH A 159 659 109 HOH HOH . C 3 HOH A 160 660 102 HOH HOH . C 3 HOH A 161 661 118 HOH HOH . C 3 HOH A 162 662 168 HOH HOH . C 3 HOH A 163 663 157 HOH HOH . C 3 HOH A 164 664 103 HOH HOH . C 3 HOH A 165 665 129 HOH HOH . C 3 HOH A 166 666 134 HOH HOH . C 3 HOH A 167 667 89 HOH HOH . C 3 HOH A 168 668 119 HOH HOH . C 3 HOH A 169 669 114 HOH HOH . C 3 HOH A 170 670 169 HOH HOH . C 3 HOH A 171 671 56 HOH HOH . C 3 HOH A 172 672 62 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -8.759 _atom_site.Cartn_y 38.873 _atom_site.Cartn_z -1.805 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.56 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 95 _model_server_stats.parse_time_ms 37 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #