data_8JHH
#
_model_server_result.job_id            266rei5p1x2y6JdeX1uRyQ 
_model_server_result.datetime_utc      '2024-10-10 06:21:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jhh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":802}' 
#
_entry.id    8JHH 
#
_exptl.entry_id    8JHH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8JHH 
_cell.length_a            89.2 
_cell.length_b            211.003 
_cell.length_c            211.175 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JHH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        24 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 524 A CYS 524 1_555 A SG CYS 531 A CYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 A SG CYS 646 A CYS 646 1_555 A SG CYS 653 A CYS 653 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf3 A SG CYS 686 A CYS 686 1_555 A SG CYS 692 A CYS 692 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 B SG CYS 524 B CYS 524 1_555 B SG CYS 531 B CYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf5 B SG CYS 646 B CYS 646 1_555 B SG CYS 653 B CYS 653 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf6 B SG CYS 686 B CYS 686 1_555 B SG CYS 692 B CYS 692 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8JHH 
_atom_sites.fract_transf_matrix[1][1]    0.011211 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004739 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004735 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 801 801 GOL GOL . 
D 2 GOL A 1 802 802 GOL GOL . 
E 2 GOL B 1 801 801 GOL GOL . 
F 3 HOH A 1 901 136 HOH HOH . 
F 3 HOH A 2 902 46 HOH HOH . 
F 3 HOH A 3 903 117 HOH HOH . 
F 3 HOH A 4 904 6 HOH HOH . 
F 3 HOH A 5 905 170 HOH HOH . 
F 3 HOH A 6 906 150 HOH HOH . 
F 3 HOH A 7 907 195 HOH HOH . 
F 3 HOH A 8 908 216 HOH HOH . 
F 3 HOH A 9 909 50 HOH HOH . 
F 3 HOH A 10 910 212 HOH HOH . 
F 3 HOH A 11 911 188 HOH HOH . 
F 3 HOH A 12 912 44 HOH HOH . 
F 3 HOH A 13 913 60 HOH HOH . 
F 3 HOH A 14 914 82 HOH HOH . 
F 3 HOH A 15 915 51 HOH HOH . 
F 3 HOH A 16 916 155 HOH HOH . 
F 3 HOH A 17 917 56 HOH HOH . 
F 3 HOH A 18 918 30 HOH HOH . 
F 3 HOH A 19 919 164 HOH HOH . 
F 3 HOH A 20 920 208 HOH HOH . 
F 3 HOH A 21 921 197 HOH HOH . 
F 3 HOH A 22 922 109 HOH HOH . 
F 3 HOH A 23 923 114 HOH HOH . 
F 3 HOH A 24 924 2 HOH HOH . 
F 3 HOH A 25 925 162 HOH HOH . 
F 3 HOH A 26 926 80 HOH HOH . 
F 3 HOH A 27 927 145 HOH HOH . 
F 3 HOH A 28 928 168 HOH HOH . 
F 3 HOH A 29 929 29 HOH HOH . 
F 3 HOH A 30 930 96 HOH HOH . 
F 3 HOH A 31 931 42 HOH HOH . 
F 3 HOH A 32 932 17 HOH HOH . 
F 3 HOH A 33 933 104 HOH HOH . 
F 3 HOH A 34 934 147 HOH HOH . 
F 3 HOH A 35 935 31 HOH HOH . 
F 3 HOH A 36 936 58 HOH HOH . 
F 3 HOH A 37 937 120 HOH HOH . 
F 3 HOH A 38 938 108 HOH HOH . 
F 3 HOH A 39 939 137 HOH HOH . 
F 3 HOH A 40 940 15 HOH HOH . 
F 3 HOH A 41 941 187 HOH HOH . 
F 3 HOH A 42 942 43 HOH HOH . 
F 3 HOH A 43 943 115 HOH HOH . 
F 3 HOH A 44 944 87 HOH HOH . 
F 3 HOH A 45 945 10 HOH HOH . 
F 3 HOH A 46 946 19 HOH HOH . 
F 3 HOH A 47 947 234 HOH HOH . 
F 3 HOH A 48 948 143 HOH HOH . 
F 3 HOH A 49 949 92 HOH HOH . 
F 3 HOH A 50 950 154 HOH HOH . 
F 3 HOH A 51 951 28 HOH HOH . 
F 3 HOH A 52 952 24 HOH HOH . 
F 3 HOH A 53 953 8 HOH HOH . 
F 3 HOH A 54 954 235 HOH HOH . 
F 3 HOH A 55 955 233 HOH HOH . 
F 3 HOH A 56 956 190 HOH HOH . 
F 3 HOH A 57 957 124 HOH HOH . 
F 3 HOH A 58 958 68 HOH HOH . 
F 3 HOH A 59 959 200 HOH HOH . 
F 3 HOH A 60 960 64 HOH HOH . 
F 3 HOH A 61 961 9 HOH HOH . 
F 3 HOH A 62 962 3 HOH HOH . 
F 3 HOH A 63 963 23 HOH HOH . 
F 3 HOH A 64 964 151 HOH HOH . 
F 3 HOH A 65 965 132 HOH HOH . 
F 3 HOH A 66 966 36 HOH HOH . 
F 3 HOH A 67 967 93 HOH HOH . 
F 3 HOH A 68 968 172 HOH HOH . 
F 3 HOH A 69 969 79 HOH HOH . 
F 3 HOH A 70 970 207 HOH HOH . 
F 3 HOH A 71 971 52 HOH HOH . 
F 3 HOH A 72 972 47 HOH HOH . 
F 3 HOH A 73 973 67 HOH HOH . 
F 3 HOH A 74 974 179 HOH HOH . 
F 3 HOH A 75 975 83 HOH HOH . 
F 3 HOH A 76 976 97 HOH HOH . 
F 3 HOH A 77 977 158 HOH HOH . 
F 3 HOH A 78 978 138 HOH HOH . 
F 3 HOH A 79 979 226 HOH HOH . 
F 3 HOH A 80 980 73 HOH HOH . 
F 3 HOH A 81 981 90 HOH HOH . 
F 3 HOH A 82 982 209 HOH HOH . 
F 3 HOH A 83 983 110 HOH HOH . 
F 3 HOH A 84 984 59 HOH HOH . 
F 3 HOH A 85 985 128 HOH HOH . 
F 3 HOH A 86 986 185 HOH HOH . 
F 3 HOH A 87 987 205 HOH HOH . 
F 3 HOH A 88 988 173 HOH HOH . 
F 3 HOH A 89 989 181 HOH HOH . 
F 3 HOH A 90 990 160 HOH HOH . 
F 3 HOH A 91 991 146 HOH HOH . 
F 3 HOH A 92 992 13 HOH HOH . 
F 3 HOH A 93 993 153 HOH HOH . 
F 3 HOH A 94 994 194 HOH HOH . 
F 3 HOH A 95 995 38 HOH HOH . 
F 3 HOH A 96 996 77 HOH HOH . 
F 3 HOH A 97 997 223 HOH HOH . 
F 3 HOH A 98 998 139 HOH HOH . 
F 3 HOH A 99 999 141 HOH HOH . 
F 3 HOH A 100 1000 169 HOH HOH . 
F 3 HOH A 101 1001 122 HOH HOH . 
F 3 HOH A 102 1002 118 HOH HOH . 
F 3 HOH A 103 1003 215 HOH HOH . 
F 3 HOH A 104 1004 7 HOH HOH . 
F 3 HOH A 105 1005 140 HOH HOH . 
F 3 HOH A 106 1006 74 HOH HOH . 
F 3 HOH A 107 1007 232 HOH HOH . 
F 3 HOH A 108 1008 193 HOH HOH . 
F 3 HOH A 109 1009 210 HOH HOH . 
F 3 HOH A 110 1010 218 HOH HOH . 
F 3 HOH A 111 1011 220 HOH HOH . 
F 3 HOH A 112 1012 222 HOH HOH . 
F 3 HOH A 113 1013 221 HOH HOH . 
F 3 HOH A 114 1014 86 HOH HOH . 
F 3 HOH A 115 1015 214 HOH HOH . 
F 3 HOH A 116 1016 102 HOH HOH . 
F 3 HOH A 117 1017 199 HOH HOH . 
F 3 HOH A 118 1018 229 HOH HOH . 
F 3 HOH A 119 1019 219 HOH HOH . 
F 3 HOH A 120 1020 227 HOH HOH . 
F 3 HOH A 121 1021 161 HOH HOH . 
F 3 HOH A 122 1022 84 HOH HOH . 
F 3 HOH A 123 1023 236 HOH HOH . 
F 3 HOH A 124 1024 228 HOH HOH . 
F 3 HOH A 125 1025 152 HOH HOH . 
F 3 HOH A 126 1026 130 HOH HOH . 
G 3 HOH B 1 901 12 HOH HOH . 
G 3 HOH B 2 902 111 HOH HOH . 
G 3 HOH B 3 903 204 HOH HOH . 
G 3 HOH B 4 904 72 HOH HOH . 
G 3 HOH B 5 905 100 HOH HOH . 
G 3 HOH B 6 906 63 HOH HOH . 
G 3 HOH B 7 907 33 HOH HOH . 
G 3 HOH B 8 908 175 HOH HOH . 
G 3 HOH B 9 909 178 HOH HOH . 
G 3 HOH B 10 910 81 HOH HOH . 
G 3 HOH B 11 911 123 HOH HOH . 
G 3 HOH B 12 912 11 HOH HOH . 
G 3 HOH B 13 913 4 HOH HOH . 
G 3 HOH B 14 914 20 HOH HOH . 
G 3 HOH B 15 915 57 HOH HOH . 
G 3 HOH B 16 916 103 HOH HOH . 
G 3 HOH B 17 917 177 HOH HOH . 
G 3 HOH B 18 918 113 HOH HOH . 
G 3 HOH B 19 919 66 HOH HOH . 
G 3 HOH B 20 920 107 HOH HOH . 
G 3 HOH B 21 921 98 HOH HOH . 
G 3 HOH B 22 922 91 HOH HOH . 
G 3 HOH B 23 923 65 HOH HOH . 
G 3 HOH B 24 924 159 HOH HOH . 
G 3 HOH B 25 925 1 HOH HOH . 
G 3 HOH B 26 926 45 HOH HOH . 
G 3 HOH B 27 927 14 HOH HOH . 
G 3 HOH B 28 928 85 HOH HOH . 
G 3 HOH B 29 929 53 HOH HOH . 
G 3 HOH B 30 930 35 HOH HOH . 
G 3 HOH B 31 931 32 HOH HOH . 
G 3 HOH B 32 932 21 HOH HOH . 
G 3 HOH B 33 933 22 HOH HOH . 
G 3 HOH B 34 934 134 HOH HOH . 
G 3 HOH B 35 935 127 HOH HOH . 
G 3 HOH B 36 936 201 HOH HOH . 
G 3 HOH B 37 937 76 HOH HOH . 
G 3 HOH B 38 938 16 HOH HOH . 
G 3 HOH B 39 939 105 HOH HOH . 
G 3 HOH B 40 940 99 HOH HOH . 
G 3 HOH B 41 941 75 HOH HOH . 
G 3 HOH B 42 942 116 HOH HOH . 
G 3 HOH B 43 943 95 HOH HOH . 
G 3 HOH B 44 944 142 HOH HOH . 
G 3 HOH B 45 945 25 HOH HOH . 
G 3 HOH B 46 946 54 HOH HOH . 
G 3 HOH B 47 947 126 HOH HOH . 
G 3 HOH B 48 948 119 HOH HOH . 
G 3 HOH B 49 949 213 HOH HOH . 
G 3 HOH B 50 950 34 HOH HOH . 
G 3 HOH B 51 951 129 HOH HOH . 
G 3 HOH B 52 952 174 HOH HOH . 
G 3 HOH B 53 953 182 HOH HOH . 
G 3 HOH B 54 954 166 HOH HOH . 
G 3 HOH B 55 955 39 HOH HOH . 
G 3 HOH B 56 956 196 HOH HOH . 
G 3 HOH B 57 957 37 HOH HOH . 
G 3 HOH B 58 958 202 HOH HOH . 
G 3 HOH B 59 959 135 HOH HOH . 
G 3 HOH B 60 960 156 HOH HOH . 
G 3 HOH B 61 961 5 HOH HOH . 
G 3 HOH B 62 962 191 HOH HOH . 
G 3 HOH B 63 963 18 HOH HOH . 
G 3 HOH B 64 964 69 HOH HOH . 
G 3 HOH B 65 965 183 HOH HOH . 
G 3 HOH B 66 966 148 HOH HOH . 
G 3 HOH B 67 967 165 HOH HOH . 
G 3 HOH B 68 968 206 HOH HOH . 
G 3 HOH B 69 969 157 HOH HOH . 
G 3 HOH B 70 970 26 HOH HOH . 
G 3 HOH B 71 971 78 HOH HOH . 
G 3 HOH B 72 972 131 HOH HOH . 
G 3 HOH B 73 973 40 HOH HOH . 
G 3 HOH B 74 974 70 HOH HOH . 
G 3 HOH B 75 975 186 HOH HOH . 
G 3 HOH B 76 976 176 HOH HOH . 
G 3 HOH B 77 977 101 HOH HOH . 
G 3 HOH B 78 978 61 HOH HOH . 
G 3 HOH B 79 979 55 HOH HOH . 
G 3 HOH B 80 980 125 HOH HOH . 
G 3 HOH B 81 981 198 HOH HOH . 
G 3 HOH B 82 982 211 HOH HOH . 
G 3 HOH B 83 983 48 HOH HOH . 
G 3 HOH B 84 984 149 HOH HOH . 
G 3 HOH B 85 985 62 HOH HOH . 
G 3 HOH B 86 986 112 HOH HOH . 
G 3 HOH B 87 987 49 HOH HOH . 
G 3 HOH B 88 988 89 HOH HOH . 
G 3 HOH B 89 989 192 HOH HOH . 
G 3 HOH B 90 990 106 HOH HOH . 
G 3 HOH B 91 991 71 HOH HOH . 
G 3 HOH B 92 992 217 HOH HOH . 
G 3 HOH B 93 993 88 HOH HOH . 
G 3 HOH B 94 994 163 HOH HOH . 
G 3 HOH B 95 995 171 HOH HOH . 
G 3 HOH B 96 996 184 HOH HOH . 
G 3 HOH B 97 997 41 HOH HOH . 
G 3 HOH B 98 998 133 HOH HOH . 
G 3 HOH B 99 999 27 HOH HOH . 
G 3 HOH B 100 1000 225 HOH HOH . 
G 3 HOH B 101 1001 144 HOH HOH . 
G 3 HOH B 102 1002 230 HOH HOH . 
G 3 HOH B 103 1003 121 HOH HOH . 
G 3 HOH B 104 1004 94 HOH HOH . 
G 3 HOH B 105 1005 224 HOH HOH . 
G 3 HOH B 106 1006 167 HOH HOH . 
G 3 HOH B 107 1007 180 HOH HOH . 
G 3 HOH B 108 1008 231 HOH HOH . 
G 3 HOH B 109 1009 203 HOH HOH . 
G 3 HOH B 110 1010 189 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 2 -2.44 -16.594 -37.085 1 37.88 ? C1 GOL 802 A 1 
HETATM 2 O O1 GOL . . . D 2 -3.225 -15.617 -36.482 1 37.64 ? O1 GOL 802 A 1 
HETATM 3 C C2 GOL . . . D 2 -1.074 -15.948 -37.328 1 33.96 ? C2 GOL 802 A 1 
HETATM 4 O O2 GOL . . . D 2 -0.502 -15.522 -36.133 1 38.95 ? O2 GOL 802 A 1 
HETATM 5 C C3 GOL . . . D 2 -0.264 -17.061 -38.021 1 35.85 ? C3 GOL 802 A 1 
HETATM 6 O O3 GOL . . . D 2 0.371 -16.477 -39.117 1 30.34 ? O3 GOL 802 A 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#