data_8JI5 # _model_server_result.job_id zP0-OsU42A7qbebyG5oobA _model_server_result.datetime_utc '2025-03-12 03:59:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ji5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 8JI5 # _exptl.entry_id 8JI5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JI5 _cell.length_a 65.633 _cell.length_b 65.633 _cell.length_c 117.313 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JI5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 86 A ASP 76 1_555 D FE FE2 . A FE2 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc2 A OD2 ASP 86 A ASP 76 1_555 D FE FE2 . A FE2 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc3 A ND1 HIS 89 A HIS 79 1_555 C FE FE2 . A FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc4 A NE2 HIS 135 A HIS 125 1_555 F NI NI . A NI 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc5 A OE2 GLU 150 A GLU 140 1_555 D FE FE2 . A FE2 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.742 ? metalc ? metalc6 A NE2 HIS 182 A HIS 172 1_555 C FE FE2 . A FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc7 A OE1 GLU 186 A GLU 176 1_555 C FE FE2 . A FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc8 A OE2 GLU 186 A GLU 176 1_555 D FE FE2 . A FE2 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.734 ? metalc ? metalc9 A ND1 HIS 189 A HIS 179 1_555 D FE FE2 . A FE2 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc10 C FE FE2 . A FE2 301 1_555 E O 64X . A 64X 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc11 C FE FE2 . A FE2 301 1_555 E N 64X . A 64X 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc12 F NI NI . A NI 304 1_555 B NE2 HIS 135 B HIS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc13 F NI NI . A NI 304 1_555 B OD2 ASP 136 B ASP 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc14 F NI NI . A NI 304 1_555 K O HOH . B HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc15 B OD1 ASP 86 B ASP 76 1_555 H FE FE2 . B FE2 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc16 B OD2 ASP 86 B ASP 76 1_555 H FE FE2 . B FE2 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc17 B ND1 HIS 89 B HIS 79 1_555 G FE FE2 . B FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc18 B OE2 GLU 150 B GLU 140 1_555 H FE FE2 . B FE2 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.786 ? metalc ? metalc19 B NE2 HIS 182 B HIS 172 1_555 G FE FE2 . B FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc20 B OE1 GLU 186 B GLU 176 1_555 G FE FE2 . B FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? metalc ? metalc21 B OE2 GLU 186 B GLU 176 1_555 H FE FE2 . B FE2 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc22 B ND1 HIS 189 B HIS 179 1_555 H FE FE2 . B FE2 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc23 G FE FE2 . B FE2 301 1_555 I OXT 64X . B 64X 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc24 G FE FE2 . B FE2 301 1_555 I N 64X . B 64X 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc25 G FE FE2 . B FE2 301 1_555 K O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? # _chem_comp.formula 'Fe 2' _chem_comp.formula_weight 55.845 _chem_comp.id FE2 _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8JI5 _atom_sites.fract_transf_matrix[1][1] 0.015236 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015236 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008524 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE2 A 1 301 300 FE2 FE . D 2 FE2 A 1 302 301 FE2 FE . E 3 64X A 1 303 400 64X DRG . F 4 NI A 1 304 500 NI NI . G 2 FE2 B 1 301 300 FE2 FE . H 2 FE2 B 1 302 301 FE2 FE . I 3 64X B 1 303 400 64X DRG . J 5 HOH A 1 401 64 HOH HOH . J 5 HOH A 2 402 155 HOH HOH . J 5 HOH A 3 403 99 HOH HOH . J 5 HOH A 4 404 63 HOH HOH . J 5 HOH A 5 405 10 HOH HOH . J 5 HOH A 6 406 165 HOH HOH . J 5 HOH A 7 407 117 HOH HOH . J 5 HOH A 8 408 1 HOH HOH . J 5 HOH A 9 409 58 HOH HOH . J 5 HOH A 10 410 182 HOH HOH . J 5 HOH A 11 411 180 HOH HOH . J 5 HOH A 12 412 111 HOH HOH . J 5 HOH A 13 413 149 HOH HOH . J 5 HOH A 14 414 152 HOH HOH . J 5 HOH A 15 415 148 HOH HOH . J 5 HOH A 16 416 7 HOH HOH . J 5 HOH A 17 417 112 HOH HOH . J 5 HOH A 18 418 96 HOH HOH . J 5 HOH A 19 419 95 HOH HOH . J 5 HOH A 20 420 115 HOH HOH . J 5 HOH A 21 421 5 HOH HOH . J 5 HOH A 22 422 145 HOH HOH . J 5 HOH A 23 423 80 HOH HOH . J 5 HOH A 24 424 9 HOH HOH . J 5 HOH A 25 425 39 HOH HOH . J 5 HOH A 26 426 184 HOH HOH . J 5 HOH A 27 427 91 HOH HOH . J 5 HOH A 28 428 6 HOH HOH . J 5 HOH A 29 429 65 HOH HOH . J 5 HOH A 30 430 179 HOH HOH . J 5 HOH A 31 431 89 HOH HOH . J 5 HOH A 32 432 60 HOH HOH . J 5 HOH A 33 433 143 HOH HOH . J 5 HOH A 34 434 104 HOH HOH . J 5 HOH A 35 435 97 HOH HOH . J 5 HOH A 36 436 100 HOH HOH . J 5 HOH A 37 437 150 HOH HOH . J 5 HOH A 38 438 4 HOH HOH . J 5 HOH A 39 439 192 HOH HOH . J 5 HOH A 40 440 116 HOH HOH . J 5 HOH A 41 441 84 HOH HOH . J 5 HOH A 42 442 20 HOH HOH . J 5 HOH A 43 443 56 HOH HOH . J 5 HOH A 44 444 61 HOH HOH . J 5 HOH A 45 445 110 HOH HOH . J 5 HOH A 46 446 114 HOH HOH . J 5 HOH A 47 447 137 HOH HOH . J 5 HOH A 48 448 113 HOH HOH . J 5 HOH A 49 449 103 HOH HOH . J 5 HOH A 50 450 183 HOH HOH . J 5 HOH A 51 451 54 HOH HOH . J 5 HOH A 52 452 67 HOH HOH . J 5 HOH A 53 453 194 HOH HOH . J 5 HOH A 54 454 82 HOH HOH . J 5 HOH A 55 455 92 HOH HOH . J 5 HOH A 56 456 70 HOH HOH . J 5 HOH A 57 457 87 HOH HOH . J 5 HOH A 58 458 38 HOH HOH . J 5 HOH A 59 459 3 HOH HOH . J 5 HOH A 60 460 68 HOH HOH . J 5 HOH A 61 461 119 HOH HOH . J 5 HOH A 62 462 55 HOH HOH . J 5 HOH A 63 463 101 HOH HOH . J 5 HOH A 64 464 13 HOH HOH . J 5 HOH A 65 465 181 HOH HOH . J 5 HOH A 66 466 81 HOH HOH . J 5 HOH A 67 467 118 HOH HOH . J 5 HOH A 68 468 151 HOH HOH . J 5 HOH A 69 469 153 HOH HOH . J 5 HOH A 70 470 144 HOH HOH . J 5 HOH A 71 471 168 HOH HOH . J 5 HOH A 72 472 90 HOH HOH . J 5 HOH A 73 473 85 HOH HOH . J 5 HOH A 74 474 62 HOH HOH . J 5 HOH A 75 475 178 HOH HOH . J 5 HOH A 76 476 193 HOH HOH . J 5 HOH A 77 477 98 HOH HOH . J 5 HOH A 78 478 187 HOH HOH . J 5 HOH A 79 479 154 HOH HOH . J 5 HOH A 80 480 86 HOH HOH . J 5 HOH A 81 481 27 HOH HOH . J 5 HOH A 82 482 156 HOH HOH . J 5 HOH A 83 483 83 HOH HOH . J 5 HOH A 84 484 79 HOH HOH . J 5 HOH A 85 485 78 HOH HOH . J 5 HOH A 86 486 142 HOH HOH . J 5 HOH A 87 487 164 HOH HOH . J 5 HOH A 88 488 160 HOH HOH . K 5 HOH B 1 401 2 HOH HOH . K 5 HOH B 2 402 170 HOH HOH . K 5 HOH B 3 403 77 HOH HOH . K 5 HOH B 4 404 132 HOH HOH . K 5 HOH B 5 405 157 HOH HOH . K 5 HOH B 6 406 141 HOH HOH . K 5 HOH B 7 407 125 HOH HOH . K 5 HOH B 8 408 177 HOH HOH . K 5 HOH B 9 409 32 HOH HOH . K 5 HOH B 10 410 174 HOH HOH . K 5 HOH B 11 411 25 HOH HOH . K 5 HOH B 12 412 41 HOH HOH . K 5 HOH B 13 413 106 HOH HOH . K 5 HOH B 14 414 94 HOH HOH . K 5 HOH B 15 415 14 HOH HOH . K 5 HOH B 16 416 129 HOH HOH . K 5 HOH B 17 417 30 HOH HOH . K 5 HOH B 18 418 123 HOH HOH . K 5 HOH B 19 419 136 HOH HOH . K 5 HOH B 20 420 19 HOH HOH . K 5 HOH B 21 421 71 HOH HOH . K 5 HOH B 22 422 140 HOH HOH . K 5 HOH B 23 423 46 HOH HOH . K 5 HOH B 24 424 37 HOH HOH . K 5 HOH B 25 425 189 HOH HOH . K 5 HOH B 26 426 108 HOH HOH . K 5 HOH B 27 427 121 HOH HOH . K 5 HOH B 28 428 191 HOH HOH . K 5 HOH B 29 429 45 HOH HOH . K 5 HOH B 30 430 47 HOH HOH . K 5 HOH B 31 431 73 HOH HOH . K 5 HOH B 32 432 166 HOH HOH . K 5 HOH B 33 433 173 HOH HOH . K 5 HOH B 34 434 102 HOH HOH . K 5 HOH B 35 435 53 HOH HOH . K 5 HOH B 36 436 28 HOH HOH . K 5 HOH B 37 437 35 HOH HOH . K 5 HOH B 38 438 130 HOH HOH . K 5 HOH B 39 439 22 HOH HOH . K 5 HOH B 40 440 188 HOH HOH . K 5 HOH B 41 441 66 HOH HOH . K 5 HOH B 42 442 40 HOH HOH . K 5 HOH B 43 443 16 HOH HOH . K 5 HOH B 44 444 15 HOH HOH . K 5 HOH B 45 445 11 HOH HOH . K 5 HOH B 46 446 36 HOH HOH . K 5 HOH B 47 447 134 HOH HOH . K 5 HOH B 48 448 42 HOH HOH . K 5 HOH B 49 449 133 HOH HOH . K 5 HOH B 50 450 74 HOH HOH . K 5 HOH B 51 451 135 HOH HOH . K 5 HOH B 52 452 107 HOH HOH . K 5 HOH B 53 453 24 HOH HOH . K 5 HOH B 54 454 138 HOH HOH . K 5 HOH B 55 455 122 HOH HOH . K 5 HOH B 56 456 51 HOH HOH . K 5 HOH B 57 457 12 HOH HOH . K 5 HOH B 58 458 31 HOH HOH . K 5 HOH B 59 459 26 HOH HOH . K 5 HOH B 60 460 169 HOH HOH . K 5 HOH B 61 461 72 HOH HOH . K 5 HOH B 62 462 186 HOH HOH . K 5 HOH B 63 463 57 HOH HOH . K 5 HOH B 64 464 128 HOH HOH . K 5 HOH B 65 465 52 HOH HOH . K 5 HOH B 66 466 75 HOH HOH . K 5 HOH B 67 467 29 HOH HOH . K 5 HOH B 68 468 76 HOH HOH . K 5 HOH B 69 469 33 HOH HOH . K 5 HOH B 70 470 18 HOH HOH . K 5 HOH B 71 471 175 HOH HOH . K 5 HOH B 72 472 146 HOH HOH . K 5 HOH B 73 473 147 HOH HOH . K 5 HOH B 74 474 49 HOH HOH . K 5 HOH B 75 475 34 HOH HOH . K 5 HOH B 76 476 159 HOH HOH . K 5 HOH B 77 477 23 HOH HOH . K 5 HOH B 78 478 120 HOH HOH . K 5 HOH B 79 479 8 HOH HOH . K 5 HOH B 80 480 127 HOH HOH . K 5 HOH B 81 481 17 HOH HOH . K 5 HOH B 82 482 124 HOH HOH . K 5 HOH B 83 483 88 HOH HOH . K 5 HOH B 84 484 109 HOH HOH . K 5 HOH B 85 485 21 HOH HOH . K 5 HOH B 86 486 158 HOH HOH . K 5 HOH B 87 487 105 HOH HOH . K 5 HOH B 88 488 161 HOH HOH . K 5 HOH B 89 489 139 HOH HOH . K 5 HOH B 90 490 43 HOH HOH . K 5 HOH B 91 491 44 HOH HOH . K 5 HOH B 92 492 50 HOH HOH . K 5 HOH B 93 493 48 HOH HOH . K 5 HOH B 94 494 93 HOH HOH . K 5 HOH B 95 495 69 HOH HOH . K 5 HOH B 96 496 131 HOH HOH . K 5 HOH B 97 497 176 HOH HOH . K 5 HOH B 98 498 126 HOH HOH . K 5 HOH B 99 499 185 HOH HOH . K 5 HOH B 100 500 190 HOH HOH . K 5 HOH B 101 501 167 HOH HOH . K 5 HOH B 102 502 59 HOH HOH . K 5 HOH B 103 503 171 HOH HOH . K 5 HOH B 104 504 172 HOH HOH . K 5 HOH B 105 505 163 HOH HOH . K 5 HOH B 106 506 162 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE2 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 2 _atom_site.Cartn_x 51.171 _atom_site.Cartn_y 14.896 _atom_site.Cartn_z -17.86 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14.88 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE2 _atom_site.auth_seq_id 301 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #