data_8JIG
#
_model_server_result.job_id            0vcT4p-K4YKxJRDGiYOPwQ 
_model_server_result.datetime_utc      '2024-10-11 02:17:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jig 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":701}' 
#
_entry.id    8JIG 
#
_exptl.entry_id    8JIG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              298.295 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "N-[2,4-bis(oxidanylidene)-1H-pyrimidin-5-yl]-N'-oxidanyl-octanediamide" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8JIG 
_cell.length_a            65.875 
_cell.length_b            65.875 
_cell.length_c            95.634 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JIG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C12 H18 N4 O5' 
_chem_comp.formula_weight    298.295 
_chem_comp.id                8JA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "N-[2,4-bis(oxidanylidene)-1H-pyrimidin-5-yl]-N'-oxidanyl-octanediamide" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O01 C02 8JA doub 1 n n 
C02 N03 8JA sing 2 n n 
C02 C08 8JA sing 3 n n 
N09 C10 8JA sing 4 n n 
N09 C08 8JA sing 5 n n 
C12 C10 8JA sing 6 n n 
C12 C13 8JA sing 7 n n 
C10 O11 8JA doub 8 n n 
C13 C14 8JA sing 9 n n 
N03 C04 8JA sing 10 n n 
C08 C07 8JA doub 11 n n 
C04 O05 8JA doub 12 n n 
C04 N06 8JA sing 13 n n 
C14 C15 8JA sing 14 n n 
C07 N06 8JA sing 15 n n 
C15 C16 8JA sing 16 n n 
C16 C17 8JA sing 17 n n 
C17 C18 8JA sing 18 n n 
O19 C18 8JA doub 19 n n 
C18 N20 8JA sing 20 n n 
N20 O21 8JA sing 21 n n 
C13 H1 8JA sing 22 n n 
C13 H2 8JA sing 23 n n 
C15 H3 8JA sing 24 n n 
C15 H4 8JA sing 25 n n 
C17 H5 8JA sing 26 n n 
C17 H6 8JA sing 27 n n 
C07 H7 8JA sing 28 n n 
C12 H8 8JA sing 29 n n 
C12 H9 8JA sing 30 n n 
C14 H10 8JA sing 31 n n 
C14 H11 8JA sing 32 n n 
C16 H12 8JA sing 33 n n 
C16 H13 8JA sing 34 n n 
N03 H14 8JA sing 35 n n 
N09 H16 8JA sing 36 n n 
N20 H17 8JA sing 37 n n 
O21 H18 8JA sing 38 n n 
N06 H15 8JA sing 39 n n 
#
_atom_sites.entry_id                     8JIG 
_atom_sites.fract_transf_matrix[1][1]    0.01518 
_atom_sites.fract_transf_matrix[1][2]    0.008764 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017529 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010457 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 8JA A 1 701 1 8JA LIG . 
D 2 8JA B 1 701 2 8JA LIG . 
E 3 HOH A 1 801 81 HOH HOH . 
E 3 HOH A 2 802 115 HOH HOH . 
E 3 HOH A 3 803 76 HOH HOH . 
E 3 HOH A 4 804 11 HOH HOH . 
E 3 HOH A 5 805 23 HOH HOH . 
E 3 HOH A 6 806 35 HOH HOH . 
E 3 HOH A 7 807 67 HOH HOH . 
E 3 HOH A 8 808 3 HOH HOH . 
E 3 HOH A 9 809 80 HOH HOH . 
E 3 HOH A 10 810 12 HOH HOH . 
E 3 HOH A 11 811 143 HOH HOH . 
E 3 HOH A 12 812 120 HOH HOH . 
E 3 HOH A 13 813 49 HOH HOH . 
E 3 HOH A 14 814 106 HOH HOH . 
E 3 HOH A 15 815 108 HOH HOH . 
E 3 HOH A 16 816 1 HOH HOH . 
E 3 HOH A 17 817 116 HOH HOH . 
E 3 HOH A 18 818 142 HOH HOH . 
E 3 HOH A 19 819 18 HOH HOH . 
E 3 HOH A 20 820 133 HOH HOH . 
E 3 HOH A 21 821 20 HOH HOH . 
E 3 HOH A 22 822 52 HOH HOH . 
E 3 HOH A 23 823 75 HOH HOH . 
E 3 HOH A 24 824 107 HOH HOH . 
E 3 HOH A 25 825 114 HOH HOH . 
E 3 HOH A 26 826 93 HOH HOH . 
E 3 HOH A 27 827 42 HOH HOH . 
E 3 HOH A 28 828 73 HOH HOH . 
E 3 HOH A 29 829 85 HOH HOH . 
E 3 HOH A 30 830 78 HOH HOH . 
E 3 HOH A 31 831 90 HOH HOH . 
E 3 HOH A 32 832 10 HOH HOH . 
E 3 HOH A 33 833 62 HOH HOH . 
E 3 HOH A 34 834 60 HOH HOH . 
E 3 HOH A 35 835 146 HOH HOH . 
E 3 HOH A 36 836 14 HOH HOH . 
E 3 HOH A 37 837 50 HOH HOH . 
E 3 HOH A 38 838 110 HOH HOH . 
E 3 HOH A 39 839 25 HOH HOH . 
E 3 HOH A 40 840 4 HOH HOH . 
E 3 HOH A 41 841 148 HOH HOH . 
E 3 HOH A 42 842 26 HOH HOH . 
E 3 HOH A 43 843 135 HOH HOH . 
E 3 HOH A 44 844 137 HOH HOH . 
E 3 HOH A 45 845 87 HOH HOH . 
E 3 HOH A 46 846 34 HOH HOH . 
E 3 HOH A 47 847 22 HOH HOH . 
E 3 HOH A 48 848 6 HOH HOH . 
E 3 HOH A 49 849 129 HOH HOH . 
E 3 HOH A 50 850 102 HOH HOH . 
E 3 HOH A 51 851 134 HOH HOH . 
E 3 HOH A 52 852 41 HOH HOH . 
E 3 HOH A 53 853 127 HOH HOH . 
E 3 HOH A 54 854 125 HOH HOH . 
E 3 HOH A 55 855 32 HOH HOH . 
E 3 HOH A 56 856 70 HOH HOH . 
E 3 HOH A 57 857 33 HOH HOH . 
E 3 HOH A 58 858 16 HOH HOH . 
E 3 HOH A 59 859 139 HOH HOH . 
E 3 HOH A 60 860 105 HOH HOH . 
E 3 HOH A 61 861 17 HOH HOH . 
E 3 HOH A 62 862 138 HOH HOH . 
E 3 HOH A 63 863 122 HOH HOH . 
E 3 HOH A 64 864 69 HOH HOH . 
E 3 HOH A 65 865 98 HOH HOH . 
E 3 HOH A 66 866 97 HOH HOH . 
E 3 HOH A 67 867 121 HOH HOH . 
F 3 HOH B 1 801 8 HOH HOH . 
F 3 HOH B 2 802 141 HOH HOH . 
F 3 HOH B 3 803 131 HOH HOH . 
F 3 HOH B 4 804 39 HOH HOH . 
F 3 HOH B 5 805 36 HOH HOH . 
F 3 HOH B 6 806 68 HOH HOH . 
F 3 HOH B 7 807 65 HOH HOH . 
F 3 HOH B 8 808 5 HOH HOH . 
F 3 HOH B 9 809 45 HOH HOH . 
F 3 HOH B 10 810 29 HOH HOH . 
F 3 HOH B 11 811 59 HOH HOH . 
F 3 HOH B 12 812 38 HOH HOH . 
F 3 HOH B 13 813 72 HOH HOH . 
F 3 HOH B 14 814 13 HOH HOH . 
F 3 HOH B 15 815 124 HOH HOH . 
F 3 HOH B 16 816 145 HOH HOH . 
F 3 HOH B 17 817 58 HOH HOH . 
F 3 HOH B 18 818 21 HOH HOH . 
F 3 HOH B 19 819 103 HOH HOH . 
F 3 HOH B 20 820 88 HOH HOH . 
F 3 HOH B 21 821 71 HOH HOH . 
F 3 HOH B 22 822 15 HOH HOH . 
F 3 HOH B 23 823 7 HOH HOH . 
F 3 HOH B 24 824 104 HOH HOH . 
F 3 HOH B 25 825 63 HOH HOH . 
F 3 HOH B 26 826 2 HOH HOH . 
F 3 HOH B 27 827 53 HOH HOH . 
F 3 HOH B 28 828 132 HOH HOH . 
F 3 HOH B 29 829 55 HOH HOH . 
F 3 HOH B 30 830 96 HOH HOH . 
F 3 HOH B 31 831 95 HOH HOH . 
F 3 HOH B 32 832 44 HOH HOH . 
F 3 HOH B 33 833 126 HOH HOH . 
F 3 HOH B 34 834 37 HOH HOH . 
F 3 HOH B 35 835 92 HOH HOH . 
F 3 HOH B 36 836 83 HOH HOH . 
F 3 HOH B 37 837 136 HOH HOH . 
F 3 HOH B 38 838 24 HOH HOH . 
F 3 HOH B 39 839 54 HOH HOH . 
F 3 HOH B 40 840 111 HOH HOH . 
F 3 HOH B 41 841 56 HOH HOH . 
F 3 HOH B 42 842 112 HOH HOH . 
F 3 HOH B 43 843 9 HOH HOH . 
F 3 HOH B 44 844 82 HOH HOH . 
F 3 HOH B 45 845 66 HOH HOH . 
F 3 HOH B 46 846 117 HOH HOH . 
F 3 HOH B 47 847 123 HOH HOH . 
F 3 HOH B 48 848 99 HOH HOH . 
F 3 HOH B 49 849 64 HOH HOH . 
F 3 HOH B 50 850 79 HOH HOH . 
F 3 HOH B 51 851 47 HOH HOH . 
F 3 HOH B 52 852 43 HOH HOH . 
F 3 HOH B 53 853 51 HOH HOH . 
F 3 HOH B 54 854 27 HOH HOH . 
F 3 HOH B 55 855 31 HOH HOH . 
F 3 HOH B 56 856 130 HOH HOH . 
F 3 HOH B 57 857 91 HOH HOH . 
F 3 HOH B 58 858 140 HOH HOH . 
F 3 HOH B 59 859 74 HOH HOH . 
F 3 HOH B 60 860 118 HOH HOH . 
F 3 HOH B 61 861 101 HOH HOH . 
F 3 HOH B 62 862 100 HOH HOH . 
F 3 HOH B 63 863 30 HOH HOH . 
F 3 HOH B 64 864 86 HOH HOH . 
F 3 HOH B 65 865 89 HOH HOH . 
F 3 HOH B 66 866 57 HOH HOH . 
F 3 HOH B 67 867 109 HOH HOH . 
F 3 HOH B 68 868 144 HOH HOH . 
F 3 HOH B 69 869 147 HOH HOH . 
F 3 HOH B 70 870 40 HOH HOH . 
F 3 HOH B 71 871 28 HOH HOH . 
F 3 HOH B 72 872 128 HOH HOH . 
F 3 HOH B 73 873 119 HOH HOH . 
F 3 HOH B 74 874 84 HOH HOH . 
F 3 HOH B 75 875 61 HOH HOH . 
F 3 HOH B 76 876 113 HOH HOH . 
F 3 HOH B 77 877 94 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 8JA . . . D 2 40.001 -16.43 11.777 1 38.42 ? C10 8JA 701 B 1 
HETATM 2 C C13 8JA . . . D 2 38.575 -17.56 10.181 1 29.52 ? C13 8JA 701 B 1 
HETATM 3 C C15 8JA . . . D 2 36.515 -18.179 9.073 1 30.48 ? C15 8JA 701 B 1 
HETATM 4 C C17 8JA . . . D 2 34.854 -18.338 7.085 1 30.81 ? C17 8JA 701 B 1 
HETATM 5 C C02 8JA . . . D 2 42.936 -16.741 10.359 1 45.19 ? C02 8JA 701 B 1 
HETATM 6 C C04 8JA . . . D 2 44.796 -15.594 10.863 1 30.52 ? C04 8JA 701 B 1 
HETATM 7 C C07 8JA . . . D 2 43.189 -15.763 12.455 1 45.69 ? C07 8JA 701 B 1 
HETATM 8 C C08 8JA . . . D 2 42.398 -16.475 11.593 1 35.67 ? C08 8JA 701 B 1 
HETATM 9 C C12 8JA . . . D 2 38.774 -17.215 11.587 1 27.06 ? C12 8JA 701 B 1 
HETATM 10 C C14 8JA . . . D 2 37.281 -17.085 9.747 1 31.21 ? C14 8JA 701 B 1 
HETATM 11 C C16 8JA . . . D 2 35.267 -17.63 8.386 1 30.91 ? C16 8JA 701 B 1 
HETATM 12 C C18 8JA . . . D 2 34.696 -17.677 5.722 1 28.82 ? C18 8JA 701 B 1 
HETATM 13 N N03 8JA . . . D 2 44.124 -16.267 10.067 1 40.22 ? N03 8JA 701 B 1 
HETATM 14 N N06 8JA . . . D 2 44.403 -15.337 12.032 1 40.63 ? N06 8JA 701 B 1 
HETATM 15 N N09 8JA . . . D 2 41.227 -16.918 11.975 1 39.02 ? N09 8JA 701 B 1 
HETATM 16 N N20 8JA . . . D 2 33.937 -18.32 4.933 1 33.16 ? N20 8JA 701 B 1 
HETATM 17 O O01 8JA . . . D 2 42.323 -17.36 9.511 1 46.63 ? O01 8JA 701 B 1 
HETATM 18 O O05 8JA . . . D 2 45.808 -15.26 10.517 1 35.97 ? O05 8JA 701 B 1 
HETATM 19 O O11 8JA . . . D 2 39.838 -15.142 11.764 1 51.59 ? O11 8JA 701 B 1 
HETATM 20 O O19 8JA . . . D 2 35.222 -16.545 5.203 1 27.21 ? O19 8JA 701 B 1 
HETATM 21 O O21 8JA . . . D 2 32.82 -18.883 5.443 1 35.02 ? O21 8JA 701 B 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           21 
#