data_8JIJ # _model_server_result.job_id GyUlcT67C7vqxOibF98AkQ _model_server_result.datetime_utc '2024-10-10 09:33:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jij # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 8JIJ # _exptl.entry_id 8JIJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8JIJ _cell.length_a 163.485 _cell.length_b 163.485 _cell.length_c 50.203 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JIJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -33.468667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 249 A LYS 309 1_555 B C4A PLP . A PLP 501 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.32 ? metalc ? metalc1 A NE2 HIS 320 A HIS 380 1_555 D ZN ZN . A ZN 503 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc2 A SG CYS 402 A CYS 462 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc3 A SG CYS 412 A CYS 472 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc4 A SG CYS 414 A CYS 474 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc5 A ND1 HIS 417 A HIS 477 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8JIJ _atom_sites.fract_transf_matrix[1][1] 0.006117 _atom_sites.fract_transf_matrix[1][2] 0.003532 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007063 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019919 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 501 500 PLP PLP . C 3 ZN A 1 502 1 ZN ZN . D 3 ZN A 1 503 2 ZN ZN . E 4 HOH A 1 601 51 HOH HOH . E 4 HOH A 2 602 100 HOH HOH . E 4 HOH A 3 603 52 HOH HOH . E 4 HOH A 4 604 39 HOH HOH . E 4 HOH A 5 605 17 HOH HOH . E 4 HOH A 6 606 25 HOH HOH . E 4 HOH A 7 607 41 HOH HOH . E 4 HOH A 8 608 109 HOH HOH . E 4 HOH A 9 609 6 HOH HOH . E 4 HOH A 10 610 11 HOH HOH . E 4 HOH A 11 611 74 HOH HOH . E 4 HOH A 12 612 119 HOH HOH . E 4 HOH A 13 613 43 HOH HOH . E 4 HOH A 14 614 48 HOH HOH . E 4 HOH A 15 615 95 HOH HOH . E 4 HOH A 16 616 34 HOH HOH . E 4 HOH A 17 617 45 HOH HOH . E 4 HOH A 18 618 46 HOH HOH . E 4 HOH A 19 619 102 HOH HOH . E 4 HOH A 20 620 61 HOH HOH . E 4 HOH A 21 621 5 HOH HOH . E 4 HOH A 22 622 10 HOH HOH . E 4 HOH A 23 623 20 HOH HOH . E 4 HOH A 24 624 36 HOH HOH . E 4 HOH A 25 625 7 HOH HOH . E 4 HOH A 26 626 23 HOH HOH . E 4 HOH A 27 627 57 HOH HOH . E 4 HOH A 28 628 40 HOH HOH . E 4 HOH A 29 629 87 HOH HOH . E 4 HOH A 30 630 42 HOH HOH . E 4 HOH A 31 631 64 HOH HOH . E 4 HOH A 32 632 90 HOH HOH . E 4 HOH A 33 633 117 HOH HOH . E 4 HOH A 34 634 106 HOH HOH . E 4 HOH A 35 635 80 HOH HOH . E 4 HOH A 36 636 26 HOH HOH . E 4 HOH A 37 637 18 HOH HOH . E 4 HOH A 38 638 94 HOH HOH . E 4 HOH A 39 639 56 HOH HOH . E 4 HOH A 40 640 59 HOH HOH . E 4 HOH A 41 641 79 HOH HOH . E 4 HOH A 42 642 104 HOH HOH . E 4 HOH A 43 643 66 HOH HOH . E 4 HOH A 44 644 85 HOH HOH . E 4 HOH A 45 645 28 HOH HOH . E 4 HOH A 46 646 13 HOH HOH . E 4 HOH A 47 647 63 HOH HOH . E 4 HOH A 48 648 78 HOH HOH . E 4 HOH A 49 649 60 HOH HOH . E 4 HOH A 50 650 96 HOH HOH . E 4 HOH A 51 651 62 HOH HOH . E 4 HOH A 52 652 67 HOH HOH . E 4 HOH A 53 653 70 HOH HOH . E 4 HOH A 54 654 98 HOH HOH . E 4 HOH A 55 655 15 HOH HOH . E 4 HOH A 56 656 30 HOH HOH . E 4 HOH A 57 657 92 HOH HOH . E 4 HOH A 58 658 38 HOH HOH . E 4 HOH A 59 659 9 HOH HOH . E 4 HOH A 60 660 58 HOH HOH . E 4 HOH A 61 661 103 HOH HOH . E 4 HOH A 62 662 91 HOH HOH . E 4 HOH A 63 663 3 HOH HOH . E 4 HOH A 64 664 4 HOH HOH . E 4 HOH A 65 665 76 HOH HOH . E 4 HOH A 66 666 24 HOH HOH . E 4 HOH A 67 667 69 HOH HOH . E 4 HOH A 68 668 47 HOH HOH . E 4 HOH A 69 669 82 HOH HOH . E 4 HOH A 70 670 1 HOH HOH . E 4 HOH A 71 671 37 HOH HOH . E 4 HOH A 72 672 89 HOH HOH . E 4 HOH A 73 673 49 HOH HOH . E 4 HOH A 74 674 44 HOH HOH . E 4 HOH A 75 675 35 HOH HOH . E 4 HOH A 76 676 2 HOH HOH . E 4 HOH A 77 677 77 HOH HOH . E 4 HOH A 78 678 83 HOH HOH . E 4 HOH A 79 679 97 HOH HOH . E 4 HOH A 80 680 29 HOH HOH . E 4 HOH A 81 681 21 HOH HOH . E 4 HOH A 82 682 88 HOH HOH . E 4 HOH A 83 683 53 HOH HOH . E 4 HOH A 84 684 86 HOH HOH . E 4 HOH A 85 685 65 HOH HOH . E 4 HOH A 86 686 32 HOH HOH . E 4 HOH A 87 687 111 HOH HOH . E 4 HOH A 88 688 54 HOH HOH . E 4 HOH A 89 689 31 HOH HOH . E 4 HOH A 90 690 12 HOH HOH . E 4 HOH A 91 691 22 HOH HOH . E 4 HOH A 92 692 33 HOH HOH . E 4 HOH A 93 693 81 HOH HOH . E 4 HOH A 94 694 84 HOH HOH . E 4 HOH A 95 695 16 HOH HOH . E 4 HOH A 96 696 99 HOH HOH . E 4 HOH A 97 697 19 HOH HOH . E 4 HOH A 98 698 14 HOH HOH . E 4 HOH A 99 699 68 HOH HOH . E 4 HOH A 100 700 75 HOH HOH . E 4 HOH A 101 701 114 HOH HOH . E 4 HOH A 102 702 110 HOH HOH . E 4 HOH A 103 703 71 HOH HOH . E 4 HOH A 104 704 27 HOH HOH . E 4 HOH A 105 705 8 HOH HOH . E 4 HOH A 106 706 116 HOH HOH . E 4 HOH A 107 707 118 HOH HOH . E 4 HOH A 108 708 115 HOH HOH . E 4 HOH A 109 709 112 HOH HOH . E 4 HOH A 110 710 50 HOH HOH . E 4 HOH A 111 711 121 HOH HOH . E 4 HOH A 112 712 101 HOH HOH . E 4 HOH A 113 713 73 HOH HOH . E 4 HOH A 114 714 120 HOH HOH . E 4 HOH A 115 715 55 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 74.461 _atom_site.Cartn_y -50.934 _atom_site.Cartn_z -13.426 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 74.44 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 503 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #