data_8JIK # _model_server_result.job_id Wo-lgrgwKtRfwHmy5vjtFA _model_server_result.datetime_utc '2024-10-10 10:22:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jik # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 8JIK # _exptl.entry_id 8JIK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8JIK _cell.length_a 163.996 _cell.length_b 163.996 _cell.length_c 50.209 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JIK _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 245.994 142.024702 16.736333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 249 A LYS 309 1_555 B C4A PLP . A PLP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.291 ? covale ? covale2 B C4A PLP . A PLP 501 1_555 E N NEH . A NEH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.525 ? metalc ? metalc1 A OD2 ASP 324 A ASP 384 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc2 A SG CYS 402 A CYS 462 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc3 A SG CYS 412 A CYS 472 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc4 A SG CYS 414 A CYS 474 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc5 A ND1 HIS 417 A HIS 477 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc6 C CA CA . A CA 502 1_555 F O HOH . A HOH 657 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 3.044 ? metalc ? metalc7 C CA CA . A CA 502 1_555 F O HOH . A HOH 658 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8JIK _atom_sites.fract_transf_matrix[1][1] 0.006098 _atom_sites.fract_transf_matrix[1][2] 0.003521 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007041 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019917 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 501 500 PLP PLP . C 3 CA A 1 502 1 CA CA . D 4 ZN A 1 503 502 ZN ZN . E 5 NEH A 1 504 503 NEH NEH . F 6 HOH A 1 601 40 HOH HOH . F 6 HOH A 2 602 61 HOH HOH . F 6 HOH A 3 603 62 HOH HOH . F 6 HOH A 4 604 8 HOH HOH . F 6 HOH A 5 605 41 HOH HOH . F 6 HOH A 6 606 34 HOH HOH . F 6 HOH A 7 607 4 HOH HOH . F 6 HOH A 8 608 16 HOH HOH . F 6 HOH A 9 609 33 HOH HOH . F 6 HOH A 10 610 5 HOH HOH . F 6 HOH A 11 611 51 HOH HOH . F 6 HOH A 12 612 55 HOH HOH . F 6 HOH A 13 613 53 HOH HOH . F 6 HOH A 14 614 17 HOH HOH . F 6 HOH A 15 615 35 HOH HOH . F 6 HOH A 16 616 18 HOH HOH . F 6 HOH A 17 617 24 HOH HOH . F 6 HOH A 18 618 58 HOH HOH . F 6 HOH A 19 619 42 HOH HOH . F 6 HOH A 20 620 3 HOH HOH . F 6 HOH A 21 621 14 HOH HOH . F 6 HOH A 22 622 36 HOH HOH . F 6 HOH A 23 623 49 HOH HOH . F 6 HOH A 24 624 57 HOH HOH . F 6 HOH A 25 625 46 HOH HOH . F 6 HOH A 26 626 39 HOH HOH . F 6 HOH A 27 627 15 HOH HOH . F 6 HOH A 28 628 48 HOH HOH . F 6 HOH A 29 629 37 HOH HOH . F 6 HOH A 30 630 7 HOH HOH . F 6 HOH A 31 631 22 HOH HOH . F 6 HOH A 32 632 2 HOH HOH . F 6 HOH A 33 633 56 HOH HOH . F 6 HOH A 34 634 29 HOH HOH . F 6 HOH A 35 635 20 HOH HOH . F 6 HOH A 36 636 26 HOH HOH . F 6 HOH A 37 637 19 HOH HOH . F 6 HOH A 38 638 25 HOH HOH . F 6 HOH A 39 639 59 HOH HOH . F 6 HOH A 40 640 12 HOH HOH . F 6 HOH A 41 641 38 HOH HOH . F 6 HOH A 42 642 60 HOH HOH . F 6 HOH A 43 643 21 HOH HOH . F 6 HOH A 44 644 54 HOH HOH . F 6 HOH A 45 645 6 HOH HOH . F 6 HOH A 46 646 27 HOH HOH . F 6 HOH A 47 647 32 HOH HOH . F 6 HOH A 48 648 31 HOH HOH . F 6 HOH A 49 649 9 HOH HOH . F 6 HOH A 50 650 13 HOH HOH . F 6 HOH A 51 651 50 HOH HOH . F 6 HOH A 52 652 63 HOH HOH . F 6 HOH A 53 653 64 HOH HOH . F 6 HOH A 54 654 66 HOH HOH . F 6 HOH A 55 655 30 HOH HOH . F 6 HOH A 56 656 65 HOH HOH . F 6 HOH A 57 657 11 HOH HOH . F 6 HOH A 58 658 10 HOH HOH . F 6 HOH A 59 659 23 HOH HOH . F 6 HOH A 60 660 28 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 7.24 _atom_site.Cartn_y 193.084 _atom_site.Cartn_z 11.696 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 55.54 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #