data_8JIP
#
_model_server_result.job_id            X1sfTzOe-W8WJaDbbBUxYw 
_model_server_result.datetime_utc      '2024-11-24 14:19:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jip 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":101}' 
#
_entry.id    8JIP 
#
_exptl.entry_id    8JIP 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              385.538 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-hexadecanoyl-L-glutamic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8JIP 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JIP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 R CYS 46 1_555 A SG CYS 48 R CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 39 R CYS 62 1_555 A SG CYS 81 R CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf3 A SG CYS 62 R CYS 85 1_555 A SG CYS 103 R CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 A SG CYS 203 R CYS 226 1_555 A SG CYS 273 R CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf5 F SG CYS 24 N CYS 22 1_555 F SG CYS 98 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 F SG CYS 101 N CYS 99 1_555 F SG CYS 109 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
#
_chem_comp.formula           'C21 H39 N O5' 
_chem_comp.formula_weight    385.538 
_chem_comp.id                D6M 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-hexadecanoyl-L-glutamic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O01 C02 D6M doub 83 n n 
C02 N03 D6M sing 84 n n 
C02 C12 D6M sing 85 n n 
N03 C04 D6M sing 86 n n 
C04 C05 D6M sing 87 n n 
C04 C09 D6M sing 88 n n 
C05 C06 D6M sing 89 n n 
C06 C07 D6M sing 90 n n 
C07 O08 D6M doub 91 n n 
C07 OXT D6M sing 92 n n 
C09 O10 D6M doub 93 n n 
C09 O11 D6M sing 94 n n 
C12 C13 D6M sing 95 n n 
C13 C14 D6M sing 96 n n 
C14 C15 D6M sing 97 n n 
C15 C16 D6M sing 98 n n 
C16 C17 D6M sing 99 n n 
C17 C18 D6M sing 100 n n 
C18 C19 D6M sing 101 n n 
C19 C20 D6M sing 102 n n 
C20 C21 D6M sing 103 n n 
C21 C22 D6M sing 104 n n 
C22 C23 D6M sing 105 n n 
C23 C24 D6M sing 106 n n 
C24 C25 D6M sing 107 n n 
C25 C26 D6M sing 108 n n 
N03 H03 D6M sing 109 n n 
C12 H121 D6M sing 110 n n 
C12 H122 D6M sing 111 n n 
C04 H04 D6M sing 112 n n 
C05 H051 D6M sing 113 n n 
C05 H052 D6M sing 114 n n 
C06 H061 D6M sing 115 n n 
C06 H062 D6M sing 116 n n 
OXT HX0 D6M sing 117 n n 
O11 H11 D6M sing 118 n n 
C13 H131 D6M sing 119 n n 
C13 H132 D6M sing 120 n n 
C14 H141 D6M sing 121 n n 
C14 H142 D6M sing 122 n n 
C15 H151 D6M sing 123 n n 
C15 H152 D6M sing 124 n n 
C16 H161 D6M sing 125 n n 
C16 H162 D6M sing 126 n n 
C17 H171 D6M sing 127 n n 
C17 H172 D6M sing 128 n n 
C18 H181 D6M sing 129 n n 
C18 H182 D6M sing 130 n n 
C19 H191 D6M sing 131 n n 
C19 H192 D6M sing 132 n n 
C20 H201 D6M sing 133 n n 
C20 H202 D6M sing 134 n n 
C21 H211 D6M sing 135 n n 
C21 H212 D6M sing 136 n n 
C22 H221 D6M sing 137 n n 
C22 H222 D6M sing 138 n n 
C23 H231 D6M sing 139 n n 
C23 H232 D6M sing 140 n n 
C24 H241 D6M sing 141 n n 
C24 H242 D6M sing 142 n n 
C25 H251 D6M sing 143 n n 
C25 H252 D6M sing 144 n n 
C26 H261 D6M sing 145 n n 
C26 H262 D6M sing 146 n n 
C26 H263 D6M sing 147 n n 
#
_atom_sites.entry_id                     8JIP 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          G 
_pdbx_nonpoly_scheme.entity_id        7 
_pdbx_nonpoly_scheme.mon_id           D6M 
_pdbx_nonpoly_scheme.pdb_strand_id    P 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      101 
_pdbx_nonpoly_scheme.auth_seq_num     1 
_pdbx_nonpoly_scheme.pdb_mon_id       D6M 
_pdbx_nonpoly_scheme.auth_mon_id      PL1 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O01 D6M . . . G 7 109.472 120.47 160.289 1 30 ? O01 D6M 101 P 1 
HETATM 2 C C02 D6M . . . G 7 109.227 121.194 161.242 1 30 ? C02 D6M 101 P 1 
HETATM 3 N N03 D6M . . . G 7 110.076 121.381 162.25 1 30 ? N03 D6M 101 P 1 
HETATM 4 C C04 D6M . . . G 7 111.422 120.82 162.257 1 30 ? C04 D6M 101 P 1 
HETATM 5 C C05 D6M . . . G 7 112.172 121.211 163.519 1 30 ? C05 D6M 101 P 1 
HETATM 6 C C06 D6M . . . G 7 112.446 122.704 163.633 1 30 ? C06 D6M 101 P 1 
HETATM 7 C C07 D6M . . . G 7 113.836 122.869 164.25 1 30 ? C07 D6M 101 P 1 
HETATM 8 O O08 D6M . . . G 7 113.826 122.505 165.473 1 30 ? O08 D6M 101 P 1 
HETATM 9 C C09 D6M . . . G 7 111.46 119.323 162.195 1 30 ? C09 D6M 101 P 1 
HETATM 10 O O10 D6M . . . G 7 110.541 118.69 162.755 1 30 ? O10 D6M 101 P 1 
HETATM 11 O O11 D6M . . . G 7 112.398 118.77 161.58 1 30 -1 O11 D6M 101 P 1 
HETATM 12 C C12 D6M . . . G 7 107.946 122.008 161.254 1 30 ? C12 D6M 101 P 1 
HETATM 13 C C13 D6M . . . G 7 107.009 121.713 160.071 1 30 ? C13 D6M 101 P 1 
HETATM 14 C C14 D6M . . . G 7 107.417 122.357 158.736 1 30 ? C14 D6M 101 P 1 
HETATM 15 C C15 D6M . . . G 7 107.295 121.394 157.552 1 30 ? C15 D6M 101 P 1 
HETATM 16 C C16 D6M . . . G 7 107.287 122.099 156.193 1 30 ? C16 D6M 101 P 1 
HETATM 17 C C17 D6M . . . G 7 107.524 121.091 155.061 1 30 ? C17 D6M 101 P 1 
HETATM 18 C C18 D6M . . . G 7 107.102 121.556 153.658 1 30 ? C18 D6M 101 P 1 
HETATM 19 C C19 D6M . . . G 7 106.104 120.585 153.013 1 30 ? C19 D6M 101 P 1 
HETATM 20 C C20 D6M . . . G 7 105.663 120.956 151.589 1 30 ? C20 D6M 101 P 1 
HETATM 21 C C21 D6M . . . G 7 106.724 120.698 150.524 1 30 ? C21 D6M 101 P 1 
HETATM 22 C C22 D6M . . . G 7 106.07 120.533 149.157 1 30 ? C22 D6M 101 P 1 
HETATM 23 C C23 D6M . . . G 7 107.123 120.52 148.061 1 30 ? C23 D6M 101 P 1 
HETATM 24 C C24 D6M . . . G 7 106.525 120.315 146.675 1 30 ? C24 D6M 101 P 1 
HETATM 25 C C25 D6M . . . G 7 107.647 120.03 145.679 1 30 ? C25 D6M 101 P 1 
HETATM 26 C C26 D6M . . . G 7 107.261 120.217 144.229 1 30 ? C26 D6M 101 P 1 
HETATM 27 H H03 D6M . . . G 7 109.8 121.99 163.006 1 30 ? H03 D6M 101 P 1 
HETATM 28 H H121 D6M . . . G 7 107.408 121.806 162.181 1 30 ? H121 D6M 101 P 1 
HETATM 29 H H122 D6M . . . G 7 108.202 123.07 161.251 1 30 ? H122 D6M 101 P 1 
HETATM 30 H H04 D6M . . . G 7 111.975 121.209 161.393 1 30 ? H04 D6M 101 P 1 
HETATM 31 H H051 D6M . . . G 7 113.124 120.677 163.53 1 30 ? H051 D6M 101 P 1 
HETATM 32 H H052 D6M . . . G 7 111.605 120.882 164.392 1 30 ? H052 D6M 101 P 1 
HETATM 33 H H061 D6M . . . G 7 112.398 123.193 162.656 1 30 ? H061 D6M 101 P 1 
HETATM 34 H H062 D6M . . . G 7 111.7 123.169 164.28 1 30 ? H062 D6M 101 P 1 
HETATM 35 H H131 D6M . . . G 7 106.025 122.107 160.33 1 30 ? H131 D6M 101 P 1 
HETATM 36 H H132 D6M . . . G 7 106.881 120.635 159.96 1 30 ? H132 D6M 101 P 1 
HETATM 37 H H141 D6M . . . G 7 106.771 123.217 158.556 1 30 ? H141 D6M 101 P 1 
HETATM 38 H H142 D6M . . . G 7 108.442 122.726 158.795 1 30 ? H142 D6M 101 P 1 
HETATM 39 H H151 D6M . . . G 7 108.125 120.686 157.589 1 30 ? H151 D6M 101 P 1 
HETATM 40 H H152 D6M . . . G 7 106.366 120.826 157.642 1 30 ? H152 D6M 101 P 1 
HETATM 41 H H161 D6M . . . G 7 106.321 122.591 156.064 1 30 ? H161 D6M 101 P 1 
HETATM 42 H H162 D6M . . . G 7 108.064 122.867 156.171 1 30 ? H162 D6M 101 P 1 
HETATM 43 H H171 D6M . . . G 7 108.588 120.851 155.035 1 30 ? H171 D6M 101 P 1 
HETATM 44 H H172 D6M . . . G 7 107.002 120.166 155.312 1 30 ? H172 D6M 101 P 1 
HETATM 45 H H181 D6M . . . G 7 107.994 121.62 153.032 1 30 ? H181 D6M 101 P 1 
HETATM 46 H H182 D6M . . . G 7 106.67 122.557 153.699 1 30 ? H182 D6M 101 P 1 
HETATM 47 H H191 D6M . . . G 7 106.529 119.58 153.008 1 30 ? H191 D6M 101 P 1 
HETATM 48 H H192 D6M . . . G 7 105.21 120.55 153.638 1 30 ? H192 D6M 101 P 1 
HETATM 49 H H201 D6M . . . G 7 105.402 122.016 151.565 1 30 ? H201 D6M 101 P 1 
HETATM 50 H H202 D6M . . . G 7 104.759 120.394 151.349 1 30 ? H202 D6M 101 P 1 
HETATM 51 H H211 D6M . . . G 7 107.42 121.54 150.504 1 30 ? H211 D6M 101 P 1 
HETATM 52 H H212 D6M . . . G 7 107.297 119.8 150.759 1 30 ? H212 D6M 101 P 1 
HETATM 53 H H221 D6M . . . G 7 105.371 121.352 148.98 1 30 ? H221 D6M 101 P 1 
HETATM 54 H H222 D6M . . . G 7 105.512 119.596 149.133 1 30 ? H222 D6M 101 P 1 
HETATM 55 H H231 D6M . . . G 7 107.827 119.714 148.267 1 30 ? H231 D6M 101 P 1 
HETATM 56 H H232 D6M . . . G 7 107.67 121.465 148.078 1 30 ? H232 D6M 101 P 1 
HETATM 57 H H241 D6M . . . G 7 105.826 119.478 146.68 1 30 ? H241 D6M 101 P 1 
HETATM 58 H H242 D6M . . . G 7 105.974 121.216 146.401 1 30 ? H242 D6M 101 P 1 
HETATM 59 H H251 D6M . . . G 7 108.005 119.008 145.821 1 30 ? H251 D6M 101 P 1 
HETATM 60 H H252 D6M . . . G 7 108.475 120.694 145.895 1 30 ? H252 D6M 101 P 1 
HETATM 61 H H261 D6M . . . G 7 108.117 120.537 143.693 1 30 ? H261 D6M 101 P 1 
HETATM 62 H H262 D6M . . . G 7 106.922 119.295 143.838 1 30 ? H262 D6M 101 P 1 
HETATM 63 H H263 D6M . . . G 7 106.5 120.943 144.129 1 30 ? H263 D6M 101 P 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           63 
#