data_8JIR # _model_server_result.job_id S3aN3Uvbg6s4eUNUjB4IYw _model_server_result.datetime_utc '2024-12-21 16:06:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jir # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":101}' # _entry.id 8JIR # _exptl.entry_id 8JIR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 385.538 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-hexadecanoyl-L-glutamic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JIR _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JIR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 24 N CYS 22 1_555 E SG CYS 98 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 F SG CYS 23 R CYS 46 1_555 F SG CYS 48 R CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 F SG CYS 39 R CYS 62 1_555 F SG CYS 81 R CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 F SG CYS 62 R CYS 85 1_555 F SG CYS 103 R CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 F SG CYS 203 R CYS 226 1_555 F SG CYS 273 R CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? covale ? covale1 B NZ LYS 14 P LYS 14 1_555 G C07 D6M . P D6M 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.527 ? # _chem_comp.formula 'C21 H39 N O5' _chem_comp.formula_weight 385.538 _chem_comp.id D6M _chem_comp.mon_nstd_flag . _chem_comp.name 'N-hexadecanoyl-L-glutamic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C02 D6M doub 83 n n C02 N03 D6M sing 84 n n C02 C12 D6M sing 85 n n N03 C04 D6M sing 86 n n C04 C05 D6M sing 87 n n C04 C09 D6M sing 88 n n C05 C06 D6M sing 89 n n C06 C07 D6M sing 90 n n C07 O08 D6M doub 91 n n C07 OXT D6M sing 92 n n C09 O10 D6M doub 93 n n C09 O11 D6M sing 94 n n C12 C13 D6M sing 95 n n C13 C14 D6M sing 96 n n C14 C15 D6M sing 97 n n C15 C16 D6M sing 98 n n C16 C17 D6M sing 99 n n C17 C18 D6M sing 100 n n C18 C19 D6M sing 101 n n C19 C20 D6M sing 102 n n C20 C21 D6M sing 103 n n C21 C22 D6M sing 104 n n C22 C23 D6M sing 105 n n C23 C24 D6M sing 106 n n C24 C25 D6M sing 107 n n C25 C26 D6M sing 108 n n N03 H03 D6M sing 109 n n C12 H121 D6M sing 110 n n C12 H122 D6M sing 111 n n C04 H04 D6M sing 112 n n C05 H051 D6M sing 113 n n C05 H052 D6M sing 114 n n C06 H061 D6M sing 115 n n C06 H062 D6M sing 116 n n OXT HX0 D6M sing 117 n n O11 H11 D6M sing 118 n n C13 H131 D6M sing 119 n n C13 H132 D6M sing 120 n n C14 H141 D6M sing 121 n n C14 H142 D6M sing 122 n n C15 H151 D6M sing 123 n n C15 H152 D6M sing 124 n n C16 H161 D6M sing 125 n n C16 H162 D6M sing 126 n n C17 H171 D6M sing 127 n n C17 H172 D6M sing 128 n n C18 H181 D6M sing 129 n n C18 H182 D6M sing 130 n n C19 H191 D6M sing 131 n n C19 H192 D6M sing 132 n n C20 H201 D6M sing 133 n n C20 H202 D6M sing 134 n n C21 H211 D6M sing 135 n n C21 H212 D6M sing 136 n n C22 H221 D6M sing 137 n n C22 H222 D6M sing 138 n n C23 H231 D6M sing 139 n n C23 H232 D6M sing 140 n n C24 H241 D6M sing 141 n n C24 H242 D6M sing 142 n n C25 H251 D6M sing 143 n n C25 H252 D6M sing 144 n n C26 H261 D6M sing 145 n n C26 H262 D6M sing 146 n n C26 H263 D6M sing 147 n n # _atom_sites.entry_id 8JIR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id G _pdbx_nonpoly_scheme.entity_id 7 _pdbx_nonpoly_scheme.mon_id D6M _pdbx_nonpoly_scheme.pdb_strand_id P _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id D6M _pdbx_nonpoly_scheme.auth_mon_id PL1 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 D6M . . . G 7 151.843 143.31 178.18 1 30 ? O01 D6M 101 P 1 HETATM 2 C C02 D6M . . . G 7 152.27 144.374 177.771 1 30 ? C02 D6M 101 P 1 HETATM 3 N N03 D6M . . . G 7 151.937 145.566 178.279 1 30 ? N03 D6M 101 P 1 HETATM 4 C C04 D6M . . . G 7 151.219 145.769 179.537 1 30 ? C04 D6M 101 P 1 HETATM 5 C C05 D6M . . . G 7 149.761 145.276 179.563 1 30 ? C05 D6M 101 P 1 HETATM 6 C C06 D6M . . . G 7 148.98 145.815 180.769 1 30 ? C06 D6M 101 P 1 HETATM 7 C C07 D6M . . . G 7 148.24 144.668 181.522 1 30 ? C07 D6M 101 P 1 HETATM 8 O O08 D6M . . . G 7 149.048 144.244 182.443 1 30 ? O08 D6M 101 P 1 HETATM 9 C C09 D6M . . . G 7 152.049 145.203 180.663 1 30 ? C09 D6M 101 P 1 HETATM 10 O O10 D6M . . . G 7 153.001 145.897 181.073 1 30 ? O10 D6M 101 P 1 HETATM 11 O O11 D6M . . . G 7 151.789 144.085 181.153 1 30 ? O11 D6M 101 P 1 HETATM 12 C C12 D6M . . . G 7 153.305 144.331 176.669 1 30 ? C12 D6M 101 P 1 HETATM 13 C C13 D6M . . . G 7 152.623 144.218 175.315 1 30 ? C13 D6M 101 P 1 HETATM 14 C C14 D6M . . . G 7 153.607 144.095 174.151 1 30 ? C14 D6M 101 P 1 HETATM 15 C C15 D6M . . . G 7 154.113 145.435 173.626 1 30 ? C15 D6M 101 P 1 HETATM 16 C C16 D6M . . . G 7 153.302 145.951 172.441 1 30 ? C16 D6M 101 P 1 HETATM 17 C C17 D6M . . . G 7 153.678 145.368 171.074 1 30 ? C17 D6M 101 P 1 HETATM 18 C C18 D6M . . . G 7 153.46 146.41 169.982 1 30 ? C18 D6M 101 P 1 HETATM 19 C C19 D6M . . . G 7 153.751 145.896 168.574 1 30 ? C19 D6M 101 P 1 HETATM 20 C C20 D6M . . . G 7 153.982 147.084 167.642 1 30 ? C20 D6M 101 P 1 HETATM 21 C C21 D6M . . . G 7 153.906 146.724 166.163 1 30 ? C21 D6M 101 P 1 HETATM 22 C C22 D6M . . . G 7 154.089 147.967 165.287 1 30 ? C22 D6M 101 P 1 HETATM 23 C C23 D6M . . . G 7 154.572 147.554 163.93 1 30 ? C23 D6M 101 P 1 HETATM 24 C C24 D6M . . . G 7 154.364 148.778 163.087 1 30 ? C24 D6M 101 P 1 HETATM 25 C C25 D6M . . . G 7 155.127 148.633 161.8 1 30 ? C25 D6M 101 P 1 HETATM 26 C C26 D6M . . . G 7 154.257 149.266 160.772 1 30 ? C26 D6M 101 P 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #