data_8JKV # _model_server_result.job_id j68VulVM8vOl074CZDHSIQ _model_server_result.datetime_utc '2024-11-12 22:17:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jkv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"UA","auth_seq_id":806}' # _entry.id 8JKV # _exptl.entry_id 8JKV _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 198.388 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TETRADECANE _entity.pdbx_number_of_molecules 24 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JKV _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JKV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 L N N ? 6 M N N ? 6 N N N ? 6 O N N ? 6 Q N N ? 6 U N N ? 6 V N N ? 6 DA N N ? 6 EA N N ? 6 FA N N ? 6 GA N N ? 6 UA N N ? 6 VA N N ? 6 WA N N ? 6 XA N N ? 6 YA N N ? 6 AB N N ? 6 EB N N ? 6 FB N N ? 6 MB N N ? 6 NB N N ? 6 OB N N ? 6 PB N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 801 NAG 2 n C NAG 2 C 2 NAG A 802 NAG 2 n D NAG 1 D 1 NAG A 803 NAG 2 n D NAG 2 D 2 NAG A 804 NAG 2 n E NAG 1 E 1 NAG B 801 NAG 2 n E NAG 2 E 2 NAG B 802 NAG 2 n F NAG 1 F 1 NAG B 803 NAG 2 n F NAG 2 F 2 NAG B 804 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 104 1_555 A SG CYS 107 A CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 151 A CYS 151 1_555 A SG CYS 179 A CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 443 A CYS 443 1_555 A SG CYS 462 A CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 B SG CYS 104 B CYS 104 1_555 B SG CYS 107 B CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 B SG CYS 151 B CYS 151 1_555 B SG CYS 179 B CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 B SG CYS 443 B CYS 443 1_555 B SG CYS 462 B CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 94 A ASN 94 1_555 G C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 142 A ASN 142 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A ND2 ASN 162 A ASN 162 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 B ND2 ASN 94 B ASN 94 1_555 QA C1 NAG . B NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 B ND2 ASN 142 B ASN 142 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 B ND2 ASN 162 B ASN 162 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale9 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale10 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C14 H30' _chem_comp.formula_weight 198.388 _chem_comp.id C14 _chem_comp.mon_nstd_flag . _chem_comp.name TETRADECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 C14 sing 70 n n C01 H011 C14 sing 71 n n C01 H012 C14 sing 72 n n C01 H013 C14 sing 73 n n C02 C03 C14 sing 74 n n C02 H021 C14 sing 75 n n C02 H022 C14 sing 76 n n C03 C04 C14 sing 77 n n C03 H031 C14 sing 78 n n C03 H032 C14 sing 79 n n C04 C05 C14 sing 80 n n C04 H041 C14 sing 81 n n C04 H042 C14 sing 82 n n C05 C06 C14 sing 83 n n C05 H051 C14 sing 84 n n C05 H052 C14 sing 85 n n C06 C07 C14 sing 86 n n C06 H061 C14 sing 87 n n C06 H062 C14 sing 88 n n C07 C08 C14 sing 89 n n C07 H071 C14 sing 90 n n C07 H072 C14 sing 91 n n C08 C09 C14 sing 92 n n C08 H081 C14 sing 93 n n C08 H082 C14 sing 94 n n C09 C10 C14 sing 95 n n C09 H091 C14 sing 96 n n C09 H092 C14 sing 97 n n C10 C11 C14 sing 98 n n C10 H101 C14 sing 99 n n C10 H102 C14 sing 100 n n C11 C12 C14 sing 101 n n C11 H111 C14 sing 102 n n C11 H112 C14 sing 103 n n C12 C13 C14 sing 104 n n C12 H121 C14 sing 105 n n C12 H122 C14 sing 106 n n C13 C14 C14 sing 107 n n C13 H131 C14 sing 108 n n C13 H132 C14 sing 109 n n C14 H141 C14 sing 110 n n C14 H142 C14 sing 111 n n C14 H143 C14 sing 112 n n # _atom_sites.entry_id 8JKV _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 NAG A 1 801 800 NAG NAG . H 4 D12 A 1 802 901 D12 D12 . I 5 OCT A 1 803 902 OCT OCT . J 5 OCT A 1 804 904 OCT OCT . K 6 C14 A 1 805 906 C14 C14 . L 6 C14 A 1 806 907 C14 C14 . M 6 C14 A 1 807 908 C14 C14 . N 6 C14 A 1 808 909 C14 C14 . O 6 C14 A 1 809 910 C14 C14 . P 5 OCT A 1 810 911 OCT OCT . Q 6 C14 A 1 811 912 C14 C14 . R 5 OCT A 1 812 913 OCT OCT . S 7 CLR A 1 813 914 CLR CLR . T 5 OCT A 1 814 915 OCT OCT . U 6 C14 A 1 815 916 C14 C14 . V 6 C14 A 1 816 917 C14 C14 . W 5 OCT A 1 817 918 OCT OCT . X 8 D10 A 1 818 919 D10 D10 . Y 4 D12 A 1 819 920 D12 D12 . Z 5 OCT A 1 820 921 OCT OCT . AA 5 OCT A 1 821 922 OCT OCT . BA 5 OCT A 1 822 927 OCT OCT . CA 5 OCT A 1 823 928 OCT OCT . DA 6 C14 A 1 824 929 C14 C14 . EA 6 C14 A 1 825 932 C14 C14 . FA 6 C14 A 1 826 933 C14 C14 . GA 6 C14 A 1 827 934 C14 C14 . HA 5 OCT A 1 828 936 OCT OCT . IA 5 OCT A 1 829 937 OCT OCT . JA 9 R16 A 1 830 938 R16 R16 . KA 5 OCT A 1 831 939 OCT OCT . LA 5 OCT A 1 832 941 OCT OCT . MA 5 OCT A 1 833 942 OCT OCT . NA 5 OCT A 1 834 921 OCT OCT . OA 4 D12 A 1 835 926 D12 D12 . PA 4 D12 B 1 801 926 D12 D12 . QA 3 NAG B 1 802 800 NAG NAG . RA 4 D12 B 1 803 901 D12 D12 . SA 5 OCT B 1 804 902 OCT OCT . TA 5 OCT B 1 805 904 OCT OCT . UA 6 C14 B 1 806 906 C14 C14 . VA 6 C14 B 1 807 907 C14 C14 . WA 6 C14 B 1 808 908 C14 C14 . XA 6 C14 B 1 809 909 C14 C14 . YA 6 C14 B 1 810 910 C14 C14 . ZA 5 OCT B 1 811 911 OCT OCT . AB 6 C14 B 1 812 912 C14 C14 . BB 5 OCT B 1 813 913 OCT OCT . CB 7 CLR B 1 814 914 CLR CLR . DB 5 OCT B 1 815 915 OCT OCT . EB 6 C14 B 1 816 916 C14 C14 . FB 6 C14 B 1 817 917 C14 C14 . GB 5 OCT B 1 818 918 OCT OCT . HB 8 D10 B 1 819 919 D10 D10 . IB 4 D12 B 1 820 920 D12 D12 . JB 5 OCT B 1 821 922 OCT OCT . KB 5 OCT B 1 822 927 OCT OCT . LB 5 OCT B 1 823 928 OCT OCT . MB 6 C14 B 1 824 929 C14 C14 . NB 6 C14 B 1 825 932 C14 C14 . OB 6 C14 B 1 826 933 C14 C14 . PB 6 C14 B 1 827 934 C14 C14 . QB 5 OCT B 1 828 936 OCT OCT . RB 5 OCT B 1 829 937 OCT OCT . SB 9 R16 B 1 830 938 R16 R16 . TB 5 OCT B 1 831 939 OCT OCT . UB 5 OCT B 1 832 941 OCT OCT . VB 5 OCT B 1 833 942 OCT OCT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C03 C14 . . . UA 6 157.434 143.674 167.186 1 34.86 ? C03 C14 806 B 1 HETATM 2 C C04 C14 . . . UA 6 156.863 142.564 166.311 1 35.41 ? C04 C14 806 B 1 HETATM 3 C C05 C14 . . . UA 6 156.234 143.068 165.018 1 34.73 ? C05 C14 806 B 1 HETATM 4 C C06 C14 . . . UA 6 155.427 142.006 164.282 1 38.11 ? C06 C14 806 B 1 HETATM 5 C C07 C14 . . . UA 6 154.387 142.594 163.336 1 36.03 ? C07 C14 806 B 1 HETATM 6 C C08 C14 . . . UA 6 153.499 141.552 162.667 1 35.2 ? C08 C14 806 B 1 HETATM 7 C C09 C14 . . . UA 6 154.085 140.974 161.389 1 30.77 ? C09 C14 806 B 1 HETATM 8 C C10 C14 . . . UA 6 153.373 139.708 160.942 1 30.31 ? C10 C14 806 B 1 HETATM 9 C C11 C14 . . . UA 6 153.832 139.191 159.586 1 30.64 ? C11 C14 806 B 1 HETATM 10 C C12 C14 . . . UA 6 152.835 138.222 158.966 1 30.71 ? C12 C14 806 B 1 HETATM 11 C C13 C14 . . . UA 6 153.199 137.791 157.554 1 34.17 ? C13 C14 806 B 1 HETATM 12 C C14 C14 . . . UA 6 152.063 137.099 156.816 1 31.14 ? C14 C14 806 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 12 #