data_8JKV # _model_server_result.job_id gPR1pNbhYuassEQY17xjfA _model_server_result.datetime_utc '2024-11-12 22:20:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jkv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"SB","auth_seq_id":830}' # _entry.id 8JKV # _exptl.entry_id 8JKV _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 226.441 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEXADECANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JKV _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JKV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 JA N N ? 9 SB N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 801 NAG 2 n C NAG 2 C 2 NAG A 802 NAG 2 n D NAG 1 D 1 NAG A 803 NAG 2 n D NAG 2 D 2 NAG A 804 NAG 2 n E NAG 1 E 1 NAG B 801 NAG 2 n E NAG 2 E 2 NAG B 802 NAG 2 n F NAG 1 F 1 NAG B 803 NAG 2 n F NAG 2 F 2 NAG B 804 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 104 1_555 A SG CYS 107 A CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 151 A CYS 151 1_555 A SG CYS 179 A CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 443 A CYS 443 1_555 A SG CYS 462 A CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 B SG CYS 104 B CYS 104 1_555 B SG CYS 107 B CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 B SG CYS 151 B CYS 151 1_555 B SG CYS 179 B CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 B SG CYS 443 B CYS 443 1_555 B SG CYS 462 B CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 94 A ASN 94 1_555 G C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 142 A ASN 142 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A ND2 ASN 162 A ASN 162 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 B ND2 ASN 94 B ASN 94 1_555 QA C1 NAG . B NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 B ND2 ASN 142 B ASN 142 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 B ND2 ASN 162 B ASN 162 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale9 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale10 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C16 H34' _chem_comp.formula_weight 226.441 _chem_comp.id R16 _chem_comp.mon_nstd_flag . _chem_comp.name HEXADECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C28 R16 sing 518 n n C27 H271 R16 sing 519 n n C27 H272 R16 sing 520 n n C27 H273 R16 sing 521 n n C28 C29 R16 sing 522 n n C28 H281 R16 sing 523 n n C28 H282 R16 sing 524 n n C29 C30 R16 sing 525 n n C29 H291 R16 sing 526 n n C29 H292 R16 sing 527 n n C30 C31 R16 sing 528 n n C30 H301 R16 sing 529 n n C30 H302 R16 sing 530 n n C31 C32 R16 sing 531 n n C31 H311 R16 sing 532 n n C31 H312 R16 sing 533 n n C32 C33 R16 sing 534 n n C32 H321 R16 sing 535 n n C32 H322 R16 sing 536 n n C33 C34 R16 sing 537 n n C33 H331 R16 sing 538 n n C33 H332 R16 sing 539 n n C34 C35 R16 sing 540 n n C34 H341 R16 sing 541 n n C34 H342 R16 sing 542 n n C35 C36 R16 sing 543 n n C35 H351 R16 sing 544 n n C35 H352 R16 sing 545 n n C36 C37 R16 sing 546 n n C36 H361 R16 sing 547 n n C36 H362 R16 sing 548 n n C37 C38 R16 sing 549 n n C37 H371 R16 sing 550 n n C37 H372 R16 sing 551 n n C38 C39 R16 sing 552 n n C38 H381 R16 sing 553 n n C38 H382 R16 sing 554 n n C39 C40 R16 sing 555 n n C39 H391 R16 sing 556 n n C39 H392 R16 sing 557 n n C40 C41 R16 sing 558 n n C40 H401 R16 sing 559 n n C40 H402 R16 sing 560 n n C41 C42 R16 sing 561 n n C41 H411 R16 sing 562 n n C41 H412 R16 sing 563 n n C42 H421 R16 sing 564 n n C42 H422 R16 sing 565 n n C42 H423 R16 sing 566 n n # _atom_sites.entry_id 8JKV _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 NAG A 1 801 800 NAG NAG . H 4 D12 A 1 802 901 D12 D12 . I 5 OCT A 1 803 902 OCT OCT . J 5 OCT A 1 804 904 OCT OCT . K 6 C14 A 1 805 906 C14 C14 . L 6 C14 A 1 806 907 C14 C14 . M 6 C14 A 1 807 908 C14 C14 . N 6 C14 A 1 808 909 C14 C14 . O 6 C14 A 1 809 910 C14 C14 . P 5 OCT A 1 810 911 OCT OCT . Q 6 C14 A 1 811 912 C14 C14 . R 5 OCT A 1 812 913 OCT OCT . S 7 CLR A 1 813 914 CLR CLR . T 5 OCT A 1 814 915 OCT OCT . U 6 C14 A 1 815 916 C14 C14 . V 6 C14 A 1 816 917 C14 C14 . W 5 OCT A 1 817 918 OCT OCT . X 8 D10 A 1 818 919 D10 D10 . Y 4 D12 A 1 819 920 D12 D12 . Z 5 OCT A 1 820 921 OCT OCT . AA 5 OCT A 1 821 922 OCT OCT . BA 5 OCT A 1 822 927 OCT OCT . CA 5 OCT A 1 823 928 OCT OCT . DA 6 C14 A 1 824 929 C14 C14 . EA 6 C14 A 1 825 932 C14 C14 . FA 6 C14 A 1 826 933 C14 C14 . GA 6 C14 A 1 827 934 C14 C14 . HA 5 OCT A 1 828 936 OCT OCT . IA 5 OCT A 1 829 937 OCT OCT . JA 9 R16 A 1 830 938 R16 R16 . KA 5 OCT A 1 831 939 OCT OCT . LA 5 OCT A 1 832 941 OCT OCT . MA 5 OCT A 1 833 942 OCT OCT . NA 5 OCT A 1 834 921 OCT OCT . OA 4 D12 A 1 835 926 D12 D12 . PA 4 D12 B 1 801 926 D12 D12 . QA 3 NAG B 1 802 800 NAG NAG . RA 4 D12 B 1 803 901 D12 D12 . SA 5 OCT B 1 804 902 OCT OCT . TA 5 OCT B 1 805 904 OCT OCT . UA 6 C14 B 1 806 906 C14 C14 . VA 6 C14 B 1 807 907 C14 C14 . WA 6 C14 B 1 808 908 C14 C14 . XA 6 C14 B 1 809 909 C14 C14 . YA 6 C14 B 1 810 910 C14 C14 . ZA 5 OCT B 1 811 911 OCT OCT . AB 6 C14 B 1 812 912 C14 C14 . BB 5 OCT B 1 813 913 OCT OCT . CB 7 CLR B 1 814 914 CLR CLR . DB 5 OCT B 1 815 915 OCT OCT . EB 6 C14 B 1 816 916 C14 C14 . FB 6 C14 B 1 817 917 C14 C14 . GB 5 OCT B 1 818 918 OCT OCT . HB 8 D10 B 1 819 919 D10 D10 . IB 4 D12 B 1 820 920 D12 D12 . JB 5 OCT B 1 821 922 OCT OCT . KB 5 OCT B 1 822 927 OCT OCT . LB 5 OCT B 1 823 928 OCT OCT . MB 6 C14 B 1 824 929 C14 C14 . NB 6 C14 B 1 825 932 C14 C14 . OB 6 C14 B 1 826 933 C14 C14 . PB 6 C14 B 1 827 934 C14 C14 . QB 5 OCT B 1 828 936 OCT OCT . RB 5 OCT B 1 829 937 OCT OCT . SB 9 R16 B 1 830 938 R16 R16 . TB 5 OCT B 1 831 939 OCT OCT . UB 5 OCT B 1 832 941 OCT OCT . VB 5 OCT B 1 833 942 OCT OCT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 R16 . . . SB 9 149.115 149.808 167.8 1 25.4 ? C27 R16 830 B 1 HETATM 2 C C28 R16 . . . SB 9 150.391 148.986 167.713 1 29.24 ? C28 R16 830 B 1 HETATM 3 C C29 R16 . . . SB 9 151.481 149.502 168.64 1 30.88 ? C29 R16 830 B 1 HETATM 4 C C30 R16 . . . SB 9 152.095 148.434 169.534 1 32.07 ? C30 R16 830 B 1 HETATM 5 C C31 R16 . . . SB 9 152.564 148.968 170.883 1 27.22 ? C31 R16 830 B 1 HETATM 6 C C32 R16 . . . SB 9 152.635 147.891 171.957 1 29.46 ? C32 R16 830 B 1 HETATM 7 C C33 R16 . . . SB 9 153.54 148.241 173.13 1 30 ? C33 R16 830 B 1 HETATM 8 C C34 R16 . . . SB 9 154.416 147.082 173.59 1 31.7 ? C34 R16 830 B 1 HETATM 9 C C35 R16 . . . SB 9 155.33 147.445 174.751 1 28.45 ? C35 R16 830 B 1 HETATM 10 C C36 R16 . . . SB 9 156.709 146.806 174.678 1 29.51 ? C36 R16 830 B 1 HETATM 11 C C37 R16 . . . SB 9 157.738 147.476 175.579 1 28.21 ? C37 R16 830 B 1 HETATM 12 C C38 R16 . . . SB 9 157.417 147.344 177.061 1 26.77 ? C38 R16 830 B 1 HETATM 13 C C39 R16 . . . SB 9 158.321 148.172 177.962 1 27.07 ? C39 R16 830 B 1 HETATM 14 C C40 R16 . . . SB 9 157.802 148.296 179.388 1 30.41 ? C40 R16 830 B 1 HETATM 15 C C41 R16 . . . SB 9 157.84 146.991 180.171 1 29.79 ? C41 R16 830 B 1 HETATM 16 C C42 R16 . . . SB 9 157.476 147.153 181.638 1 25.91 ? C42 R16 830 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 569 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 16 #