data_8JL1 # _model_server_result.job_id lNalcsfCVe-E2JWLMHl4XQ _model_server_result.datetime_utc '2024-10-19 20:21:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jl1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":807}' # _entry.id 8JL1 # _exptl.entry_id 8JL1 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 198.388 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TETRADECANE _entity.pdbx_number_of_molecules 24 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JL1 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JL1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 M N N ? 7 N N N ? 7 O N N ? 7 P N N ? 7 Q N N ? 7 S N N ? 7 W N N ? 7 X N N ? 7 FA N N ? 7 GA N N ? 7 HA N N ? 7 IA N N ? 7 XA N N ? 7 YA N N ? 7 ZA N N ? 7 AB N N ? 7 BB N N ? 7 DB N N ? 7 HB N N ? 7 IB N N ? 7 QB N N ? 7 RB N N ? 7 SB N N ? 7 TB N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 801 NAG 2 n C NAG 2 C 2 NAG A 802 NAG 2 n D NAG 1 D 1 NAG A 803 NAG 2 n D NAG 2 D 2 NAG A 804 NAG 2 n E NAG 1 E 1 NAG B 801 NAG 2 n E NAG 2 E 2 NAG B 802 NAG 2 n F NAG 1 F 1 NAG B 803 NAG 2 n F NAG 2 F 2 NAG B 804 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 104 1_555 A SG CYS 107 A CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 151 A CYS 151 1_555 A SG CYS 179 A CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 443 A CYS 443 1_555 A SG CYS 462 A CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 104 B CYS 104 1_555 B SG CYS 107 B CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 151 B CYS 151 1_555 B SG CYS 179 B CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 B SG CYS 443 B CYS 443 1_555 B SG CYS 462 B CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 94 A ASN 94 1_555 H C1 NAG . A NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 142 A ASN 142 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale3 A ND2 ASN 162 A ASN 162 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 B ND2 ASN 94 B ASN 94 1_555 SA C1 NAG . B NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 B ND2 ASN 142 B ASN 142 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale6 B ND2 ASN 162 B ASN 162 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale9 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale10 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C14 H30' _chem_comp.formula_weight 198.388 _chem_comp.id C14 _chem_comp.mon_nstd_flag . _chem_comp.name TETRADECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 C14 sing 161 n n C01 H011 C14 sing 162 n n C01 H012 C14 sing 163 n n C01 H013 C14 sing 164 n n C02 C03 C14 sing 165 n n C02 H021 C14 sing 166 n n C02 H022 C14 sing 167 n n C03 C04 C14 sing 168 n n C03 H031 C14 sing 169 n n C03 H032 C14 sing 170 n n C04 C05 C14 sing 171 n n C04 H041 C14 sing 172 n n C04 H042 C14 sing 173 n n C05 C06 C14 sing 174 n n C05 H051 C14 sing 175 n n C05 H052 C14 sing 176 n n C06 C07 C14 sing 177 n n C06 H061 C14 sing 178 n n C06 H062 C14 sing 179 n n C07 C08 C14 sing 180 n n C07 H071 C14 sing 181 n n C07 H072 C14 sing 182 n n C08 C09 C14 sing 183 n n C08 H081 C14 sing 184 n n C08 H082 C14 sing 185 n n C09 C10 C14 sing 186 n n C09 H091 C14 sing 187 n n C09 H092 C14 sing 188 n n C10 C11 C14 sing 189 n n C10 H101 C14 sing 190 n n C10 H102 C14 sing 191 n n C11 C12 C14 sing 192 n n C11 H111 C14 sing 193 n n C11 H112 C14 sing 194 n n C12 C13 C14 sing 195 n n C12 H121 C14 sing 196 n n C12 H122 C14 sing 197 n n C13 C14 C14 sing 198 n n C13 H131 C14 sing 199 n n C13 H132 C14 sing 200 n n C14 H141 C14 sing 201 n n C14 H142 C14 sing 202 n n C14 H143 C14 sing 203 n n # _atom_sites.entry_id 8JL1 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 ACO A 1 801 702 ACO ACO . H 4 NAG A 1 802 800 NAG NAG . I 5 D12 A 1 803 901 D12 D12 . J 6 OCT A 1 804 902 OCT OCT . K 6 OCT A 1 805 903 OCT OCT . L 6 OCT A 1 806 904 OCT OCT . M 7 C14 A 1 807 906 C14 C14 . N 7 C14 A 1 808 907 C14 C14 . O 7 C14 A 1 809 908 C14 C14 . P 7 C14 A 1 810 909 C14 C14 . Q 7 C14 A 1 811 910 C14 C14 . R 6 OCT A 1 812 911 OCT OCT . S 7 C14 A 1 813 912 C14 C14 . T 6 OCT A 1 814 913 OCT OCT . U 8 CLR A 1 815 914 CLR CLR . V 6 OCT A 1 816 915 OCT OCT . W 7 C14 A 1 817 916 C14 C14 . X 7 C14 A 1 818 917 C14 C14 . Y 6 OCT A 1 819 918 OCT OCT . Z 9 D10 A 1 820 919 D10 D10 . AA 5 D12 A 1 821 920 D12 D12 . BA 6 OCT A 1 822 921 OCT OCT . CA 6 OCT A 1 823 922 OCT OCT . DA 6 OCT A 1 824 927 OCT OCT . EA 6 OCT A 1 825 928 OCT OCT . FA 7 C14 A 1 826 929 C14 C14 . GA 7 C14 A 1 827 932 C14 C14 . HA 7 C14 A 1 828 933 C14 C14 . IA 7 C14 A 1 829 934 C14 C14 . JA 6 OCT A 1 830 936 OCT OCT . KA 6 OCT A 1 831 937 OCT OCT . LA 10 R16 A 1 832 938 R16 R16 . MA 6 OCT A 1 833 939 OCT OCT . NA 6 OCT A 1 834 941 OCT OCT . OA 6 OCT A 1 835 942 OCT OCT . PA 5 D12 A 1 836 926 D12 D12 . QA 5 D12 B 1 801 926 D12 D12 . RA 3 ACO B 1 802 702 ACO ACO . SA 4 NAG B 1 803 800 NAG NAG . TA 5 D12 B 1 804 901 D12 D12 . UA 6 OCT B 1 805 902 OCT OCT . VA 6 OCT B 1 806 903 OCT OCT . WA 6 OCT B 1 807 904 OCT OCT . XA 7 C14 B 1 808 906 C14 C14 . YA 7 C14 B 1 809 907 C14 C14 . ZA 7 C14 B 1 810 908 C14 C14 . AB 7 C14 B 1 811 909 C14 C14 . BB 7 C14 B 1 812 910 C14 C14 . CB 6 OCT B 1 813 911 OCT OCT . DB 7 C14 B 1 814 912 C14 C14 . EB 6 OCT B 1 815 913 OCT OCT . FB 8 CLR B 1 816 914 CLR CLR . GB 6 OCT B 1 817 915 OCT OCT . HB 7 C14 B 1 818 916 C14 C14 . IB 7 C14 B 1 819 917 C14 C14 . JB 6 OCT B 1 820 918 OCT OCT . KB 9 D10 B 1 821 919 D10 D10 . LB 5 D12 B 1 822 920 D12 D12 . MB 6 OCT B 1 823 921 OCT OCT . NB 6 OCT B 1 824 922 OCT OCT . OB 6 OCT B 1 825 927 OCT OCT . PB 6 OCT B 1 826 928 OCT OCT . QB 7 C14 B 1 827 929 C14 C14 . RB 7 C14 B 1 828 932 C14 C14 . SB 7 C14 B 1 829 933 C14 C14 . TB 7 C14 B 1 830 934 C14 C14 . UB 6 OCT B 1 831 936 OCT OCT . VB 6 OCT B 1 832 937 OCT OCT . WB 10 R16 B 1 833 938 R16 R16 . XB 6 OCT B 1 834 939 OCT OCT . YB 6 OCT B 1 835 941 OCT OCT . ZB 6 OCT B 1 836 942 OCT OCT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C03 C14 . . . M 7 174.615 188.285 167.186 1 47.74 ? C03 C14 807 A 1 HETATM 2 C C04 C14 . . . M 7 175.376 189.436 166.543 1 49.51 ? C04 C14 807 A 1 HETATM 3 C C05 C14 . . . M 7 176.139 189.02 165.294 1 46.49 ? C05 C14 807 A 1 HETATM 4 C C06 C14 . . . M 7 177.172 190.047 164.847 1 52.37 ? C06 C14 807 A 1 HETATM 5 C C07 C14 . . . M 7 177.889 189.644 163.567 1 51.42 ? C07 C14 807 A 1 HETATM 6 C C08 C14 . . . M 7 178.282 190.827 162.693 1 46.59 ? C08 C14 807 A 1 HETATM 7 C C09 C14 . . . M 7 178.451 190.439 161.232 1 44.75 ? C09 C14 807 A 1 HETATM 8 C C10 C14 . . . M 7 179.406 191.347 160.474 1 43.74 ? C10 C14 807 A 1 HETATM 9 C C11 C14 . . . M 7 178.744 192.556 159.831 1 43.4 ? C11 C14 807 A 1 HETATM 10 C C12 C14 . . . M 7 179.588 193.137 158.706 1 44.71 ? C12 C14 807 A 1 HETATM 11 C C13 C14 . . . M 7 178.935 194.304 157.979 1 47.14 ? C13 C14 807 A 1 HETATM 12 C C14 C14 . . . M 7 179.62 194.626 156.659 1 45.78 ? C14 C14 807 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 390 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #